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Volume 2012;  2012
Articles
Dependency Parser-based Negation Detection in Clinical Narratives
Sunghwan Sohn, Stephen Wu, Christopher G. Chute
AMIA Summits Transl Sci Proc. 2012; 2012: 1–8. Published online 2012 March 19.
PMCID:
PMC3392064
Abstract Full Text PDF–164K
From Sequencer to Supercomputer: An Automatic Pipeline for Managing and Processing Next Generation Sequencing Data
Terry Camerlengo, Hatice Gulcin Ozer, Raghuram Onti-Srinivasan, Pearlly Yan, Tim Huang, Jeffrey Parvin, Kun Huang
AMIA Summits Transl Sci Proc. 2012; 2012: 1–10. Published online 2012 March 19.
PMCID:
PMC3392054
Abstract Full Text PDF–1.6M
Cohort Identification for Clinical Research: Querying Federated Electronic Healthcare Records Using Controlled Vocabularies and Semantic Types
Sarah N. Lim Choi Keung, Lei Zhao, Edward Tyler, Adel Taweel, Brendan Delaney, Kevin A. Peterson, Stuart M. Speedie, F.D. Richard Hobbs, Theodoros N. Arvanitis
AMIA Summits Transl Sci Proc. 2012; 2012: 9. Published online 2012 March 19.
PMCID:
PMC3392063
Abstract Full Text PDF–54K
Using Semantic Web Technologies for Cohort Identification from Electronic Health Records for Clinical Research
Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
AMIA Summits Transl Sci Proc. 2012; 2012: 10–19. Published online 2012 March 19.
PMCID:
PMC3392057
Abstract Full Text PDF–346K
Quantifying multi-ethnic representation in genetic studies of high mortality diseases
Rong Chen, Joel T. Dudley, David Ruau, Atul J. Butte
AMIA Summits Transl Sci Proc. 2012; 2012: 11–18. Published online 2012 March 19.
PMCID:
PMC3392055
Abstract Full Text PDF–416K
A Simulation Platform to Examine Heterogeneity Influence on Treatment
Chih-Lin Chi, Vincent A. Fusaro, Prasad Patil, Matthew A. Crawford, Charles F. Content, Peter J. Tonellato
AMIA Summits Transl Sci Proc. 2012; 2012: 19–24. Published online 2012 March 19.
PMCID:
PMC3392060
Abstract Full Text PDF–130K
Semantator: Annotating Clinical Narratives with Semantic Web Ontologies
Dezhao Song, Christopher G. Chute, Cui Tao
AMIA Summits Transl Sci Proc. 2012; 2012: 20–29. Published online 2012 March 19.
PMCID:
PMC3392053
Abstract Full Text PDF–812K
A Bayesian Translational Framework for Knowledge Propagation, Discovery, and Integration Under Specific Contexts
Michelle Deng, Amin Zollanvari, Gil Alterovitz
AMIA Summits Transl Sci Proc. 2012; 2012: 25–34. Published online 2012 March 19.
PMCID:
PMC3392061
Abstract Full Text PDF–1.0M
Using SNOMED-CT to encode summary level data – a corpus analysis
Hongfang Liu, Kavishwar Wagholikar, Stephen Tze-Inn Wu
AMIA Summits Transl Sci Proc. 2012; 2012: 30–37. Published online 2012 March 19.
PMCID:
PMC3392059
Abstract Full Text PDF–480K
Coanalysis of GWAS with eQTLs reveals disease-tissue associations
Hyunseok Peter Kang, Alex A. Morgan, Rong Chen, Eric E. Schadt, Atul J. Butte
AMIA Summits Transl Sci Proc. 2012; 2012: 35–41. Published online 2012 March 19.
PMCID:
PMC3392070
Abstract Full Text PDF–280K
Feasibility of pooling annotated corpora for clinical concept extraction
Kavishwar Wagholikar, Manabu Torii, Siddhartha Jonnalagadda, Hongfang Liu
AMIA Summits Transl Sci Proc. 2012; 2012: 38. Published online 2012 March 19.
PMCID:
PMC3392069
Abstract Full Text PDF–46K
I-spline Smoothing for Calibrating Predictive Models
Yuan Wu, Xiaoqian Jiang, Jihoon Kim, Lucila Ohno-Machado
AMIA Summits Transl Sci Proc. 2012; 2012: 39–46. Published online 2012 March 19.
PMCID:
PMC3392066
Abstract Full Text PDF–1.3M
Formal Concept Analysis of Disease Similarity
Benjamin J. Keller, Felix Eichinger, Matthias Kretzler
AMIA Summits Transl Sci Proc. 2012; 2012: 42–51. Published online 2012 March 19.
