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1.  A Quantitative Theory of Human Color Choices 
PLoS ONE  2013;8(2):e55986.
The system for colorimetry adopted by the Commission Internationale de l’Eclairage (CIE) in 1931, along with its subsequent improvements, represents a family of light mixture models that has served well for many decades for stimulus specification and reproduction when highly controlled color standards are important. Still, with regard to color appearance many perceptual and cognitive factors are known to contribute to color similarity, and, in general, to all cognitive judgments of color. Using experimentally obtained odd-one-out triad similarity judgments from 52 observers, we demonstrate that CIE-based models can explain a good portion (but not all) of the color similarity data. Color difference quantified by CIELAB ΔE explained behavior at levels of 81% (across all colors), 79% (across red colors), and 66% (across blue colors). We show that the unexplained variation cannot be ascribed to inter- or intra-individual variations among the observers, and points to the presence of additional factors shared by the majority of responders. Based on this, we create a quantitative model of a lexicographic semiorder type, which shows how different perceptual and cognitive influences can trade-off when making color similarity judgments. We show that by incorporating additional influences related to categorical and lightness and saturation factors, the model explains more of the triad similarity behavior, namely, 91% (all colors), 90% (reds), and 87% (blues). We conclude that distance in a CIE model is but the first of several layers in a hierarchy of higher-order cognitive influences that shape color triad choices. We further discuss additional mitigating influences outside the scope of CIE modeling, which can be incorporated in this framework, including well-known influences from language, stimulus set effects, and color preference bias. We also discuss universal and cultural aspects of the model as well as non-uniformity of the color space with respect to different cultural biases.
doi:10.1371/journal.pone.0055986
PMCID: PMC3569434  PMID: 23409103
2.  Color Selectivity of Neurons in the Posterior Inferior Temporal Cortex of the Macaque Monkey 
Cerebral Cortex (New York, NY)  2009;20(7):1630-1646.
We recorded the activities of neurons in the lateral surface of the posterior inferior temporal cortex (PIT) of 3 hemispheres of 3 monkeys performing a visual fixation task. We characterized the color and shape selectivities of each neuron, mapped its receptive field (RF), and studied the distributions of these response properties. Using a set of color stimuli that were systematically distributed in Commission Internationale de l'Eclairage-xy chromaticity diagram, we found numerous color-selective neurons distributed throughout the area examined. Neurons in the ventral region tended to have sharper color tuning than those in the dorsal region. We also found a crude retinotopic organization in the ventral region. Within the ventral region of PIT, neurons in the dorsal part had RFs that overlapped the foveal center; the eccentricity of RFs increased in the more ventral part, and neurons in the anterior and posterior parts had RFs that represented the lower and upper visual fields, respectively. In all 3 hemispheres, the region where sharply tuned color-selective neurons were concentrated was confined within this retinotopic map. These findings suggest that PIT is a heterogeneous area and that there is a circumscribed region within it that has crude retinotopic organization and is involved in the processing of color.
doi:10.1093/cercor/bhp227
PMCID: PMC2882824  PMID: 19880593
color; inferior temporal cortex; primate; retinotopy; TEO; visual cortex
3.  Facial Skin Coloration Affects Perceived Health of Human Faces 
Numerous researchers have examined the effects of skin condition, including texture and color, on the perception of health, age, and attractiveness in human faces. They have focused on facial color distribution, homogeneity of pigmentation, or skin quality. We here investigate the role of overall skin color in determining perceptions of health from faces by allowing participants to manipulate the skin portions of color-calibrated Caucasian face photographs along CIELab color axes. To enhance healthy appearance, participants increased skin redness (a*), providing additional support for previous findings that skin blood color enhances the healthy appearance of faces. Participants also increased skin yellowness (b*) and lightness (L*), suggesting a role for high carotenoid and low melanin coloration in the healthy appearance of faces. The color preferences described here resemble the red and yellow color cues to health displayed by many species of nonhuman animals.
doi:10.1007/s10764-009-9380-z
PMCID: PMC2780675  PMID: 19946602
beauty; diet; flushing; hemoglobin; UV protection
4.  Standardization of In vitro Macrophotography for Assessment of Cutaneous Responses 
Photochemistry and photobiology  2009;85(4):1032-1037.
