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The title compound, C40H64O12, crystallizes in a pseudomerohedrally twinned primitive monoclinic cell with similar contributions of the two twin components. There are two symmetry-independent half-molecules of nonactin in the asymmetric unit. Each molecule has a pseudo-S
4 symmetry and resides on a crystallographic twofold axis; the axes pass through the molecular center of mass and are perpendicular to the plane of the macrocycle. The literature description of the room-temperature structure of nonactin as an order–disorder structure in an orthorhombic unit cell is corrected. We report a low-temperature high-precision ordered structure of ‘free’ nonactin that allowed for the first time precise determination of its bond distances and angles. It possesses an unfolded and more planar geometry than its complexes with encapsulated Na+, K+, Cs+, Ca2+ or NH4
+ cations that exhibit more isometric overall conformations.
doi:10.1107/S0108270109033083
PMCID: PMC2816929
PMID: 19805886
A case of imperfect pseudo-merohedral twinning in monoclinic crystals of fungal fatty acid synthase is discussed. A space-group transition during crystal dehydration resulted in a Moiré pattern-like interference of the twinned diffraction patterns.
The recent high-resolution structures of fungal fatty acid synthase (FAS) have provided new insights into the principles of fatty acid biosynthesis by large multifunctional enzymes. The crystallographic phase problem for the 2.6 MDa fungal FAS was initially solved to 5 Å resolution using two crystal forms from Thermomyces lanuginosus. Monoclinic crystals in space group P21 were obtained from orthorhombic crystals in space group P212121 by dehydration. Here, it is shown how this space-group transition induced imperfect pseudo-merohedral twinning in the monoclinic crystal, giving rise to a Moiré pattern-like interference of the two twin-related reciprocal lattices. The strategy for processing the twinned diffraction images and obtaining a quantitative analysis is presented. The twinning is also related to the packing of the molecules in the two crystal forms, which was derived from self-rotation function analysis and molecular-replacement solutions using a low-resolution electron microscopy map as a search model.
doi:10.1107/S0907444909000778
PMCID: PMC2631638
PMID: 19171964
imperfect pseudo-merohedral twinning; fungal fatty acid synthase
In the cobaltocenium group of the title compound, [AuCo(C5H5)(C17H14P)Cl]PF6, the substituted cyclopentadienyl (Cps) and the unsubstituted cyclopentadienyl (Cp) ring planes are almost parallel, making a dihedral angle of 3.1 (3)°. The C atoms in Cp and Cps are in an eclipsed conformation. The AuI atom is coordinated by a P atom from the diphenylphosphanyl group and a Cl atom in an almost linear arrangement [P—Au—Cl = 178.15–(7)°]. Two hexafluoridophosphate anions are each located on a twofold rotation axis. In the crystal, the complex cations and hexafluoridophosphate anions are linked via intermolecular C—H⋯F hydrogen bonds.
doi:10.1107/S1600536811018769
PMCID: PMC3120450
PMID: 21754675
The title compound, [V2Cl4O2(CH3CN)4], is a centrosymmetric dinuclear VIV complex associated with four molecules of acetonitrile. The coordination around both VIV atoms is essentially square-planar, involving three Cl atoms and one O atom [maximum deviation = 0.017 (3) Å for the O atom]. The augmented octahedral coordination of the metal atom is completed by the N atoms of acetonitrile ligands. The VIV atoms are linked by two Cl atoms, acting as bridging atoms. The crystal studied was a non-merohedral twin with a ratio of the two twin components of 0.8200 (3):0.1800 (3). Although Cl and O atoms are present as potential acceptors in the title compound, no hydrogen bonds were observed in the crystal structure.
doi:10.1107/S1600536811037184
PMCID: PMC3201240
PMID: 22058702
The crystal structure of the title compound, C14H21NO2S, is a polymorph of the structure reported by Khan et al. [Acta Cryst. (2009), E65, o2867] which is also monoclinic (space group P21/c). The unit cell in the title structure is approximately half the volume of the previously reported polymorph and the asymmetric unit of the title compound contains one molecule rather than two independent molecules in the other polymorph. In the title molecule, the cyclohexane ring is in the typical chair form. In the crystal structure, molecules are linked via weak intermolecular C—H⋯O interactions, forming a chain along the b-axis direction.
doi:10.1107/S160053680904762X
PMCID: PMC2972150
PMID: 21578833
The title salt, C12H24N+·NCS−, represents a monoclinic polymorph of the previously reported orthorhombic form [Khawar Rauf et al. (2008 ▶). Acta Cryst. E64, o366]. Two independent formula units comprise the asymmetric unit with the major difference in their molecular structures relating to the relative dispositions of the cyclohexyl rings [dihedral angles = 79.88 (6) and 67.72 (5)°]. Further, the independent anions form distinctive patterns of hydrogen-bonding interactions, i.e. 2 × N—H⋯N versus N—H⋯N and N—H⋯S. The resulting supramolecular architecture is a supramolecular chain along the c axis based on a square-wave topology.
doi:10.1107/S1600536811040001
PMCID: PMC3247581
PMID: 22219886
The title compound, [Au(C9H10NOS)(C18H33P)], represents a monoclinic polymorph to complement a previously reported triclinic (P
) polymorph [Hall et al. (1993 ▶). Aust. J. Chem.
