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1.  Statistical wiring of thalamic receptive fields optimizes spatial sampling of the retinal image 
Neuron  2014;81(4):943-956.
Summary
It is widely assumed that mosaics of retinal ganglion cells establish the optimal representation of visual space. However, relay cells in the visual thalamus often receive convergent input from several retinal afferents and, in cat, outnumber ganglion cells. To explore how the thalamus transforms the retinal image, we built a model of the retinothalamic circuit using experimental data and simple wiring rules. The model shows how the thalamus might form a resampled map of visual space with the potential to facilitate detection of stimulus position in the presence of sensor noise. Bayesian decoding conducted with the model provides support for this scenario. Despite its benefits, however, resampling introduces image blur, thus impairing edge perception. Whole-cell recordings obtained in vivo suggest that this problem is mitigated by arrangements of excitation and inhibition within the receptive field that effectively boost contrast borders, much like strategies used in digital image processing.
doi:10.1016/j.neuron.2013.12.014
PMCID: PMC4114508  PMID: 24559681
2.  Structural Synaptic Plasticity Has High Memory Capacity and Can Explain Graded Amnesia, Catastrophic Forgetting, and the Spacing Effect 
PLoS ONE  2014;9(5):e96485.
Although already William James and, more explicitly, Donald Hebb's theory of cell assemblies have suggested that activity-dependent rewiring of neuronal networks is the substrate of learning and memory, over the last six decades most theoretical work on memory has focused on plasticity of existing synapses in prewired networks. Research in the last decade has emphasized that structural modification of synaptic connectivity is common in the adult brain and tightly correlated with learning and memory. Here we present a parsimonious computational model for learning by structural plasticity. The basic modeling units are “potential synapses” defined as locations in the network where synapses can potentially grow to connect two neurons. This model generalizes well-known previous models for associative learning based on weight plasticity. Therefore, existing theory can be applied to analyze how many memories and how much information structural plasticity can store in a synapse. Surprisingly, we find that structural plasticity largely outperforms weight plasticity and can achieve a much higher storage capacity per synapse. The effect of structural plasticity on the structure of sparsely connected networks is quite intuitive: Structural plasticity increases the “effectual network connectivity”, that is, the network wiring that specifically supports storage and recall of the memories. Further, this model of structural plasticity produces gradients of effectual connectivity in the course of learning, thereby explaining various cognitive phenomena including graded amnesia, catastrophic forgetting, and the spacing effect.
doi:10.1371/journal.pone.0096485
PMCID: PMC4032253  PMID: 24858841
3.  Inhibitory circuits for visual processing in thalamus 
Current opinion in neurobiology  2011;21(5):726-733.
Synapses made by local interneurons dominate the intrinsic circuitry of the mammalian visual thalamus and influence all signals traveling from the eye to cortex. Here we draw on physiological and computational analyses of receptive fields in the cat's lateral geniculate nucleus to describe how inhibition helps to enhance selectivity for stimulus features in space and time and to improve the efficiency of the neural code. Further, we explore specialized synaptic attributes of relay cells and interneurons and discuss how these might be adapted to preserve the temporal precision of retinal spike trains and thereby maximize the rate of information transmitted downstream.
doi:10.1016/j.conb.2011.06.004
PMCID: PMC3767471  PMID: 21752634
4.  Thalamic interneurons and relay cells use complementary synaptic mechanisms for visual processing 
Nature neuroscience  2010;14(2):224-231.
Synapses made by local interneurons dominate the thalamic circuits that process signals traveling from the eye downstream. The anatomical and physiological differences between interneurons and the (relay) cells that project to cortex are vast. To explore how these differences might influence visual processing, we made intracellular recordings from both classes of cells in vivo. Macroscopically, all receptive fields were similar, made of two concentrically arranged subregions in which dark and bright stimuli elicited responses of the reverse sign. Microscopically, however, the responses of the two types of cells had opposite profiles. Excitatory stimuli drove trains of single EPSPs in relay cells but graded depolarizations in interneurons. By contrast, suppressive stimuli evoked smooth hyperpolarizations in relay cells but unitary IPSPs in interneurons. Computational analyses suggested that these complementary patterns of response help preserve information encoded within the fine timing of retinal spikes and increase the amount of information transmitted to cortex.