The increased popularity of commercially available 3-dimensional human skin equivalents in recent years has allowed for assessment of melanogenesis modulated by compounds topically applied to the skin or directly incorporated from the medium. These skin equivalents provide a suitable model for elucidating the mechanisms of action of various factors that modulate skin pigmentation or other properties of the skin. As such, researchers need to objectively quantify cutaneous responses at the macroscopic level. A simple method to standardize macrophotography images is reported that can quantify cutaneous responses in human skin equivalents of Asian, Black or African American, and Caucasian or White racial/ethnic origin. Macrophotographs are analyzed using the Commission Internationale de l’Eclairage L*a*b* color space system in combination with a personal computer and image editing software. Pigmentation changes monitored over a 9 day period showed a high correlation with melanin content evaluated in Fontana-Masson stained sections. These results indicate the feasibility of using a macrophotography setup in a sterile tissue culture environment to objectively assess in vitro cutaneous responses in human skin equivalents. This serves as an adjunct tool to biochemical and morphological methods to effectively quantify changes in pigmentation over time.
doi:10.1111/j.1751-1097.2009.00549.x
PMCID: PMC2705686  PMID: 19320841
5.  Dissociation of Color and Figure-Ground Effects in the Watercolor Illusion 
Spatial vision  2006;19(2-4):323-340.
Two phenomena can be observed in the watercolor illusion: illusory color spreading and figure-ground organization. We performed experiments to determine whether the figure-ground effect is a consequence of the color illusion or due to an independent mechanism. Subjects were tested with displays consisting of six adjacent compartments, three that generated the illusion alternating with three that served for comparison. In a first set of experiments, the illusory color was measured by finding the matching physical color in the alternate compartments. Figureness (probability of ‘figure’ responses, 2AFC) of the watercolor compartments was then determined with and without the matching color in the alternate compartments. The color match reduced figureness, but did not abolish it. There was a range of colors in which the watercolor compartments dominated as figures over the alternate compartments although the latter appeared more saturated in color. In another experiment, the effect of tinting alternate compartments was measured in displays without watercolor illusion. Figureness increased with color contrast, but its value at the equivalent contrast fell short of the figureness value obtained for the watercolor pattern. Thus, in both experiments figureness produced by the watercolor pattern was stronger than expected from the color effect, suggesting independent mechanisms. Considering the neurophysiology, we propose that the color illusion follows from the principles of representation of surface color in the visual cortex, while the figure-ground effect results from two mechanisms of border ownership assignment, one that is sensitive to asymmetric shape of edge profile, the other to consistency of color borders.
PMCID: PMC1551905  PMID: 16862843
Watercolor illusion; figure-ground segregation; border ownership; surface color; neural coding of contour
6.  Color standardization and optimization in Whole Slide Imaging 
Diagnostic Pathology  2011;6(Suppl 1):S15.
Introduction
Standardization and validation of the color displayed by digital slides is an important aspect of digital pathology implementation. While the most common reason for color variation is the variance in the protocols and practices in the histology lab, the color displayed can also be affected by variation in capture parameters (for example, illumination and filters), image processing and display factors in the digital systems themselves.
Method
We have been developing techniques for color validation and optimization along two paths. The first was based on two standard slides that are scanned and displayed by the imaging system in question. In this approach, one slide is embedded with nine filters with colors selected especially for H&E stained slides (looking like tiny Macbeth color chart); the specific color of the nine filters were determined in our previous study and modified for whole slide imaging (WSI). The other slide is an H&E stained mouse embryo. Both of these slides were scanned and the displayed images were compared to a standard. The second approach was based on our previous multispectral imaging research.
