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1.  Nitric oxide in plants: an assessment of the current state of knowledge 
AoB Plants  2013;5:pls052.
Nitric oxide (NO) is a plant signal contributing to plant stress responses and development. We here review some of the key advances in this field but also highlight certain key aspects of plant NO biology that require further attention.
Background and aims
After a series of seminal works during the last decade of the 20th century, nitric oxide (NO) is now firmly placed in the pantheon of plant signals. Nitric oxide acts in plant–microbe interactions, responses to abiotic stress, stomatal regulation and a range of developmental processes. By considering the recent advances in plant NO biology, this review will highlight certain key aspects that require further attention.
Scope and conclusions
The following questions will be considered. While cytosolic nitrate reductase is an important source of NO, the contributions of other mechanisms, including a poorly defined arginine oxidizing activity, need to be characterized at the molecular level. Other oxidative pathways utilizing polyamine and hydroxylamine also need further attention. Nitric oxide action is dependent on its concentration and spatial generation patterns. However, no single technology currently available is able to provide accurate in planta measurements of spatio-temporal patterns of NO production. It is also the case that pharmaceutical NO donors are used in studies, sometimes with little consideration of the kinetics of NO production. We here include in planta assessments of NO production from diethylamine nitric oxide, S-nitrosoglutathione and sodium nitroprusside following infiltration of tobacco leaves, which could aid workers in their experiments. Further, based on current data it is difficult to define a bespoke plant NO signalling pathway, but rather NO appears to act as a modifier of other signalling pathways. Thus, early reports that NO signalling involves cGMP—as in animal systems—require revisiting. Finally, as plants are exposed to NO from a number of external sources, investigations into the control of NO scavenging by such as non-symbiotic haemoglobins and other sinks for NO should feature more highly. By crystallizing these questions the authors encourage their resolution through the concerted efforts of the plant NO community.
doi:10.1093/aobpla/pls052
PMCID: PMC3560241  PMID: 23372921
2.  Mechanisms for calcium sensing receptor-regulated stomatal closure in response to the extracellular calcium signal 
Plant Signaling & Behavior  2012;7(2):289-291.
In Arabidopsis, extracellular calcium (Ca2+o) promotes intracellular calcium (Ca2+i) transients and stomatal closure, which has been found to be regulated by the calcium sensing receptor (CAS). However, the detailed pathways for transducting the Ca2+o signal by CAS are still unclear. We found that nitric oxide (NO) and the hydrogen peroxide (H2O2) accumulated in the guard cell chloroplast were the two elements that act downstream of the CAS signaling and trigger the stomatal closure by prolonging Ca2+i transients.1 Here we provide more commentary on CAS-regulated H2O2 generation from chloroplast and Ca2+i transients in response to Ca2+o, as well as other potential mechanisms that may be involved in the CAS signaling pathway.
doi:10.4161/psb.18882
PMCID: PMC3405689  PMID: 22415046
calcium-sensing receptor; CAS; chloroplast; extracellular calcium signaling; guard cells; hydrogen peroxide; inositol 1,4,5-triphosphate; nitric oxide; phosphatidic acid; stomatal closure
3.  Role of ethylene receptors during senescence and ripening in horticultural crops 
Plant Signaling & Behavior  2012;7(7):827-846.
The past two decades have been rewarding in terms of deciphering the ethylene signal transduction and functional validation of the ethylene receptor and downstream genes involved in the cascade. Our knowledge of ethylene receptors and its signal transduction pathway provides us a robust platform where we can think of manipulating and regulating ethylene sensitivity by the use of genetic engineering and making transgenic. This review focuses on ethylene perception, receptor mediated regulation of ethylene biosynthesis, role of ethylene receptors in flower senescence, fruit ripening and other effects induced by ethylene. The expression behavior of the receptor and downstream molecules in climacteric and non climacteric crops is also elaborated upon. Possible strategies and recent advances in altering the ethylene sensitivity of plants using ethylene receptor genes in an attempt to modulate the regulation and sensitivity to ethylene have also been discussed. Not only will these transgenic plants be a boon to post-harvest physiology and crop improvement but, it will also help us in discovering the mechanism of regulation of ethylene sensitivity.
doi:10.4161/psb.20321
PMCID: PMC3583974  PMID: 22751331
ethylene insensitive; ethylene receptors; ethylene; negative regulation; perception; sensitivity; transgenic
4.  Nitric oxide and frataxin: two players contributing to maintain cellular iron homeostasis 
Annals of Botany  2009;105(5):801-810.