46, 561–570 (unit-cell data only)]. The AuI atom is coordinated within an S,P-donor set that defines a slightly distorted linear geometry [S—Au—P = = 175.43 (3)°], with the distortion due in part to a close intramolecular Au⋯O contact [3.036 (2) Å]. In the crystal structure, molecules are arranged into supramolecular chains along the b axis mediated by C—H⋯π interactions.
doi:10.1107/S1600536810009086
PMCID: PMC2983808
PMID: 21580504
The crystallization and preliminary X-ray diffraction analysis of sarcosine dimethylglycine methyltransferase from H. halochoris is reported.
Sarcosine dimethylglycine methyltransferase (EC 2.1.1.157) is an enzyme from the extremely halophilic anaerobic bacterium Halorhodospira halochoris. This enzyme catalyzes the twofold methylation of sarcosine to betaine, with S-adenosylmethionine (AdoMet) as the methyl-group donor. This study presents the crystallization and preliminary X-ray analysis of recombinant sarcosine dimethylglycine methyltransferase produced in Escherichia coli. Mass spectroscopy was used to determine the purity and homogeneity of the enzyme material. Two different crystal forms, which initially appeared to be hexagonal and tetragonal, were obtained. However, on analyzing the diffraction data it was discovered that both crystal forms were pseudo-merohedrally twinned. The true crystal systems were monoclinic and orthorhombic. The monoclinic crystal diffracted to a maximum of 2.15 Å resolution and the orthorhombic crystal diffracted to 1.8 Å resolution.
doi:10.1107/S1744309109026232
PMCID: PMC2720339
PMID: 19652345
sarcosine dimethylglycine methyltransferase; Halorhodospira halochoris; twinning
The title complex, [Cu(C14H14N2O2)2]BF4, is a monomeric copper(I) species with linear two-coordinate geometry around the CuI atom. The asymmetric unit contains two half-cations that sit on crystallographic twofold rotation axes. The selected crystal was non-merohedrally twinned by a twofold rotation about an axis normal to the (100) family of planes. The ratio of the twin components refined to 0.4123 (6). Two 2-hydroxy-N-[2-(2-pyridyl)ethyl]benzamide ligands coordinate to each CuI atom via the pyridyl N atom. Intramolecular hydrogen bonding between the phenol OH groups and the amide O atoms imparts rigidity and planarity to the non-coordinating end of the ligand. The cationic complex is linked to the BF4
− anions via hydrogen bonding between the amide NH groups in the cations and BF4
− anions.
doi:10.1107/S1600536810001364
PMCID: PMC2979673
PMID: 21579646
In the planar (r.m.s. deviation = 0.027 Å) title compound, [Hg(C7H5O2)Cl], the HgII atom shows a typical linear coordination by a C atom of the benzene ring and a Cl atom. Intermolecular O—H⋯O hydrogen bonds are present in the crystal structure, resulting in chains propagating along the b axis. The crystal studied was a non-merohedral twin, with a twin ratio of 0.802 (2):0.198 (2).
doi:10.1107/S1600536809043529
PMCID: PMC2971446
PMID: 21578177
In the title monomeric rare earth complex, [LiNd(C19H40N3Si2)2Cl2(C4H8O)2], the [(Me3Si)2NC(NCy)2]2Nd+ (Me is methyl, Cy is cyclohexyl) and Li(THF)2
+ units (THF is tetrahydrofuran) are connected by two bridging Cl atoms. The Nd3+ ion is coordinated by two guanidinate ligands and two Cl atoms, forming a distorted chelating octahedral geometry. The Li+ ion is four-coordinated by two Cl atoms and two O atoms from THF molecules in a distorted tetrahedral geometry.