Discussion
As a first step, the two slide method (above) was used to identify inaccurate display of color and its cause, and to understand the importance of accurate color in digital pathology. We have also improved the multispectral-based algorithm for more consistent results in stain standardization. In near future, the results of the two slide and multispectral techniques can be combined and will be widely available.
We have been conducting a series of researches and developing projects to improve image quality to establish Image Quality Standardization. This paper discusses one of most important aspects of image quality – color.
doi:10.1186/1746-1596-6-S1-S15
PMCID: PMC3073208  PMID: 21489185
7.  Beyond Correlation: Do Color Features Influence Attention in Rainforest? 
Recent research indicates a direct relationship between low-level color features and visual attention under natural conditions. However, the design of these studies allows only correlational observations and no inference about mechanisms. Here we go a step further to examine the nature of the influence of color features on overt attention in an environment in which trichromatic color vision is advantageous. We recorded eye-movements of color-normal and deuteranope human participants freely viewing original and modified rainforest images. Eliminating red–green color information dramatically alters fixation behavior in color-normal participants. Changes in feature correlations and variability over subjects and conditions provide evidence for a causal effect of red–green color-contrast. The effects of blue–yellow contrast are much smaller. However, globally rotating hue in color space in these images reveals a mechanism analyzing color-contrast invariant of a specific axis in color space. Surprisingly, in deuteranope participants we find significantly elevated red–green contrast at fixation points, comparable to color-normal participants. Temporal analysis indicates that this is due to compensatory mechanisms acting on a slower time scale. Taken together, our results suggest that under natural conditions red–green color information contributes to overt attention at a low-level (bottom-up). Nevertheless, the results of the image modifications and deuteranope participants indicate that evaluation of color information is done in a hue-invariant fashion.
doi:10.3389/fnhum.2011.00036
PMCID: PMC3079176  PMID: 21519395
attention; eye-movements; color
8.  Comparison of Color LCD and Medical-grade Monochrome LCD Displays in Diagnostic Radiology 
Journal of Digital Imaging  2007;20(2):114-121.
In diagnostic radiology, medical-grade monochrome displays are usually recommended because of their higher luminance. Standard color displays can be used as a less expensive alternative, but have a lower luminance. The aim of the present study was to compare image quality for these two types of displays. Images of a CDRAD contrast-detail phantom were read by four radiologists using a 2-megapixel (MP) color display (143 cd/m2 maximum luminance) as well as 2-MP (295 cd/m2) and 3-MP monochrome displays. Thirty lumbar spine radiographs were also read by four radiologists using the color and the 2-MP monochrome display in a visual grading analysis (VGA). Very small differences were found between the displays when reading the CDRAD images. The VGA scores were −0.28 for the color and −0.25 for the monochrome display (p = 0.24; NS). It thus seems possible to use color displays in diagnostic radiology provided that grayscale adjustment is used.
doi:10.1007/s10278-007-9028-5
PMCID: PMC3043910  PMID: 17340227
PACS; displays; digital imaging; luminance; image quality; monitor; medical imaging; liquid crystal display
9.  Behavioral research in pigeons with ARENA: An automated remote environmental navigation apparatus 
Behavioural processes  2009;81(1):105-113.
Three experiments established the effectiveness of an Automated Remote Environmental Navigation Apparatus (ARENA) developed in our lab to study behavioral processes in pigeons. The technology utilizes one or more wireless modules, each capable of presenting colored lights as visual stimuli to signal reward and of detecting subject peck responses. In Experiment 1, subjects were instrumentally shaped to peck at a single ARENA module following an unsuccessful autoshaping procedure. In Experiment 2, pigeons were trained with a simultaneous discrimination procedure during which two modules were illuminated different colors; pecks to one color (S+) were reinforced while pecks to the other color (S−) were not. Pigeons learned to preferentially peck the module displaying the S+. In Experiment 3, two modules were lit the same color concurrently from a set of six colors in a conditional discrimination task. For three of the colors pecks to the module in one location (e.g., upper quadrant) were reinforced while for the remaining colors pecks at the other module (e.g., lower quadrant) were reinforced. After learning this discrimination, the color-reinforced location assignments were reversed. Pigeons successfully acquired the reversal. ARENA is an automated system for open-field studies and a more ecologically valid alternative to the touchscreen.
