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Volume 4;  2006
Methodology Articles
Modulation of Aβ42 low-n oligomerization using a novel yeast reporter system
Sviatoslav Bagriantsev, Susan Liebman
BMC Biol. 2006; 4: 32. Published online 2006 September 26. doi: 10.1186/1741-7007-4-32
PMCID:
PMC1594584
Abstract Full Text PDF–1.4M
Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST
E Michael Gertz, Yi-Kuo Yu, Richa Agarwala, Alejandro A Schäffer, Stephen F Altschul
BMC Biol. 2006; 4: 41. Published online 2006 December 7. doi: 10.1186/1741-7007-4-41
PMCID:
PMC1779365
Abstract Full Text PDF–684K Supplementary Material
Research Articles
Long-term starvation and ageing induce AGE-1/PI 3-kinase-dependent translocation of DAF-16/FOXO to the cytoplasm
David Weinkove, Jonathan R Halstead, David Gems, Nullin Divecha
BMC Biol. 2006; 4: 1. Published online 2006 February 3. doi: 10.1186/1741-7007-4-1
PMCID:
PMC1403811
Abstract Full Text PDF–3.7M Supplementary Material
Human hair genealogies and stem cell latency
Jung Yeon Kim, Simon Tavaré, Darryl Shibata
BMC Biol. 2006; 4: 2. Published online 2006 February 3. doi: 10.1186/1741-7007-4-2
PMCID:
PMC1386708
Abstract Full Text PDF–336K
The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes
Jean-François Pombert, Claude Lemieux, Monique Turmel
BMC Biol. 2006; 4: 3. Published online 2006 February 3. doi: 10.1186/1741-7007-4-3
PMCID:
PMC1402334
Abstract Full Text PDF–1.9M
CBFβ is a facultative Runx partner in the sea urchin embryo
Anthony J Robertson, Carrie Dickey-Sims, Andrew Ransick, Dawn E Rupp, John J McCarthy, James A Coffman
BMC Biol. 2006; 4: 4. Published online 2006 February 9. doi: 10.1186/1741-7007-4-4
PMCID:
PMC1395345
Abstract Full Text PDF–1.0M
Complete probabilistic analysis of RNA shapes
Björn Voß, Robert Giegerich, Marc Rehmsmeier
BMC Biol. 2006; 4: 5. Published online 2006 February 15. doi: 10.1186/1741-7007-4-5
PMCID:
PMC1479382
Abstract Full Text PDF–793K
Streambed microstructure predicts evolution of development and life history mode in the plethodontid salamander Eurycea tynerensis
Ronald M Bonett, Paul T Chippindale
BMC Biol. 2006; 4: 6. Published online 2006 March 2. doi: 10.1186/1741-7007-4-6
PMCID:
PMC1413558
Abstract Full Text PDF–1.0M Supplementary Material
Mouse taste cells with G protein-coupled taste receptors lack voltage-gated calcium channels and SNAP-25
Tod R Clapp, Kathryn F Medler, Sami Damak, Robert F Margolskee, Sue C Kinnamon
BMC Biol. 2006; 4: 7. Published online 2006 March 30. doi: 10.1186/1741-7007-4-7
PMCID:
PMC1444931
Abstract Full Text PDF–1.5M
Nucleus accumbens corticotropin-releasing factor increases cue-triggered motivation for sucrose reward: paradoxical positive incentive effects in stress?
