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1.  Identifying common components across biological network graphs using a bipartite data model 
BMC Proceedings  2014;8(Suppl 6):S4.
The GeneWeaver bipartite data model provides an efficient means to evaluate shared molecular components from sets derived across diverse species, disease states and biological processes. In order to adapt this model for examining related molecular components and biological networks, such as pathway or gene network data, we have developed a means to leverage the bipartite data structure to extract and analyze shared edges. Using the Pathway Commons database we demonstrate the ability to rapidly identify shared connected components among a diverse set of pathways. In addition, we illustrate how results from maximal bipartite discovery can be decomposed into hierarchical relationships, allowing shared pathway components to be mapped through various parent-child relationships to help visualization and discovery of emergent kernel driven relationships. Interrogating common relationships among biological networks and conventional GeneWeaver gene lists will increase functional specificity and reliability of the shared biological components. This approach enables self-organization of biological processes through shared biological networks.
doi:10.1186/1753-6561-8-S6-S4
PMCID: PMC4202189  PMID: 25374613
2.  Muscle Invasive Bladder Cancer: From Diagnosis to Survivorship 
Advances in Urology  2012;2012:142135.
Bladder cancer is the fifth most commonly diagnosed cancer and the most expensive adult cancer in average healthcare costs incurred per patient in the USA. However, little is known about factors influencing patients' treatment decisions, quality of life, and responses to treatment impairments. The main focus of this paper is to better understand the impact of muscle invasive bladder cancer on patient quality of life and its added implications for primary caregivers and healthcare providers. In this paper, we discuss treatment options, side effects, and challenges that patients and family caregivers face in different phases along the disease trajectory and further identify crucial areas of needed research.
doi:10.1155/2012/142135
PMCID: PMC3424737  PMID: 22924038
3.  A Patient of Lupus Presenting with Myocarditis and Overlapping Autoimmune Hepatitis 
Case Reports in Rheumatology  2011;2011:402483.
Systemic lupus erythematosus has myriad presentations. Symptomatic myocarditis and/or symptomatic autoimmune hepatitis associated with lupus are rare at presentation. Here we report a young Asian girl, who presented to us with features of symptomatic myocarditis and overlapping autoimmune hepatitis. She was eventually diagnosed to be harboring systemic lupus erythematosus, in whom rigorous management led to gratuitous recovery.
doi:10.1155/2011/402483
PMCID: PMC3420763  PMID: 22937445
4.  An Unusual Case of Myonecrosis 
Case Reports in Endocrinology  2011;2011:624020.
Diabetic Myonecrosis is a rare complication of long-standing Diabetes Mellitus Type 1 and 2. The most likely affected areas are of proximal lower limbs, mostly the quadriceps muscle. The presenting features are myriad and a diagnostic conundrum for the physician. There has been previously mentioned, through few case reports, the classical presentation of diabetes-related muscle infarction. Here we present a patient of diabetic myonecrosis, in whom the initial presentation of diabetes mellitus was that of bilateral symmetric proximal upper limb predominant muscle infarction, which has never been reported before.
doi:10.1155/2011/624020
PMCID: PMC3420726  PMID: 22937288
5.  Ophthalmology 
PMCID: PMC1215067

Results 1-5 (5)