doi:10.1016/j.beproc.2009.02.008
PMCID: PMC2680771  PMID: 19429204
pigeon; autoshaping; conditional discrimination; open field; touchscreen; simultaneous discrimination
10.  System of Color Wheels for Streptomycete Taxonomy 
Applied Microbiology  1963;11(4):335-338.
In the sundry systems of streptomycete taxonomy, color of the sporulating aerial mycelium is frequently employed as a systematic criterion. Color series, each containing species of similar spore colors, are generally erected; however, the range of colors encompassed within a series is often not clearly delineated by the usual word description. Therefore, a system is proposed in which the color content of each series is more accurately defined by means of color tabs. Seven spore-color series are recognized (i.e., red, gray, yellow, blue, green, violet, and white), each of which is represented by a color wheel that displays the range of colors included therein. By comparing spore colors with the color wheels, unclassified isolates can readily be assigned to appropriate color groups.
Images
PMCID: PMC1057998  PMID: 13994094
11.  Reaction time distributions constrain models of visual search 
Vision research  2009;50(14):1304-1311.
Many experiments have investigated visual search for simple stimuli like colored bars or alphanumeric characters. When eye movements are not a limiting factor, these tasks tend to produce roughly linear functions relating reaction time (RT) to the number of items in the display (set size). The slopes of the RT × set size functions for different searches fall on a continuum from highly efficient (slopes near zero) to inefficient (slopes > 25-30 msec/item). Many theories of search can produce the correct pattern of mean RTs. Producing the correct RT distributions is more difficult. In order to guide future modeling, we have collected a very large data set (about 112,000 trials) on three tasks: an efficient color feature search, an inefficient search for a 2 among 5s, and an intermediate color × orientation conjunction search. The RT distributions have interesting properties. For example, target absent distributions overlap target present more than would be expected if the decision to end search were based on a simple elapsed time threshold. Other qualitative properties of the RT distributions falsify some classes of model. For example, normalized RT distributions do not change shape as set size changes as a standard self-terminating model predicts that they should.
doi:10.1016/j.visres.2009.11.002
PMCID: PMC2891283  PMID: 19895828
12.  The costs of switching attentional sets 
People prioritize those aspects of the visual environment that match their attentional set. In the present study, we investigated whether switching from one attentional set to another is associated with a cost. We asked observers to sequentially saccade toward two color-defined targets, one on the left side of the display, the other on the right, each among a set of heterogeneously colored distractors. The targets were of the same color (no attentional set switch required) or of different colors (switch of attentional sets necessary), with each color consistently tied to a side, to allow observers to maximally prepare for the switch. We found that saccades were less accurate and slower in the switch condition than in the no-switch condition. Furthermore, whenever one of the distractors had the color associated with the other attentional set, a substantial proportion of saccades did not end on the target, but on this distractor. A time course analysis revealed that this distractor preference turned into a target preference after about 250–300 ms, suggesting that this is the time required to switch attentional sets.
doi:10.3758/s13414-011-0198-3
PMCID: PMC3222812  PMID: 21879418
Attention; Eye movements: cognitive
13.  The Time Course of Color- and Luminance-Based Salience Effects 
Salient objects in the visual field attract our attention. Recent work in the orientation domain has shown that the effects of the relative salience of two singleton elements on covert visual attention disappear over time. The present study aims to investigate how salience derived from color and luminance differences affects covert selection. In two experiments, observers indicated the location of a probe which was presented at different stimulus-onset-asynchronies after the presentation of a singleton display containing a homogenous array of oriented lines and two distinct color singletons (Experiment 1) or luminance singletons (Experiment 2). The results show that relative singleton salience from luminance and color differences, just as from orientation differences, affects covert visual attention in a brief time span after stimulus onset. The mere presence of an object, however, can affect covert attention for a longer time span regardless of salience.
doi:10.3389/fpsyg.2010.00189
PMCID: PMC3153798  PMID: 21833249
attention; vision; time course; salience
14.  Behavior, Color Change and Time for Sexual Inversion in the Protogynous Grouper (Epinephelus adscensionis) 
PLoS ONE  2011;6(5):e19576.