Background
Nitric oxide (NO) is a signalling and physiologically active molecule in animals, plants and bacteria. The specificity of the molecular mechanism(s) involved in transducing the NO signal within and between cells and tissues is still poorly understood. NO has been shown to be an emerging and potent signal molecule in plant growth, development and stress physiology. The NO donor S-nitrosoglutathion (GSNO) was shown to be a biologically active compound in plants and a candidate for NO storage and/or mobilization between plant tissues and cells. NO has been implicated as a central component in maintaining iron bioavailavility in plants.
Scope and Conclusions
Iron is an essential nutrient for almost all organisms. This review presents an overview of the functions of NO in iron metabolism in animals and discusses how NO production constitutes a key response in plant iron sensing and availability. In plants, NO drives downstream responses to both iron deficiency and iron overload. NO-mediated improvement of iron nutrition in plants growing under iron-deficient conditions represents a powerful tool to cope with soils displaying low iron availability. An interconversion between different redox forms based on the iron and NO status of the plant cells might be the core of a metabolic process driving plant iron homeostasis. Frataxin, a recently identified protein in plants, plays an important role in mitochondria biogenesis and in maintaining mitochondrial iron homeostasis. Evidence regarding the interaction between frataxin, NO and iron from analysis of frataxin knock-down Arabidopsis thaliana mutants is reviewed and discussed.
doi:10.1093/aob/mcp147
PMCID: PMC2859906  PMID: 19556267
Nitric oxide; iron homeostasis; frataxin; strategy I; strategy II; dinitrosyl iron complexes; oxidative stress
5.  Joining forces 
Plant Signaling & Behavior  2009;4(10):933-941.
In flowering plants, gravity perception appears to involve the sedimentation of starch-filled plastids, called amyloplasts, within specialized cells (the statocytes) of shoots (endodermal cells) and roots (columella cells). Unfortunately, how the physical information derived from amyloplast sedimentation is converted into a biochemical signal that promotes organ gravitropic curvature remains largely unknown. Recent results suggest an involvement of the Translocon of the Outer Envelope of (Chloro) plastids (TOC) in early phases of gravity signal transduction within the statocytes. This review summarizes our current knowledge of the molecular mechanisms that govern gravity signal transduction in flowering plants and summarizes models that attempt to explain the contribution of TOC proteins in this important behavioral plant growth response to its mechanical environment.
PMCID: PMC2801356  PMID: 19826232
gravitropism; root; amyloplast; TOC complex; TOC132; TOC75
6.  Glutathione Peroxidase-1 in Health and Disease: From Molecular Mechanisms to Therapeutic Opportunities 
Antioxidants & Redox Signaling  2011;15(7):1957-1997.
Abstract
Reactive oxygen species, such as superoxide and hydrogen peroxide, are generated in all cells by mitochondrial and enzymatic sources. Left unchecked, these reactive species can cause oxidative damage to DNA, proteins, and membrane lipids. Glutathione peroxidase-1 (GPx-1) is an intracellular antioxidant enzyme that enzymatically reduces hydrogen peroxide to water to limit its harmful effects. Certain reactive oxygen species, such as hydrogen peroxide, are also essential for growth factor-mediated signal transduction, mitochondrial function, and maintenance of normal thiol redox-balance. Thus, by limiting hydrogen peroxide accumulation, GPx-1 also modulates these processes. This review explores the molecular mechanisms involved in regulating the expression and function of GPx-1, with an emphasis on the role of GPx-1 in modulating cellular oxidant stress and redox-mediated responses. As a selenocysteine-containing enzyme, GPx-1 expression is subject to unique forms of regulation involving the trace mineral selenium and selenocysteine incorporation during translation. In addition, GPx-1 has been implicated in the development and prevention of many common and complex diseases, including cancer and cardiovascular disease. This review discusses the role of GPx-1 in these diseases and speculates on potential future therapies to harness the beneficial effects of this ubiquitous antioxidant enzyme. Antioxid. Redox Signal. 15, 1957–1997.
