Osteoporotic fracture is a major cause of morbidity and mortality worldwide. Low
bone mineral density (BMD) is a major predisposing factor to fracture and is
known to be highly heritable. Site-, gender-, and age-specific genetic effects
on BMD are thought to be significant, but have largely not been considered in
the design of genome-wide association studies (GWAS) of BMD to date. We report
here a GWAS using a novel study design focusing on women of a specific age
(postmenopausal women, age 55–85 years), with either extreme high or low
hip BMD (age- and gender-adjusted BMD z-scores of +1.5 to +4.0,
n = 1055, or −4.0 to −1.5,
n = 900), with replication in cohorts of women drawn from
the general population (n = 20,898). The study replicates
21 of 26 known BMD–associated genes. Additionally, we report suggestive
association of a further six new genetic associations in or around the genes
CLCN7, GALNT3, IBSP, LTBP3, RSPO3, and
SOX4, with replication in two independent datasets. A novel
mouse model with a loss-of-function mutation in GALNT3 is also
reported, which has high bone mass, supporting the involvement of this gene in
BMD determination. In addition to identifying further genes associated with BMD,
this study confirms the efficiency of extreme-truncate selection designs for
quantitative trait association studies.
Author Summary
Osteoporotic fracture is a major cause of early mortality and morbidity in the
community. To identify genes associated with osteoporosis, we have performed a
genome-wide association study. In order to improve study power and to address
the demographic group of highest risk from osteoporotic fracture, we have used a
unique study design, studying 1,955 postmenopausal women with either extreme
high or low hip bone mineral density. We then confirmed our findings in 20,898
women from the general population. Our study replicated 21 of 26 known
osteoporosis genes, and it identified a further six novel loci (in or nearby
CLCN7, GALNT3, IBSP, LTBP3, RSPO3, and
SOX4). For one of these loci, GALTN3, we
demonstrate in a mouse model that a loss-of-function genetic mutation in
GALNT3 causes high bone mass. These findings report novel
mechanisms by which osteoporosis can arise, and they significantly add to our
understanding of the aetiology of the disease.