Hermaphroditism, associated with territoriality and dominance behavior, is common in the marine environment. While male sex-specific coloration patterns have been documented in groupers, particularly during the spawning season, few data regarding social structure and the context for these color displays are available. In the present study, we define the social structure and male typical behavior of rock hind (Epinephelus adscensionis) in the wild. In addition, we detail the captive conditions and time period necessary to induce the onset of the sex-specific coloration and sexual change. At six oil production platform locations in the Gulf of Mexico, rock hind social group size and typical male rock hind social behavior were documented. We observed a rapid temporary color display in rock hind that could be turned on and off within three seconds and was used for confronting territory intruders and displays of aggression towards females. The male-specific “tuxedo” pattern consists of a bright yellow tail, a body with alternating dark brown and white patches and a dark bar extending from the upper mandible to the operculum. Identification and size ranges of male, female and intersex fish collected from oil platforms were determined in conjunction with gonadal histology. Rock hind social order is haremic with one dominant male defending a territory and a linear dominance hierarchy among individuals. In five captive experiments, the largest remaining female rock hind displayed the male specific color pattern within 32d after dominant male removal from the social group. To our knowledge, this is the first evidence in a grouper species of color patterning used to display territoriality and dominance outside of spawning aggregations. The behavioral paradigm described here is a key advance that will enable mechanistic studies of this complex sex change process.
doi:10.1371/journal.pone.0019576
PMCID: PMC3102057  PMID: 21647429
15.  Comparison of Human Observer Performance of Contrast-Detail Detection Across Multiple Liquid Crystal Displays 
Journal of Digital Imaging  2005;18(1):66-77.
Appropriate selection of a display subsystem requires balancing the optimization of its physical parameters with clinical setting and cost. Recent advances in Liquid Crystal Display (LCD) technology warrant a rigorous evaluation of both the specialized and the mass market displays for clinical radiology. This article outlines step two in the evaluation of a novel 9.2 million pixel IBM AMLCD panel. Prior to these experiments, the panel was calibrated according to the DICOM Part 14 standard, using both a gray-scale and a pseudo-gray scale lookup table. The specific aim of this study is to compare human, contrast-detail perception on different computer display subsystems. The subsystems that we looked at included 3- and 5-million pixel “medical-grade” monochrome LCDs and a 9.2-million pixel color LCD. We found that the observer response was similar for these three display configurations.
doi:10.1007/s10278-004-1035-1
PMCID: PMC3047211  PMID: 15645331
LCD; phantom; contrast-detail; observer; perception
16.  Clothing Matching for Visually Impaired Persons 
Technology and disability  2011;23(2):75-85.
Matching clothes is a challenging task for many blind people. In this paper, we present a proof of concept system to solve this problem. The system consists of 1) a camera connected to a computer to perform pattern and color matching process; 2) speech commands for system control and configuration; and 3) audio feedback to provide matching results for both color and patterns of clothes. This system can handle clothes in deficient color without any pattern, as well as clothing with multiple colors and complex patterns to aid both blind and color deficient people. Furthermore, our method is robust to variations of illumination, clothing rotation and wrinkling. To evaluate the proposed prototype, we collect two challenging databases including clothes without any pattern, or with multiple colors and different patterns under different conditions of lighting and rotation. Results reported here demonstrate the robustness and effectiveness of the proposed clothing matching system.
doi:10.3233/TAD-2011-0313
PMCID: PMC3328861  PMID: 22523465
Blind; Color Blind; Computer Vision; Clothing Matching; Color Matching; Pattern Analysis; Visually Impaired
17.  Assessment of a Novel, High-Resolution, Color, AMLCD for Diagnostic Medical Image Display: Luminance Performance and DICOM Calibration 
Journal of Digital Imaging  2003;16(3):270-279.