I. Introduction
II. GPx‐1 Activity
A. Enzymatic mechanisms of GPx
B. Structure and function: analysis of the active site
C. Inhibitors of GPx
D. Comparison among mammalian GPxs 1–4
III. Regulation of GPx‐1 Expression and Activity
A. Transcriptional regulation
B. Post‐transcriptional and translational regulation
1. Basic mechanisms of Sec incorporation
2. Selenium, nonsense‐mediated decay of GPx‐1 mRNA, and translational repression
3. Post‐transcriptional upregulation of GPx‐1
4. Inhibition of GPx‐1 translation
C. Post‐translational regulation
1. Sec oxidation
2. Stimulation by signal transduction and/or protein–protein interactions
IV. GPx‐1 and Oxidant‐Dependent Cellular Processes
A. Oxidative damage and cell death, apoptosis, and injury
1. Role of oxidants in cell death and apoptosis
2. Role of GPx‐1 in cell death and apoptosis
3. GPx‐1 and response to in vivo ROS
B. Redox‐dependent cell signaling, growth, and survival
V. GPx‐1 and Cancer
A. GPx‐1 and the mechanisms of cancer susceptibility
B. GPx‐1 and genetic polymorphisms
C. GPx‐1: genetic polymorphisms and cancer risk
1. Breast cancer
2. Lung cancer
3. Prostate cancer
4. Bladder cancer
5. Other cancers
VI. GPx‐1, Diabetes, and Cardiovascular Disease
A. GPx‐1 and the mechanisms of susceptibility to diabetes and cardiovascular disease
1. Diabetes mellitus
2. Cardiac dysfunction and toxicity
3. Ischemia/reperfusion injury, angiogenesis, and EPC function
4. Endothelial dysfunction and vascular tone
5. Inflammation and atherogenesis
B. Epidemiologic and genetic studies of GPx‐1 and cardiovascular disease
VII. GPx‐1 and Future Directions for Therapeutic Applications
doi:10.1089/ars.2010.3586
PMCID: PMC3159114  PMID: 21087145
7.  Discovering mechanisms of signaling-mediated cysteine oxidation 
Summary
Accumulating evidence reveals hydrogen peroxide as a key player both as a damaging agent and, from emerging evidence over the last decade, as a second messenger in intracellular signaling. This rather mild oxidant acts upon downstream targets within signaling cascades to modulate the activity of a host of enzymes (e.g. phosphatases and kinases) and transcriptional regulators through chemoselective oxidation of cysteine residues. With the recent development of specific detection reagents for hydrogen peroxide and new chemical tools to detect the generation of the initial oxidation product, sulfenic acid, on reactive cysteines within target proteins, the scene is set to gain a better understanding of the mechanisms through which hydrogen peroxide acts as a second messenger in cell signaling.
doi:10.1016/j.cbpa.2008.01.021
PMCID: PMC2408887  PMID: 18282483
8.  MAPK signaling in plant hormone ethylene signal transduction 
Plant Signaling & Behavior  2008;3(10):848-849.
The signal transduction pathway of the plant stress and defense hormone, ethylene, has been extensively elucidated using the plant genetic model Arabidopsis over the last two decades. Among others, a MAPKKK CTR1 was identified as a negative regulator that has led to the speculation of MAPK involvement in ethylene signaling. However, it remained unclear how the MAPK modules acting downstream of the receptors to mediate ethylene signaling. We have recently presented new evidence that the MKK9-MPK3/6 modules identified by combined functional genomic and genetic screens mediate ethylene signaling, which is negatively regulated by the genetically identified CTR1-dependent cascades. Our genetic studies show consistently that the MKK9-MPK3/MPK6 modules act downstream of the ethylene receptors. Biochemical and transgenic analyses further demonstrated that the positive-acting and negative-acting MAPK activities are integrated and act simultaneously to control the key transcription factor EIN3 through dual phosphorylations to regulate the EIN3 protein stability and downstream transcription cascades. This study has revealed a novel molecular mechanism that defines the specificity of complex MAPK signaling. Comprehensive elucidation of MAPK cascades and the underlying molecular mechanisms would provide more precise explanations for how plant cells utilize MAPK cascades to control specific downstream outputs in response to distinct stimuli.
PMCID: PMC2634393  PMID: 19704518
ethylene; EIN3; CTR1; MKK9; MPK3; MPK6
9.  The Histidine Kinase AHK5 Integrates Endogenous and Environmental Signals in Arabidopsis Guard Cells 
PLoS ONE  2008;3(6):e2491.
Background
Stomatal guard cells monitor and respond to environmental and endogenous signals such that the stomatal aperture is continually optimised for water use efficiency. A key signalling molecule produced in guard cells in response to plant hormones, light, carbon dioxide and pathogen-derived signals is hydrogen peroxide (H2O2). The mechanisms by which H2O2 integrates multiple signals via specific signalling pathways leading to stomatal closure is not known.