doi:10.1107/S160053681300158X
PMCID: PMC3569210
PMID: 23424412
The title compound, [SnCl2(C5H4NS)2], is the product of reaction of 2,2′-dipyridyl disulfide with tin tetrachloride. The SnIV atom adopts a distorted octahedral geometry, with the two bidentate pyridine-2-thiolate ligands forming two planar four-membered chelate rings. The two Sn—Cl, two Sn—N and two Sn—S bonds are in cis, cis and trans configurations, respectively. The crystal grown from acetonitrile represents a new monoclinic polymorph in space group C2/c with the molecule having twofold rotational symmetry, the SnIV atom lying on the twofold axis. The molecular structure of the monoclinic polymorph is very close to that of the triclinic polymorph studied previously in space group P-1, the molecule occupying a general position [Masaki & Matsunami (1976 ▶). Bull. Chem. Soc. Jpn, 49, 3274–3279; Masaki et al. (1978 ▶). Bull. Chem. Soc. Jpn, 51, 3298–3301]. Apparently, the formation of the two polymorphs is determined by the different systems of intermolecular interactions. In the crystal of the monoclinic polymorph, molecules are bound into ribbons along the c axis by C—H⋯Cl hydrogen bonds, whereas in the crystal of the triclinic polymorph, molecules form chains along the a axis by attractive S⋯S interactions. The crystal studied was a pseudo-merohedral twin; the refined BASF value is 0.221 (1).
doi:10.1107/S1600536812024026
PMCID: PMC3393155
PMID: 22807723
The title compound, [Au2Cl2(C26H26N2P2)], is formed from a bidentate phosphine ligand complexed to two linearly coordinated gold(I) atoms. The gold(I) atoms are 3.4873 (7) Å apart. The molecule exhibits a crystallographic twofold rotation axis.
doi:10.1107/S1600536810050506
PMCID: PMC3050310
PMID: 21522563
The title complex, [AuCl{(C6H5)2P(OH)-κP}] or [AuCl(C12H11OP)], contains two independent molecules in the asymmetric unit and is a polymorph of a previously reported structure [Hollatz et al. (1999 ▶) J. Chem. Soc. Dalton Trans. pp. 111–114]. The crystal structure exhibits intermolecular Au⋯Au interactions with alternate distances of 3.0112 (3) Å and 3.0375 (2) Å. The Cl—Au—P bond angle varies between different molecular units, depending on the degree of influence of the intramolecular the O—H⋯Cl hydrogen bond; the angle thus varies between negligible distortion from linearity at 179.23 (3)° and more significant distortion at 170.39 (4)°, which differs from the previously reported polymorph in which both these angles are approximately 170°. The Au—Cl [2.3366 (9) and 2.3131 (10)Å] and Au—P [2.2304 (10) and 2.2254 (10) Å] bond lengths vary slightly between the two independent molecules but overall, the bond lengths are in good agreement with those in the previously reported polymorph.
doi:10.1107/S1600536811035732
PMCID: PMC3201275
PMID: 22058683
The title compound, C19H26N2O3, crystallizes with two independent molecules in the asymmetric unit which differ in the twist of the phenyl rings with respect to the plane of the amide group [the C—C—C—O torsion angles are 121.5 (3) and −119.6 (3)° in the two molecules. Both cyclohexane rings adopt chair conformations. In the crystal, weak C—H⋯O interactions occur. The crystal studied was a non-merohedral twin with a minor component of 4.8 (1)%.
doi:10.1107/S1600536812035660
PMCID: PMC3435797
PMID: 22969643
The title compound, [Au2Cl2(C28H30N2P2)]·2C4H8O, was synthesized from a bidentate phosphine ligand complexed to two linear gold(I) chloride moieties. The Au(I) atom is in an almost linear coordination with a P—Au—Cl angle of 179.22 (4)°. The complex molecules reside on a twofold rotation axis.
doi:10.1107/S1600536811000109
PMCID: PMC3051471
PMID: 21522837
In the title gold complex, [AuCl(C18H12F3P)], the P—Au—Cl unit is nearly linear, with an angle of 178.13 (5)°. The three phosphine-substituted benzene rings make dihedral angles of 77.7 (3), 84.4 (3) and 77.4 (3)° with each other. Two of the three F atoms are disordered over two positions, with refined site occupancies of 0.591 (11):0.409 (11) and 0.730 (12):0.270 (12). In the crystal structure, molecules are linked into a three-dimensional network by intermolecular C—H⋯Cl and C—H⋯F hydrogen bonds.
doi:10.1107/S1600536810034896
PMCID: PMC2983311
PMID: 21587375
In the title structure, [CoRu(C5H5)(C17H26P)2Cl]PF6, the RuII atom is bonded to a cyclopentadienyl ring, a Cl atom and two P atoms of the chelating 1,1′-bis(dicyclohexylphosphino)cobaltocenium (di-cypc) ligand, leading to a three-legged piano-stool coordination. Part of the PF6
− counter-anion is disordered over two positions, with a site-occupancy ratio of 0.898 (7):0.102 (7). The components are linked by C—H⋯F and C—H⋯Cl hydrogen bonds.