This article documents the results of the first in a series of experiments designed to evaluate the suitability of a novel, high resolution, color, digital, liquid crystal display (LCD) panel for diagnostic quality, gray scale image display. The goal of this experiment was to measure the performance of the display, especially with respect to luminance. The panel evaluated was the IBM T221 22.2” backlit active matrix liquid crystal display (AMLCD) with native resolution of 3840 × 2400 pixels. Taking advantage of the color capabilities of the workstation, we were able to create a 256-entry grayscale calibration look-up table derived from a palette of 1786 nearly gray luminance values. We also constructed a 256-entry grayscale calibration look-up table derived from a palette of 256 true gray values for which the red, green, and blue values were equal. These calibrations will now be used in our evaluation of human contrast-detail perception on this LCD panel.
doi:10.1007/s10278-003-1718-z
PMCID: PMC3045256  PMID: 14669065
PACS; image display; AMLCD evaluation; DICOM Part 14 calibration
18.  The Manchester Color Wheel: development of a novel way of identifying color choice and its validation in healthy, anxious and depressed individuals 
Background
For the purposes of our research programme we needed a simple, reliable and validated method for allowing choice of a color in response to a series of questions. On reviewing the literature no such instrument was available and this study aimed to rectify this situation. This was achieved by developing a simple method of presenting a series of colors to people validating it in healthy volunteers and in individuals where color choice might be distorted, namely anxiety and depression.
Methods
A series of different presentations of four shades of eight colors and grey, as well as black and white were evaluated. 'Mood', 'favourite' and 'drawn to' colors were assessed in 105 healthy, 108 anxious and 110 depressed participants. The positive, neutral or negative attribution of these colors was recorded in a further 204 healthy volunteers.
Results
The circular presentation of colors was most favoured (Color Wheel). Yellow was the most 'drawn to' color and blue the commonest 'favourite' color in all subjects. Yellow was most often associated with a normal mood and grey with an anxious or depressed mood. Different shades of the same color had completely different positive or negative connotations. Reproducibility was exceptionally high when color choice was recorded in positive, neutral or negative terms.
Conclusions
The Color Wheel could be used to assess health status, mood or even treatment outcome in a variety of clinical situations. It may also have utility in circumstances where verbal communication may not be optimal, such as with children.
doi:10.1186/1471-2288-10-12
PMCID: PMC2829580  PMID: 20144203
19.  Color Constancy of Red-Green Dichromats and Anomalous Trichromats 
These data show for the first time that color-deficient subjects can make objective judgments about surface color under different lights as reliably as normal trichromats; that this performance does not depend on the spatial cues provided by natural objects and scenes; and that individual differences in performance are not correlated with clinical anomaloscope matching. A possible explanation of these subjects' performance is outlined.
Purpose.
Color-vision deficiency is associated with abnormalities in color matching and color discrimination, but its impact on the ability of people to judge the constancy of surface colors under different lights (color constancy) is less clear. This work had two aims: first, to quantify the degree of color constancy in subjects with congenital red-green color deficiency; second, to test whether the degree of color constancy in anomalous trichromats can be predicted from their Rayleigh anomaloscope matches.
Methods.
Color constancy of red-green color-deficient subjects was tested in a task requiring the discrimination of illuminant changes from surface-reflectance changes. Mondrian-like colored patterns, generated on the screen of a computer monitor, were used as stimuli to avoid the spatial cues provided by natural objects and scenes. Spectral reflectances were taken from the Munsell Book of Color and from natural scenes. Illuminants were taken from the daylight locus.
Results.