Principal Findings
Here, we identify a pathway by which H2O2, derived from endogenous and environmental stimuli, is sensed and transduced to effect stomatal closure. Histidine kinases (HK) are part of two-component signal transduction systems that act to integrate environmental stimuli into a cellular response via a phosphotransfer relay mechanism. There is little known about the function of the HK AHK5 in Arabidopsis thaliana. Here we report that in addition to the predicted cytoplasmic localisation of this protein, AHK5 also appears to co-localise to the plasma membrane. Although AHK5 is expressed at low levels in guard cells, we identify a unique role for AHK5 in stomatal signalling. Arabidopsis mutants lacking AHK5 show reduced stomatal closure in response to H2O2, which is reversed by complementation with the wild type gene. Over-expression of AHK5 results in constitutively less stomatal closure. Abiotic stimuli that generate endogenous H2O2, such as darkness, nitric oxide and the phytohormone ethylene, also show reduced stomatal closure in the ahk5 mutants. However, ABA caused closure, dark adaptation induced H2O2 production and H2O2 induced NO synthesis in mutants. Treatment with the bacterial pathogen associated molecular pattern (PAMP) flagellin, but not elf peptide, also exhibited reduced stomatal closure and H2O2 generation in ahk5 mutants.
Significance
Our findings identify an integral signalling function for AHK5 that acts to integrate multiple signals via H2O2 homeostasis and is independent of ABA signalling in guard cells.
doi:10.1371/journal.pone.0002491
PMCID: PMC2424244  PMID: 18560512
10.  Mitogen-activated protein kinase signaling in plants under abiotic stress 
Plant Signaling & Behavior  2011;6(2):196-203.
Mitogen-activated protein kinase cascade is evolutionarily conserved signal transduction module involved in transducing extracellular signals to the nucleus for appropriate cellular adjustment. This cascade consists essentially of three components, a MAPK kinase kinase (MAPKKK), a MAPK kinase (MAPKK) and a MAPK connected to each other by the event of phosphorylation. These kinases play various roles in intra- and extra-cellular signaling in plants by transferring the information from sensors to responses. Signaling through MAP kinase cascade can lead to cellular responses including cell division, differentiation as well as responses to various stresses. MAPK signaling has also been associated with hormonal responses. In plants, MAP kinases are represented by multigene families and are involved in efficient transmission of specific stimuli and also involved in the regulation of the antioxidant defense system in response to stress signaling. In the current review we summarize and investigate the participation of MAPKs as possible mediators of various abiotic stresses in plants.
doi:10.4161/psb.6.2.14701
PMCID: PMC3121978  PMID: 21512321
abiotic stress; cross talk; mitogen-activated protein kinases; heat map; MAPK signaling; signal transduction; stress signaling
11.  The beginnings of crop phosphoproteomics: exploring early warning systems of stress 
This review examines why a knowledge of plant protein phosphorylation events is important in devising strategies to protect crops from both biotic and abiotic stresses, and why proteomics should be included when studying stress pathways. Most of the achievements in elucidating phospho-signaling pathways in biotic and abiotic stress are reported from model systems: while these are discussed, this review attempts mainly to focus on work done with crops, with examples of achievements reported from rice, maize, wheat, grape, Brassica, tomato, and soy bean after cold acclimation, hormonal and oxidative hydrogen peroxide treatment, salt stress, mechanical wounding, or pathogen challenge. The challenges that remain to transfer this information into a format that can be used to protect crops against biotic and abiotic stresses are enormous. The tremendous increase in the speed and ease of DNA sequencing is poised to reveal the whole genomes of many crop species in the near future, which will facilitate phosphoproteomics and phosphogenomics research.
doi:10.3389/fpls.2012.00144
PMCID: PMC3387783  PMID: 22783265
abiotic stress; biotic stress; phosphoproteomics; signaling
12.  Jasmonates: An Update on Biosynthesis, Signal Transduction and Action in Plant Stress Response, Growth and Development 
Annals of Botany  2007;100(4):681-697.
Background
Jasmonates are ubiquitously occurring lipid-derived compounds with signal functions in plant responses to abiotic and biotic stresses, as well as in plant growth and development. Jasmonic acid and its various metabolites are members of the oxylipin family. Many of them alter gene expression positively or negatively in a regulatory network with synergistic and antagonistic effects in relation to other plant hormones such as salicylate, auxin, ethylene and abscisic acid.
Scope
This review summarizes biosynthesis and signal transduction of jasmonates with emphasis on new findings in relation to enzymes, their crystal structure, new compounds detected in the oxylipin and jasmonate families, and newly found functions.