doi:10.1107/S1600536810001790
PMCID: PMC2979948
PMID: 21579679
The title compound, [(2S,5R,6S,9R)-6-isopropyl-9-methyl-1,4-dioxaspiro[4.5]dec-2-yl]methyl 3,5-dinitrobenzoate, C20H26N2O8, was synthesized as part of a study of three-carbon stereochemical systems. The crystallographic assignment of the absolute stereochemistry is consistent with having started with (−)-menthone, the acetal carbon is R and the secondary alcohol is S. This brings the dinitrobenzoate into approximately the same plane as the menthyl ring and anti to the isopropyl group. Close intermolecular C=O⋯NO2 contacts between neighboring molecules [2.8341 (16) Å] contribute to the packing arrangement. The structure was refined as a pseudo-merohedral twin (monoclinic space group P21 emulating the orthorhombic space group C2221). Application of the twin law 100, 00, 0 gave a 2:1 ratio of twin moieties [refined BASF value = 0.3790 (7)].
doi:10.1107/S1600536809020960
PMCID: PMC2969335
PMID: 21582828
The title compound, [Cu2Cl4(C14H14N2)2], is a new polymorph of a previously reported compound [Dehghanpour et al. (2011 ▶). Acta Cryst. E67, m1296]. The current polymorph was obtained from an acetonitrile solution of the title compound. Like the first polymorph, it is monoclinic (space group P21/c). The unique CuII ion in the title centrosymmetric dinuclear complex is in a distorted trigonal–bipyramidal coordination environment formed by the bis-chelating N-heterocyclic ligand, two bridging Cl ligands and one terminal Cl ligand. In the crystal, weak C—H⋯Cl hydrogen bonds are observed in addition to π–π stacking interactions, with a centroid–centroid distance of 3.6597 (18) Å.
doi:10.1107/S1600536812026347
PMCID: PMC3393187
PMID: 22807755
The title compound, [PtCl(C42H78OP4)]Cl·0.5CH2Cl2·4H2O, crystallizes as a contact ion-pair with two close intermolecular C—H⋯Cl− contacts between CH acidic αH atoms of the phosphane ligand and the chloride anion. A chloride ligand together with three coordinating P ligand atoms create a slightly distorted square-planar coordination environment around the PtII center. An intermolecular water O—H⋯Cl− and water O—H⋯OP hydrogen-bond network completes the coordination around the anion. In addition, a disordered CH2Cl2 solvent molecule cocrystallized within a hydrophobic cavity spanned by the dicyclohexylphosphane ligands.
doi:10.1107/S1600536808041615
PMCID: PMC2967900
PMID: 21581527
The title compound, C26H28O4, lies about a crystallographic twofold rotation axis. The cyclohexane rings adopt a chair conformation. The two benzene rings form a dihedral angle of 40.82 (3)°. No significant intra- or intermolecular interactions are observed in the crystal structure.
doi:10.1107/S1600536812018478
PMCID: PMC3379232
PMID: 22719430
A review of published tetartohedrally twinned macromolecular structures is presented, together with details of the recent structure determination of triclinic tetartohedrally twinned crystals of human complement factor I.
Tetartohedral crystal twinning is discussed as a particular case of (pseudo)merohedral twinning when the number of twinned domains is four. Tetartohedrally twinned crystals often possess pseudosymmetry, with the rotational part of the pseudosymmetry operators coinciding with the twinning operators. Tetartohedrally twinned structures from the literature are reviewed and the recent structure determination of tetartohedrally twinned triclinic crystals of human complement factor I is discussed.
doi:10.1107/S0907444912006737
PMCID: PMC3322600
PMID: 22505261
tetartohedral twinning
In the title compound, (C5H7N2)2[CoCl4], the cobalt(II) ion is coordinated by four chloride ions in a slightly distorted tetrahedral geometry. The crystal packing is stabilized by intermolecular N—H⋯Cl hydrogen bonding, forming a three-dimensional network. The crystal was a non-merohedral twin emulating tetragonal symmetry, but being in fact orthorhombic.
doi:10.1107/S1600536809013270
PMCID: PMC2977578
PMID: 21583764
In the title compound, [CuCl(C14H19N2O2)], the CuII ion is four-coordinated by one deprotonated N,N′,O-tridentate Schiff base and one chloride ion in a distorted square-planar geometry. In the crystal, adjacent molecules are linked via C—H⋯Cl and C—H⋯O interactions, forming infinite layers parallel to the (100) plane. The structure was determined from a non-merohedrally twined crystal [twin ratio 0.777 (3):0.223 (3)].
doi:10.1107/S1600536810051160
PMCID: PMC3050288
PMID: 21522575