Protanopes and deuteranopes performed more poorly than normal trichromats with Munsell spectral reflectances but were less impaired with natural spectral reflectances. Protanomalous and deuteranomalous trichromats performed as well as, or almost as well as, normal trichromats, independent of the type of reflectance. Individual differences were not correlated with Rayleigh anomaloscope matches.
Conclusions.
Despite the evidence of clinical color-vision tests, red-green color-deficient persons are less disadvantaged than might be expected in their judgments of surface colors under different lights.
doi:10.1167/iovs.09-4576
PMCID: PMC2868405  PMID: 19892868
20.  Real-time bulk-motion-correction free Doppler variance optical coherence tomography for choroidal capillary vasculature imaging 
Optics express  2011;19(4):3657-3666.
In this paper, we analyze the retinal and choroidal blood vasculature in the posterior segment of the human eye with optimized color Doppler and Doppler variance optical coherence tomography. Depth-resolved structure, color Doppler and Doppler variance images are compared. Blood vessels down to the capillary level were detected and visualized with the optimized optical coherence color Doppler and Doppler variance method. For in-vivo imaging of human eyes, bulk-motion induced bulk phase must be identified and removed before using the color Doppler method. It was found that the Doppler variance method is not sensitive to bulk-motion and the method can be used without correcting the bulk-motion when the sample-movement-induced velocity changes gradually. Real-time processing and displaying of the structure and blood vessel images are very interesting and is demonstrated using a dual quad-core Central Processing Unit (CPU) workstation. High resolution images of choroidal capillary of the vasculature network with phased-resolved color Doppler and Doppler variance are shown.
PMCID: PMC3110778  PMID: 21369191
21.  Real-time bulk-motion-correction free Doppler variance optical coherence tomography for choroidal capillary vasculature imaging 
Optics Express  2011;19(4):3657-3666.
In this paper, we analyze the retinal and choroidal blood vasculature in the posterior segment of the human eye with optimized color Doppler and Doppler variance optical coherence tomography. Depth-resolved structure, color Doppler and Doppler variance images are compared. Blood vessels down to the capillary level were detected and visualized with the optimized optical coherence color Doppler and Doppler variance method. For in-vivo imaging of human eyes, bulk-motion induced bulk phase must be identified and removed before using the color Doppler method. It was found that the Doppler variance method is not sensitive to bulk-motion and the method can be used without correcting the bulk-motion when the sample-movement-induced velocity changes gradually. Real-time processing and displaying of the structure and blood vessel images are very interesting and is demonstrated using a dual quad-core Central Processing Unit (CPU) workstation. High resolution images of choroidal capillary of the vasculature network with phased-resolved color Doppler and Doppler variance are shown.
doi:10.1364/OE.19.003657
PMCID: PMC3110778  PMID: 21369191
(170.4500) Optical coherence tomography; (170.3890) Medical optics instrumentation; (170.3340) Laser Doppler velocimetry
22.  Adaptive Color Polymorphism and Unusually High Local Genetic Diversity in the Side-Blotched Lizard, Uta stansburiana 
PLoS ONE  2012;7(10):e47694.
Recently, studies of adaptive color variation have become popular as models for examining the genetics of natural selection. We examined color pattern polymorphism and genetic variation in a population of side-blotched lizards (Uta stansburiana) that is found in habitats with both dark (lava) and light colored (granite) substrates. We conducted a limited experiment for adult phenotypic plasticity in laboratory conditions. We recorded both substrate and lizard color patterns in the field to determine whether lizards tended to match their substrate. Finally we examined genetic variation in a gene (melanocortin 1 receptor) that has been shown to affect lizard color in other species and in a presumably neutral gene (mitochondrial cytochrome b). Populations were sampled in the immediate area of the lava flows as well as from a more distant site to examine the role of population structure. Our captive Uta did not change color to match their background. We show that side-blotched lizards tend to match the substrate on which it was caught in the field and that variation in the melanocortin 1 receptor gene does not correlate well with color pattern in this population. Perhaps the most remarkable result is that this population of side-blotched lizards shows extremely high levels of variation at both genetic markers, in the sense of allele numbers, with relatively low levels of between-allele sequence variation. Genetic variation across this small region was as great or greater than that seen in samples of pelagic fish species collected worldwide. Statistical analysis of genetic variation suggests rapid population expansion may be responsible for the high levels of variation.