doi:10.1038/nn.2707
PMCID: PMC3767474  PMID: 21170053
5.  Learning and exploration in action-perception loops 
Discovering the structure underlying observed data is a recurring problem in machine learning with important applications in neuroscience. It is also a primary function of the brain. When data can be actively collected in the context of a closed action-perception loop, behavior becomes a critical determinant of learning efficiency. Psychologists studying exploration and curiosity in humans and animals have long argued that learning itself is a primary motivator of behavior. However, the theoretical basis of learning-driven behavior is not well understood. Previous computational studies of behavior have largely focused on the control problem of maximizing acquisition of rewards and have treated learning the structure of data as a secondary objective. Here, we study exploration in the absence of external reward feedback. Instead, we take the quality of an agent's learned internal model to be the primary objective. In a simple probabilistic framework, we derive a Bayesian estimate for the amount of information about the environment an agent can expect to receive by taking an action, a measure we term the predicted information gain (PIG). We develop exploration strategies that approximately maximize PIG. One strategy based on value-iteration consistently learns faster than previously developed reward-free exploration strategies across a diverse range of environments. Psychologists believe the evolutionary advantage of learning-driven exploration lies in the generalized utility of an accurate internal model. Consistent with this hypothesis, we demonstrate that agents which learn more efficiently during exploration are later better able to accomplish a range of goal-directed tasks. We will conclude by discussing how our work elucidates the explorative behaviors of animals and humans, its relationship to other computational models of behavior, and its potential application to experimental design, such as in closed-loop neurophysiology studies.
doi:10.3389/fncir.2013.00037
PMCID: PMC3619626  PMID: 23579347
knowledge acquisition; information theory; control theory; machine learning; behavioral psychology; computational neuroscience
6.  Neurons in the thalamic reticular nucleus are selective for diverse and complex visual features 
All visual signals the cortex receives are influenced by the perigeniculate sector (PGN) of the thalamic reticular nucleus, which receives input from relay cells in the lateral geniculate and provides feedback inhibition in return. Relay cells have been studied in quantitative depth; they behave in a roughly linear fashion and have receptive fields with a stereotyped center-surround structure. We know far less about reticular neurons. Qualitative studies indicate they simply pool ascending input to generate non-selective gain control. Yet the perigeniculate is complicated; local cells are densely interconnected and fire lengthy bursts. Thus, we employed quantitative methods to explore the perigeniculate using relay cells as controls. By adapting methods of spike-triggered averaging and covariance analysis for bursts, we identified both first and second order features that build reticular receptive fields. The shapes of these spatiotemporal subunits varied widely; no stereotyped pattern emerged. Companion experiments showed that the shape of the first but not second order features could be explained by the overlap of On and Off inputs to a given cell. Moreover, we assessed the predictive power of the receptive field and how much information each component subunit conveyed. Linear-non-linear (LN) models including multiple subunits performed better than those made with just one; further each subunit encoded different visual information. Model performance for reticular cells was always lesser than for relay cells, however, indicating that reticular cells process inputs non-linearly. All told, our results suggest that the perigeniculate encodes diverse visual features to selectively modulate activity transmitted downstream.
doi:10.3389/fnint.2012.00118
PMCID: PMC3529363  PMID: 23269915
LGN; TRN; inhibition; receptive field; thalamus
7.  Recoding of Sensory Information across the Retinothalamic Synapse 
The Journal of Neuroscience  2010;30(41):13567-13577.
The neural code that represents the world is transformed at each stage of a sensory pathway. These transformations enable downstream neurons to recode information they receive from earlier stages. Using the retinothalamic synapse as a model system, we developed a theoretical framework to identify stimulus features that are inherited, gained, or lost across stages. Specifically, we observed that thalamic spikes encode novel, emergent, temporal features not conveyed by single retinal spikes. Furthermore, we found that thalamic spikes are not only more informative than retinal ones, as expected, but also more independent. Next, we asked how thalamic spikes gain sensitivity to the emergent features. Explicitly, we found that the emergent features are encoded by retinal spike pairs and then recoded into independent thalamic spikes. Finally, we built a model of synaptic transmission that reproduced our observations. Thus, our results established a link between synaptic mechanisms and the recoding of sensory information.