PMCID:
PMC3392047
Abstract Full Text PDF–326K
Using Temporal Patterns in Medical Records to Discern Adverse Drug Events from Indications
Yi Liu, Paea LePendu, Srinivasan Iyer, Nigam H. Shah
AMIA Summits Transl Sci Proc. 2012; 2012: 47–56. Published online 2012 March 19.
PMCID:
PMC3392062
Abstract Full Text PDF–1.0M
A Partitioning Based Adaptive Method for Robust Removal of Irrelevant Features from High-dimensional Biomedical Datasets
Guodong Liu1, Lan Kong, Vanathi Gopalakrishnan
AMIA Summits Transl Sci Proc. 2012; 2012: 52–61. Published online 2012 March 19.
PMCID:
PMC3392052
Abstract Full Text PDF–612K
LC Data QUEST: A Technical Architecture for Community Federated Clinical Data Sharing
Kari A. Stephens, Ching-Ping Lin, Laura-Mae Baldwin, Abigail Echo-Hawk, Gina A. Keppel, Dedra Buchwald, Ron J. Whitener, Diane M. Korngiebel, Alfred O. Berg, Robert A. Black, Peter Tarczy-Hornoch
AMIA Summits Transl Sci Proc. 2012; 2012: 57–62. Published online 2012 March 19.
PMCID:
PMC3392065
Abstract Full Text PDF–404K
Integrative Analysis of Common Neurodegenerative Diseases Using Gene Association, Interaction Networks and mRNA Expression Data
Yu Liu, Mehmet Koyutürk, Sean Maxwell, Zhongming Zhao, Mark R Chance
AMIA Summits Transl Sci Proc. 2012; 2012: 62–71. Published online 2012 March 19.
PMCID:
PMC3392058
Abstract Full Text PDF–763K
Analyzing Patterns of Drug Use in Clinical Notes for Patient Safety
Paea LePendu, Yi Liu, Srinivasan Iyer, Madeleine R. Udell, Nigam H. Shah
AMIA Summits Transl Sci Proc. 2012; 2012: 63–70. Published online 2012 March 19.
PMCID:
PMC3392046
Abstract Full Text PDF–1.6M
EliXR-TIME: A Temporal Knowledge Representation for Clinical Research Eligibility Criteria
Mary Regina Boland, Samson W. Tu, Simona Carini, Ida Sim, Chunhua Weng
AMIA Summits Transl Sci Proc. 2012; 2012: 71–80. Published online 2012 March 19.
PMCID:
PMC3392056
Abstract Full Text PDF–1.0M
Integrating Genome and Functional Genomics Data to Reveal Perturbed Signaling Pathways in Ovarian Cancers
Songjian Lu, Xinghua Lu
AMIA Summits Transl Sci Proc. 2012; 2012: 72–78. Published online 2012 March 19.
PMCID:
PMC3392049
Abstract Full Text PDF–594K
Context-Specific Ontology Integration: A Bayesian Approach
Kshitij Marwah, Dustin Katzin, Amin Zollanvari, Natalya F. Noy, Marco Ramoni, Gil Alterovitz
AMIA Summits Transl Sci Proc. 2012; 2012: 79–86. Published online 2012 March 19.
PMCID:
PMC3392068
Abstract Full Text PDF–689K
A Selective Voting Convex-Hull Ensemble Procedure for Personalized Medicine
Radhakrishnan Nagarajan, Ralph L. Kodell
AMIA Summits Transl Sci Proc. 2012; 2012: 87–94. Published online 2012 March 19.
PMCID:
PMC3392048
Abstract Full Text PDF–266K
An Automated Bayesian Framework for Integrative Gene Expression Analysis and Predictive Medicine
Neena Parikh, Amin Zollanvari, Gil Alterovitz
AMIA Summits Transl Sci Proc. 2012; 2012: 95–104. Published online 2012 March 19.
PMCID:
PMC3392067
Abstract Full Text PDF–942K
Towards to an Oncology Database (ONCOD) using a data warehousing approach
Xiaoming Wang, Lili Liu, James Fackenthal, Paul Chang, Gilliam Newstead, Steven Chmura, Ian Foster, Olufunmilayo I Olopade
AMIA Summits Transl Sci Proc. 2012; 2012: 105. Published online 2012 March 19.
PMCID:
PMC3392051
Abstract Full Text PDF–1.3M
Identifying Common Genes and Networks in Multi-Organ Fibrosis
Kevin E. Wenzke, Carmen Cantemir-Stone, Jie Zhang, Clay B. Marsh, Kun Huang
AMIA Summits Transl Sci Proc. 2012; 2012: 106–115. Published online 2012 March 19.
PMCID:
PMC3392050
Abstract Full Text PDF–451K
Articles from AMIA Summits on Translational Science Proceedings are provided here courtesy of
American Medical Informatics Association