Conclusions
Crystal structure of enzymes in jasmonate biosynthesis, increasing number of jasmonate metabolites and newly identified components of the jasmonate signal-transduction pathway, including specifically acting transcription factors, have led to new insights into jasmonate action, but its receptor(s) is/are still missing, in contrast to all other plant hormones.
doi:10.1093/aob/mcm079
PMCID: PMC2749622  PMID: 17513307
Oxylipins; jasmonic acid; jasmonate metabolites; enzymes in biosynthesis and metabolism; signal function
13.  Ubiquitin, Hormones and Biotic Stress in Plants 
Annals of Botany  2007;99(5):787-822.
Background
The covalent attachment of ubiquitin to a substrate protein changes its fate. Notably, proteins typically tagged with a lysine48-linked polyubiquitin chain become substrates for degradation by the 26S proteasome. In recent years many experiments have been performed to characterize the proteins involved in the ubiquitylation process and to identify their substrates, in order to understand better the mechanisms that link specific protein degradation events to regulation of plant growth and development.
Scope
This review focuses on the role that ubiquitin plays in hormone synthesis, hormonal signalling cascades and plant defence mechanisms. Several examples are given of how targeted degradation of proteins affects downstream transcriptional regulation of hormone-responsive genes in the auxin, gibberellin, abscisic acid, ethylene and jasmonate signalling pathways. Additional experiments suggest that ubiquitin-mediated proteolysis may also act upstream of the hormonal signalling cascades by regulating hormone biosynthesis, transport and perception. Moreover, several experiments demonstrate that hormonal cross-talk can occur at the level of proteolysis. The more recently established role of the ubiquitin/proteasome system (UPS) in defence against biotic threats is also reviewed.
Conclusions
The UPS has been implicated in the regulation of almost every developmental process in plants, from embryogenesis to floral organ production probably through its central role in many hormone pathways. More recent evidence provides molecular mechanisms for hormonal cross-talk and links the UPS system to biotic defence responses.
doi:10.1093/aob/mcl255
PMCID: PMC2802907  PMID: 17220175
Ubiquitin; E3 ligase; RING; U-Box; SCF; CRL; ubiquitylation; regulated proteolysis; plant defence; hormonal signalling; biotic stress; pathogen response
14.  A common response to common danger? Comparison of animal and plant signaling pathways involved in cadmium sensing 
Exposure to cadmium results in disturbances in cell homeostasis in all living organisms. The first response to stress factors, including cadmium, is activation of signal transduction pathways that mobilize cell defense mechanisms. The aim of this review is a comparison between the signaling network triggered by Cd in plants and animals. Despite differences in the structure and physiology of plant and animal cells, their cadmium signal transduction pathways share many common elements. These elements include signaling molecules such as ROS, Ca2+ and NO, the involvement of phospholipase C, mitogen-activated protein kinase cascades, and activation of transcription factors. Undoubtedly, both animals and plants also possess specific signaling pathways. In case of animals, Wnt/β-catenin, sonic hedgehog and oestorgen signaling are engaged in the transduction of cadmium signal. Plant specific signal transduction pathways include signaling mediated by plant hormones. The role of ethylene and jasmonic, salicylic and abscisic acid in plant response to cadmium is also discussed.
doi:10.1007/s12079-012-0173-3
PMCID: PMC3497896  PMID: 22865263
Calcium ions; Cadmium; Nitric oxide; Mitogen-activated protein kinases; Reactive oxygen species; Transcription factors
15.  Induction of alternative respiratory pathway involves nitric oxide, hydrogen peroxide and ethylene under salt stress 
Plant Signaling & Behavior  2010;5(12):1636-1637.
Alternative respiratory pathway (AP) plays an important role in plant thermogenesis, fruit ripening and responses to environmental stresses. AP may participate in the adaptation to salt stress since salt stress increased the activity of the AP. Recently, new evidence revealed that ethylene and hydrogen peroxide (H2O2) are involved in the salt-induced increase of the AP, which plays an important role in salt tolerance in Arabidopsis callus, and ethylene may be acting downstream of H2O2. Recent observations also indicated both ethylene and nitric oxide (NO) act as signaling molecules in responses to salt stress, and ethylene may be a part of the downstream signal molecular in NO action. In this addendum, a hypothetical model for NO function in regulation of H2O2- and ethylene-mediated induction of AP under salt stress is presented.
doi:10.4161/psb.5.12.13775
PMCID: PMC3115120  PMID: 21139431
alternative respiratory pathway; ethylene; hydrogen peroxide; nitric oxide; salt stress; signaling molecule
16.  Receptor-like kinases as surface regulators for RAC/ROP-mediated pollen tube growth and interaction with the pistil 
AoB Plants  2011;2011:plr017.