doi:10.1523/JNEUROSCI.0910-10.2010
PMCID: PMC3842493  PMID: 20943898
8.  Exploring the Function of Neural Oscillations in Early Sensory Systems 
Neuronal oscillations appear throughout the nervous system, in structures as diverse as the cerebral cortex, hippocampus, subcortical nuclei and sense organs. Whether neural rhythms contribute to normal function, are merely epiphenomena, or even interfere with physiological processing are topics of vigorous debate. Sensory pathways are ideal for investigation of oscillatory activity because their inputs can be defined. Thus, we will focus on sensory systems as we ask how neural oscillations arise and how they might encode information about the stimulus. We will highlight recent work in the early visual pathway that shows how oscillations can multiplex different types of signals to increase the amount of information that spike trains encode and transmit. Last, we will describe oscillation-based models of visual processing and explore how they might guide further research.
doi:10.3389/neuro.01.010.2010
PMCID: PMC2891629  PMID: 20582272
LGN; retina; visual coding; oscillations; multiplexing
9.  Retinal Oscillations Carry Visual Information to Cortex 
Thalamic relay cells fire action potentials that transmit information from retina to cortex. The amount of information that spike trains encode is usually estimated from the precision of spike timing with respect to the stimulus. Sensory input, however, is only one factor that influences neural activity. For example, intrinsic dynamics, such as oscillations of networks of neurons, also modulate firing pattern. Here, we asked if retinal oscillations might help to convey information to neurons downstream. Specifically, we made whole-cell recordings from relay cells to reveal retinal inputs (EPSPs) and thalamic outputs (spikes) and then analyzed these events with information theory. Our results show that thalamic spike trains operate as two multiplexed channels. One channel, which occupies a low frequency band (<30 Hz), is encoded by average firing rate with respect to the stimulus and carries information about local changes in the visual field over time. The other operates in the gamma frequency band (40–80 Hz) and is encoded by spike timing relative to retinal oscillations. At times, the second channel conveyed even more information than the first. Because retinal oscillations involve extensive networks of ganglion cells, it is likely that the second channel transmits information about global features of the visual scene.
doi:10.3389/neuro.06.004.2009
PMCID: PMC2674373  PMID: 19404487
LGN; retina; visual coding; natural stimuli; oscillations
10.  Feedforward Excitation and Inhibition Evoke Dual Modes of Firing in the Cat’s Visual Thalamus during Naturalistic Viewing 
Neuron  2007;55(3):465-478.
SUMMARY
Thalamic relay cells transmit information from retina to cortex by firing either rapid bursts or tonic trains of spikes. Bursts occur when the membrane voltage is low, as during sleep, because they depend on channels that cannot respond to excitatory input unless they are primed by strong hyperpolarization. Cells fire tonically when depolarized, as during waking. Thus, mode of firing is usually associated with behavioral state. Growing evidence, however, suggests that sensory processing involves both burst and tonic spikes. To ask if visually evoked synaptic responses induce each type of firing, we recorded intracellular responses to natural movies from relay cells and developed methods to map the receptive fields of the excitation and inhibition that the images evoked. In addition to tonic spikes, the movies routinely elicited lasting inhibition from the center of the receptive field that permitted bursts to fire. Therefore, naturally evoked patterns of synaptic input engage dual modes of firing.
doi:10.1016/j.neuron.2007.06.039
PMCID: PMC2587266  PMID: 17678858
11.  Receptive field structure varies with layer in the primary visual cortex 
Nature neuroscience  2005;8(3):372-379.
Here we ask whether visual response pattern varies with position in the cortical microcircuit by comparing the structure of receptive fields recorded from the different layers of the cat's primary visual cortex. We used whole-cell recording in vivo to show the spatial distribution of visually evoked excitatory and inhibitory inputs and to stain individual neurons. We quantified the distribution of ‘On’ and ‘Off’ responses and the presence of spatially opponent excitation and inhibition within the receptive field. The thalamorecipient layers (4 and upper 6) were dominated by simple cells, as defined by two criteria: they had separated On and Off subregions, and they had push-pull responses (in a given subregion, stimuli of the opposite contrast evoked responses of the opposite sign). Other types of response profile correlated with laminar location as well. Thus, connections unique to each visual cortical layer are likely to serve distinct functions.
doi:10.1038/nn1404
PMCID: PMC1987328  PMID: 15711543

Results 1-11 (11)