Susana Peciña, Jay Schulkin, Kent C Berridge
BMC Biol. 2006; 4: 8. Published online 2006 April 13. doi: 10.1186/1741-7007-4-8
PMCID:
PMC1459217
Abstract Full Text PDF–1.6M
Corto and DSP1 interact and bind to a maintenance element of the Scr Hox gene: understanding the role of Enhancers of trithorax and Polycomb
Juliette Salvaing, Martine Decoville, Emmanuèle Mouchel-Vielh, Marianne Bussière, Anne Daulny, Lidiya Boldyreva, Igor Zhimulev, Daniel Locker, Frédérique Peronnet
BMC Biol. 2006; 4: 9. Published online 2006 April 14. doi: 10.1186/1741-7007-4-9
PMCID:
PMC1459216
Abstract Full Text PDF–3.6M
Carotenoid dynamics in Atlantic salmon
Hannah Rajasingh, Leiv Øyehaug, Dag Inge Våge, Stig W Omholt
BMC Biol. 2006; 4: 10. Published online 2006 April 18. doi: 10.1186/1741-7007-4-10
PMCID:
PMC1479383
Abstract Full Text PDF–408K
Polyphyly and gene flow between non-sibling Heliconius species
Vanessa Bull, Margarita Beltrán, Chris D Jiggins, W Owen McMillan, Eldredge Bermingham, James Mallet
BMC Biol. 2006; 4: 11. Published online 2006 April 21. doi: 10.1186/1741-7007-4-11
PMCID:
PMC1481601
Abstract Full Text PDF–1.1M Supplementary Material
The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured
Audrey P de Koning, Patrick J Keeling
BMC Biol. 2006; 4: 12. Published online 2006 April 21. doi: 10.1186/1741-7007-4-12
PMCID:
PMC1463013
Abstract Full Text PDF–416K
A modular interface of IL-4 allows for scalable affinity without affecting specificity for the IL-4 receptor
Michael Kraich, Markus Klein, Edwin Patiño, Henning Harrer, Joachim Nickel, Walter Sebald, Thomas D Mueller
BMC Biol. 2006; 4: 13. Published online 2006 April 26. doi: 10.1186/1741-7007-4-13
PMCID:
PMC1479839
Abstract Full Text PDF–4.3M
Compensation by tumor suppressor genes during retinal development in mice and humans
Stacy L Donovan, Brett Schweers, Rodrigo Martins, Dianna Johnson, Michael A Dyer
BMC Biol. 2006; 4: 14. Published online 2006 May 3. doi: 10.1186/1741-7007-4-14
PMCID:
PMC1481602
Abstract Full Text PDF–5.3M Supplementary Material
Gene expression in cortex and hippocampus during acute pneumococcal meningitis
Roney S Coimbra, Veronique Voisin, Antoine B de Saizieu, Raija LP Lindberg, Matthias Wittwer, David Leppert, Stephen L Leib
BMC Biol. 2006; 4: 15. Published online 2006 June 2. doi: 10.1186/1741-7007-4-15
PMCID:
PMC1523193
Abstract Full Text PDF–1.4M Supplementary Material
Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates
Dirk Steinke, Simone Hoegg, Henner Brinkmann, Axel Meyer
BMC Biol. 2006; 4: 16. Published online 2006 June 6. doi: 10.1186/1741-7007-4-16
PMCID:
PMC1508162
Abstract Full Text PDF–673K Supplementary Material
Neuromuscular organization and aminergic modulation of contractions in the Drosophila ovary
C Adam Middleton, Upendra Nongthomba, Katherine Parry, Sean T Sweeney, John C Sparrow, Christopher JH Elliott
BMC Biol. 2006; 4: 17. Published online 2006 June 12. doi: 10.1186/1741-7007-4-17
PMCID:
PMC1526757
Abstract Full Text PDF–2.0M Supplementary Material
Classification of human breathing sounds by the common vampire bat, Desmodus rotundus
Udo Gröger, Lutz Wiegrebe
BMC Biol. 2006; 4: 18. Published online 2006 June 16. doi: 10.1186/1741-7007-4-18
PMCID:
PMC1513255
Abstract Full Text PDF–759K Supplementary Material
Characterization of the minimum domain required for targeting budding yeast myosin II to the site of cell division
Ida MB Lister, Nicola J Tolliday, Rong Li
BMC Biol. 2006; 4: 19. Published online 2006 June 26. doi: 10.1186/1741-7007-4-19
PMCID:
PMC1559645
Abstract Full Text PDF–382K
Genetic context determines susceptibility to intraocular pressure elevation in a mouse pigmentary glaucoma
Michael G Anderson, Richard T Libby, Mao Mao, Ioan M Cosma, Larry A Wilson, Richard S Smith, Simon WM John
BMC Biol. 2006; 4: 20. Published online 2006 July 7. doi: 10.1186/1741-7007-4-20
PMCID:
PMC1543659
Abstract Full Text PDF–1.4M
Cooperation and virulence in acute Pseudomonas aeruginosa infections
Freya Harrison, Lucy E Browning, Michiel Vos, Angus Buckling
BMC Biol. 2006; 4: 21. Published online 2006 July 7. doi: 10.1186/1741-7007-4-21
PMCID:
PMC1526758
Abstract Full Text PDF–343K
Expression of mammalian GPCRs in C. elegans generates novel behavioural responses to human ligands
Michelle S Teng, Martijn PJ Dekkers, Bee Ling Ng, Suzanne Rademakers, Gert Jansen, Andrew G Fraser, John McCafferty
BMC Biol. 2006; 4: 22. Published online 2006 July 20. doi: 10.1186/1741-7007-4-22
PMCID:
PMC1550261
Abstract Full Text PDF–544K Supplementary Material
Early cortical facilitation for emotionally arousing targets during the attentional blink
Andreas Keil, Niklas Ihssen, Sabine Heim
BMC Biol. 2006; 4: 23. Published online 2006 July 20. doi: 10.1186/1741-7007-4-23
PMCID:
PMC1559646
Abstract Full Text PDF–1.7M
Comparative genomics of the class 4 histone deacetylase family indicates a complex evolutionary history
Valérie Ledent, Michel Vervoort
BMC Biol. 2006; 4: 24. Published online 2006 August 2. doi: 10.1186/1741-7007-4-24
PMCID:
PMC1555614
Abstract Full Text PDF–371K Supplementary Material
The neurochemical basis of human cortical auditory processing: combining proton magnetic resonance spectroscopy and magnetoencephalography
Peter Sörös, Nikolaus Michael, Melanie Tollkötter, Bettina Pfleiderer
BMC Biol. 2006; 4: 25. Published online 2006 August 3. doi: 10.1186/1741-7007-4-25
PMCID:
PMC1553472
Abstract Full Text PDF–788K
Initiation of male sperm-transfer behavior in Caenorhabditis elegans requires input from the ventral nerve cord
Gary Schindelman, Allyson J Whittaker, Jian Yuan Thum, Shahla Gharib, Paul W Sternberg
BMC Biol. 2006; 4: 26. Published online 2006 August 15. doi: 10.1186/1741-7007-4-26
PMCID:
PMC1564418
Abstract Full Text PDF–4.3M Supplementary Material
The roles of calcium signaling and ERK1/2 phosphorylation in a Pax6+/- mouse model of epithelial wound-healing delay
Lucy J Leiper, Petr Walczysko, Romana Kucerova, Jingxing Ou, Lynne J Shanley, Diane Lawson, John V Forrester, Colin D McCaig, Min Zhao, J Martin Collinson
BMC Biol. 2006; 4: 27. Published online 2006 August 16. doi: 10.1186/1741-7007-4-27
PMCID:
PMC1563477
Abstract Full Text PDF–2.5M Supplementary Material
A molecular scheme for improved characterization of human embryonic stem cell lines
Richard Josephson, Gregory Sykes, Ying Liu, Carol Ording, Weining Xu, Xianmin Zeng, Soojung Shin, Jeanne Loring, Anirban Maitra, Mahendra S Rao, Jonathan M Auerbach