Pollen tube growth is regulated by female tissue-produced factors that facilitate growth and provide directional guidance. We discuss here signal perception and transduction molecules on the male and the female cell surfaces mediate male-female interactions that underlie successful reproduction.
Background
RAC/ROPs are RHO-type GTPases and are known to play diverse signalling roles in plants. Cytoplasmic RAC/ROPs are recruited to the cell membrane and activated in response to extracellular signals perceived and mediated by cell surface-located signalling assemblies, transducing the signals to regulate cellular processes. More than any other cell types in plants, pollen tubes depend on continuous interactions with an extracellular environment produced by their surrounding tissues as they grow within the female organ pistil to deliver sperm to the female gametophyte for fertilization.
Scope
We review studies on pollen tube growth that provide compelling evidence indicating that RAC/ROPs are crucial for regulating the cellular processes that underlie the polarized cell growth process. Efforts to identify cell surface regulators that mediate extracellular signals also point to RAC/ROPs being the molecular switches targeted by growth-regulating female factors for modulation to mediate pollination and fertilization. We discuss a large volume of work spanning more than two decades on a family of pollen-specific receptor kinases and some recent studies on members of the FERONIA family of receptor-like kinases (RLKs).
Significance
The research described shows the crucial roles that two RLK families play in transducing signals from growth regulatory factors to the RAC/ROP switch at the pollen tube apex to mediate and target pollen tube growth to the female gametophyte and signal its disintegration to achieve fertilization once inside the female chamber.
doi:10.1093/aobpla/plr017
PMCID: PMC3158858  PMID: 22476487
17.  Molecular Characterization of a Strawberry FaASR Gene in Relation to Fruit Ripening 
PLoS ONE  2011;6(9):e24649.
Background
ABA-, stress- and ripening-induced (ASR) proteins have been reported to act as a downstream component involved in ABA signal transduction. Although much attention has been paid to the roles of ASR in plant development and stress responses, the mechanisms by which ABA regulate fruit ripening at the molecular level are not fully understood. In the present work, a strawberry ASR gene was isolated and characterized (FaASR), and a polyclonal antibody against FaASR protein was prepared. Furthermore, the effects of ABA, applied to two different developmental stages of strawberry, on fruit ripening and the expression of FaASR at transcriptional and translational levels were investigated.
Methodology/Principal Findings
FaASR, localized in the cytoplasm and nucleus, contained 193 amino acids and shared common features with other plant ASRs. It also functioned as a transcriptional activator in yeast with trans-activation activity in the N-terminus. During strawberry fruit development, endogenous ABA content, levels of FaASR mRNA and protein increased significantly at the initiation of ripening at a white (W) fruit developmental stage. More importantly, application of exogenous ABA to large green (LG) fruit and W fruit markedly increased endogenous ABA content, accelerated fruit ripening, and greatly enhanced the expression of FaASR transcripts and the accumulation of FaASR protein simultaneously.
Conclusions
These results indicate that FaASR may be involved in strawberry fruit ripening. The observed increase in endogenous ABA content, and enhanced FaASR expression at transcriptional and translational levels in response to ABA treatment might partially contribute to the acceleration of strawberry fruit ripening.
doi:10.1371/journal.pone.0024649
PMCID: PMC3167850  PMID: 21915355
18.  More than two decades of research on insect neuropeptide GPCRs: an overview 
This review focuses on the state of the art on neuropeptide receptors in insects. Most of these receptors are G protein-coupled receptors (GPCRs) and are involved in the regulation of virtually all physiological processes during an insect's life. More than 20 years ago a milestone in invertebrate endocrinology was achieved with the characterization of the first insect neuropeptide receptor, i.e., the Drosophila tachykinin-like receptor. However, it took until the release of the Drosophila genome in 2000 that research on neuropeptide receptors boosted. In the last decade a plethora of genomic information of other insect species also became available, leading to a better insight in the functions and evolution of the neuropeptide signaling systems and their intracellular pathways. It became clear that some of these systems are conserved among all insect species, indicating that they fulfill crucial roles in their physiological processes. Meanwhile, other signaling systems seem to be lost in several insect orders or species, suggesting that their actions were superfluous in those insects, or that other neuropeptides have taken over their functions. It is striking that the deorphanization of neuropeptide GPCRs gets much attention, but the subsequent unraveling of the intracellular pathways they elicit, or their physiological functions are often hardly examined. Especially in insects besides Drosophila this information is scarce if not absent. And although great progress made in characterizing neuropeptide signaling systems, even in Drosophila several predicted neuropeptide receptors remain orphan, awaiting for their endogenous ligand to be determined. The present review gives a précis of the insect neuropeptide receptor research of the last two decades. But it has to be emphasized that the work done so far is only the tip of the iceberg and our comprehensive understanding of these important signaling systems will still increase substantially in the coming years.
doi:10.3389/fendo.2012.00151
PMCID: PMC3510462  PMID: 23226142
insects; neuropeptides; G protein-coupled receptors; signal transduction; neurobiology
19.  Epigenetic responses to stress: triple defense? 
Current Opinion in Plant Biology  2012;15(5):568-573.