doi:10.1371/journal.pone.0047694
PMCID: PMC3485026  PMID: 23133520
23.  Feature binding of a continuously changing object 
Consider a feature of a stimulus (such as color, luminance or spatial frequency) that changes over time along a continuum. When a second stimulus is briefly pulsed with the same feature value as the first stimulus, the two stimuli are not perceived to match. Instead, the continuously changing stimulus is perceived to be farther ahead on the feature continuum than the pulsed stimulus (Sheth, Nijhawan, & Shimojo, Nat. Neurosci., 3, 489, 2000). This shift is quantified by the amount of time ahead on the changing continuum, which is different for various types of features. A basic question is how our percepts are affected when an object has two continuously changing features (such as color and orientation) with different magnitudes of time ahead. This was addressed using a bar continuously changing in both color and orientation. Even though the two features were part of the same object, each feature maintained a distinctly different time ahead. This implies that observers perceived at each moment a combination of color and orientation that never was presented to the eye.
PMCID: PMC3492960  PMID: 22330369
24.  Episodic Representation of Diagnostic and Non-Diagnostic Object Color 
Visual cognition  2010;18(5):728-750.
In three experiments, we investigated transsaccadic object file representations. In each experiment, participants moved their eyes from a central fixation cross to a saccade target located between two peripheral objects. During the saccade, this preview display was replaced with a target display containing a single object to be named. On trials in which the target identity matched one of the preview objects, its color either matched or did not match the previewed object color. The results indicated that color changes disrupt perceptual continuity, but only for the class of objects for which color is diagnostic of object identity. When the color is not integral to identifying an object (for example, when the object is a letter or an object without a characteristic color), object continuity is preserved regardless of changes to the object's color. These results suggest that object features that are important for defining the object are incorporated into its episodic representation. Furthermore, the results are consistent with previous work showing that the quality of a feature's representation determines its importance in preserving continuity.
doi:10.1080/13506280903004190
PMCID: PMC3014584  PMID: 21218148
25.  Characterization of color CRT display systems for monochrome applications 
Journal of Digital Imaging  1999;12(3):102-113.
Soft-copy presentation of medical images is becoming more and more important as medical imaging is strongly moving toward digital technology, and health care facilities are converting to filmless hospital and radiological information management. Although most medical images are monochrome, frequently they are displayed on color CRTs, particularly if general-purpose workstations or PCs are used for medical viewing. In the present report, general measurement and modeling procedures for the characterization of color CRT monitors for monochrome presentation are introduced. The contributions from the three color channels (red, green, and blue) are weighted according to the spectral sensitivity of the human eye for photopic viewing. The luminance behavior and the resolution capabilities of color CRT monitors are analyzed with the help of photometer and charge-coupled device (CCD) camera measurements. For the evaluation of spatial resolution, a two-dimensional Fourier analysis of special test images containing white noise (broadband response) is employed. A stage model for a color CRT monitor is developed to discuss the effects of scanning and dot sampling. Furthermore, display intrinsic veiling glare and reflectivity of typical color CRT monitors are measured and compared with those of monochrome CRT monitors. The developed methods and models allow one to describe the image quality aspects of color monitors if they are applied for medical monochrome image presentation. Particularly, because of the reduced luminance and dynamic range of color monitors, the calibration and control of their luminance curves is a very important task. For present color CRT monitors, 1,280×1,024 turns out to be an intrinsic limit for the displayable matrix of medical images.
doi:10.1007/BF03168629
PMCID: PMC3452435  PMID: 10461573
monitor characterization; color CRT monitors; soft-copy viewing; image quality

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