BMC Biol. 2006; 4: 28. Published online 2006 August 18. doi: 10.1186/1741-7007-4-28
PMCID:
PMC1601965
Abstract Full Text PDF–1.5M
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic
Daniel H Haft, Ian T Paulsen, Naomi Ward, Jeremy D Selengut
BMC Biol. 2006; 4: 29. Published online 2006 August 24. doi: 10.1186/1741-7007-4-29
PMCID:
PMC1569441
Abstract Full Text PDF–414K
RNA:protein ratio of the unicellular organism as a characteristic of phosphorous and nitrogen stoichiometry and of the cellular requirement of ribosomes for protein synthesis
Tatiana V Karpinets, Duncan J Greenwood, Carl E Sams, John T Ammons
BMC Biol. 2006; 4: 30. Published online 2006 September 5. doi: 10.1186/1741-7007-4-30
PMCID:
PMC1574349
Abstract Full Text PDF–306K
A major genetic component of BSE susceptibility
Katrin Juling, Hermann Schwarzenbacher, John L Williams, Ruedi Fries
BMC Biol. 2006; 4: 33. Published online 2006 October 2. doi: 10.1186/1741-7007-4-33
PMCID:
PMC1601964
Abstract Full Text PDF–1000K Supplementary Material
African-American mitochondrial DNAs often match mtDNAs found in multiple African ethnic groups
Bert Ely, Jamie Lee Wilson, Fatimah Jackson, Bruce A Jackson
BMC Biol. 2006; 4: 34. Published online 2006 October 12. doi: 10.1186/1741-7007-4-34
Correction in:
BMC Biol. 2007; 5: 13.
PMCID:
PMC1618861
Abstract Full Text PDF–306K Correction
The eggshell is required for meiotic fidelity, polar-body extrusion and polarization of the C. elegans embryo
Wendy L Johnston, Aldis Krizus, James W Dennis
BMC Biol. 2006; 4: 35. Published online 2006 October 16. doi: 10.1186/1741-7007-4-35
PMCID:
PMC1635065
Abstract Full Text PDF–6.6M
An extended window of opportunity for G-CSF treatment in cerebral ischemia
Armin Schneider, Rainer Wysocki, Claudia Pitzer, Carola Krüger, Rico Laage, Stefan Schwab, Alfred Bach, Wolf-Rüdiger Schäbitz
BMC Biol. 2006; 4: 36. Published online 2006 October 18. doi: 10.1186/1741-7007-4-36
PMCID:
PMC1633735
Abstract Full Text PDF–277K
Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences
Nadia D Singh, Peter F Arndt, Dmitri A Petrov
BMC Biol. 2006; 4: 37. Published online 2006 October 18. doi: 10.1186/1741-7007-4-37
PMCID:
PMC1626080
Abstract Full Text PDF–386K
Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes
Timothy JD Goodwin, Margaret I Butler, Russell TM Poulter
BMC Biol. 2006; 4: 38. Published online 2006 October 27. doi: 10.1186/1741-7007-4-38
PMCID:
PMC1635734
Abstract Full Text PDF–692K Supplementary Material
The effects of incomplete protein interaction data on structural and evolutionary inferences
Eric de Silva, Thomas Thorne, Piers Ingram, Ino Agrafioti, Jonathan Swire, Carsten Wiuf, Michael PH Stumpf
BMC Biol. 2006; 4: 39. Published online 2006 November 3. doi: 10.1186/1741-7007-4-39
PMCID:
PMC1665463
Abstract Full Text PDF–878K Supplementary Material
A rapidly evolving secretome builds and patterns a sea shell
Daniel J Jackson, Carmel McDougall, Kathryn Green, Fiona Simpson, Gert Wörheide, Bernard M Degnan
BMC Biol. 2006; 4: 40. Published online 2006 November 22. doi: 10.1186/1741-7007-4-40
PMCID:
PMC1676022
Abstract Full Text PDF–1.6M Supplementary Material
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