Highlights
► Epigenetic control is involved in stress signaling and stress responses. ► Stress can modify epigenetic regulation at many different levels. ► Epigenetic and genetic components of stress responses are connected. ► Epigenetic diversity might be an important factor in stress adaptation and evolution.
Stressful conditions for plants can originate from numerous physical, chemical and biological factors, and plants have developed a plethora of survival strategies including developmental and morphological adaptations, specific signaling and defense pathways as well as innate and acquired immunity. While it has become clear in recent years that many stress responses involve epigenetic components, we are far from understanding the mechanisms and molecular interactions. Extending our knowledge is fundamental, not least for plant breeding and conservation biology. This review will highlight recent insights into epigenetic stress responses at the level of signaling, chromatin modification, and potentially heritable consequences.
doi:10.1016/j.pbi.2012.08.007
PMCID: PMC3508409  PMID: 22960026
20.  Evolution of Catalases from Bacteria to Humans 
Antioxidants & redox signaling  2008;10(9):1527-1548.
Excessive hydrogen peroxide is harmful for almost all cell components, so its rapid and efficient removal is of essential importance for aerobically living organisms. Conversely, hydrogen peroxide acts as a second messenger in signal-transduction pathways. H2O2 is degraded by peroxidases and catalases, the latter being able both to reduce H2O2 to water and to oxidize it to molecular oxygen. Nature has evolved three protein families that are able to catalyze this dismutation at reasonable rates. Two of the protein families are heme enzymes: typical catalases and catalase–peroxidases. Typical catalases comprise the most abundant group found in Eubacteria, Archaeabacteria, Protista, Fungi, Plantae, and Animalia, whereas catalase–peroxidases are not found in plants and animals and exhibit both catalatic and peroxidatic activities. The third group is a minor bacterial protein family with a dimanganese active site called manganese catalases. Although catalyzing the same reaction (2 H2O2 → 2 H2O + O2), the three groups differ significantly in their overall and active-site architecture and the mechanism of reaction. Here, we present an overview of the distribution, phylogeny, structure, and function of these enzymes. Additionally, we report about their physiologic role, response to oxidative stress, and about diseases related to catalase deficiency in humans.
doi:10.1089/ars.2008.2046
PMCID: PMC2959186  PMID: 18498226
21.  Photosynthesis-dependent anthocyanin pigmentation in arabidopsis 
Plant Signaling & Behavior  2011;6(1):23-25.
Light is the ultimate energy source for photo-autotrophs on earth. For green plants, however, it can also be toxic under certain stressful environmental conditions and at critical developmental stages. Anthocyanins, a class of flavonoids, act as an effective screening mechanism that allows plant survival and proliferation under occasional periods of harmful irradiation through modulation of light absorption. Apart from light-sensing through photoreceptors such as phytochrome and cryptochrome, plants use the photosynthetic electron transfer (PET) chain to integrate light information. The redox status of the plastoquinone (PQ) pool of the PET chain regulates anthocyanin biosynthesis genes, together with the plant hormone ethylene and plant hormone-like sugars. A complex signaling apparatus in acyanic cells appears to transduce information to cyanic cells to regulate anthocyanin production through an intercellular signaling pathway that remains largely uncharacterized. This review will highlight recent advances in this field and their implications for the regulation of anthocyanin pigmentation.
doi:10.4161/psb.6.1.14082
PMCID: PMC3121999  PMID: 21248473
anthocyanin induction; ethylene; sugar; light; photosynthesis; mesophyll-derived signal
22.  Signal Transduction by Vascular Endothelial Growth Factor Receptors 
Vascular endothelial growth factors (VEGFs) are master regulators of vascular development and of blood and lymphatic vessel function during health and disease in the adult. It is therefore important to understand the mechanism of action of this family of five mammalian ligands, which act through three receptor tyrosine kinases (RTKs). In addition, coreceptors like neuropilins (NRPs) and integrins associate with the ligand/receptor signaling complex and modulate the output. Therapeutics to block several of the VEGF signaling components have been developed with the aim to halt blood vessel formation, angiogenesis, in diseases that involve tissue growth and inflammation, such as cancer. In this review, we outline the current information on VEGF signal transduction in relation to blood and lymphatic vessel biology.
In mammals, five vascular endothelial growth factors (VEGFs) act through three receptor tyrosine kinases to control vascular development and function.
doi:10.1101/cshperspect.a006502
PMCID: PMC3385940  PMID: 22762016
23.  Abscisic acid perception and signaling transduction in strawberry 
Plant Signaling & Behavior  2011;6(12):1950-1953.
On basis of fruit differential respiration and ethylene effects, climacteric and non-climacteric fruits have been classically defined. Over the past decades, the molecular mechanisms of climacteric fruit ripening were abundantly described and found to focus on ethylene perception and signaling transduction. In contrast, until our most recent breakthroughs, much progress has been made toward understanding the signaling perception and transduction mechanisms for abscisic acid (ABA) in strawberry, a model for non-climacteric fruit ripening. Our reports not only have provided several lines of strong evidences for ABA-regulated ripening of strawberry fruit, but also have demonstrated that homology proteins of Arabidopsis ABA receptors, including PYR/PYL/RCAR and ABAR/CHLH, act as positive regulators of ripening in response to ABA. These receptors also trigger a set of ABA downstream signaling components, and determine significant changes in the expression levels of both sugar and pigment metabolism-related genes that are closely associated with ripening. Soluble sugars, especially sucrose, may act as a signal molecular to trigger ABA accumulation through an enzymatic action of 9-cis-epoxycarotenoid dioxygenase 1 (FaNCED1). This mini-review offers an overview of these processes and also outlines the possible, molecular mechanisms for ABA in the regulation of strawberry fruit ripening through the ABA receptors.
doi:10.4161/psb.6.12.18024
PMCID: PMC3337185  PMID: 22095148
ABA receptor; abscisic acid (ABA); fruit ripening; signal perception and transduction; strawberry
24.  Role of Nitric Oxide and Hydrogen Peroxide During the Salt Resistance Response 
Plant Signaling & Behavior  2007;2(6):473-474.
Ion homeostasis is essential for plant cell resistance to salt stress. Under salt stress, to avoid cellular damage and nutrient deficiency, plant cells need to maintain adequate K nutrition and a favorable K to Na ratio in the cytosol. Recent observations revealed that both nitric oxide (NO) and hydrogen peroxide (H2O2) act as signaling molecules to regulate K to Na ratio in calluses from Populus euphratica under salt stress. Evidence indicated that NO mediating H2O2 causes salt resistance via the action of plasma membrane H+-ATPase but that activity of plasma membrane NADPH oxidase is dependent on NO. Our study demonstrated the signaling transduction pathway. In this addendum, we proposed a testable hypothesis for NO function in regulation of H2O2 mediating salt resistance.
PMCID: PMC2634338  PMID: 19704588
hydrogen peroxide; nitric oxide; signaling molecule; salt resistance
25.  Polyamines: ubiquitous polycations with unique roles in growth and stress responses 
Annals of Botany  2009;105(1):1-6.
Background
Polyamines are small polycationic molecules found ubiquitously in all organisms and function in a wide variety of biological processes. In the past decade, molecular and genetic studies using mutants and transgenic plants with an altered activity of enzymes involved in polyamine biosynthesis have contributed much to a better understanding of the biological functions of polyamines in plants.
Possible roles
Spermidine is essential for survival of Arabidopsis embryos. One of the reasons may lie in the fact that spermidine serves as a substrate for the lysine → hypusine post-translational modification of the eukaryotic translation initiation factor 5A, which is essential in all eukaryotic cells. Spermine is not essential but plays a role in stress responses, probably through the modulation of cation channel activities, and as a source of hydrogen peroxide during pathogen infection. Thermospermine, an isomer of spermine, is involved in stem elongation, possibly by acting on the regulation of upstream open reading frame-mediated translation.
Conclusions
The mechanisms of action of polyamines differ greatly from those of plant hormones. There remain numerous unanswered questions regarding polyamines in plants, such as transport systems and polyamine-responsive genes. Further studies on the action of polyamines will undoubtedly provide a new understanding of plant growth regulation and stress responses.
doi:10.1093/aob/mcp259
PMCID: PMC2794062  PMID: 19828463
Polyamines; putrescine; spermidine; spermine; thermospermine; ACL5; translation; uORF

Results 1-25 (578106)