BMC Bioinformatics Volume 13(Suppl 10); 2012

|archive

Volume 13(Suppl 10); 2012

Proceedings

Guest Editors' Introduction

Jianer Chen, Ion Măndoiu, Raj Sunderraman, Jianxin Wang, Alexander Zelikovsky

BMC Bioinformatics. 2012; 13(Suppl 10): S1. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S1

PMCID:: PMC3382435

Full Text PDF–164K

Computing the protein binding sites

Fei Guo, Lusheng Wang

BMC Bioinformatics. 2012; 13(Suppl 10): S2. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S2

PMCID:: PMC3382440

Abstract Full Text PDF–712K

Prediction of DNA-binding propensity of proteins by the ball-histogram method using automatic template search

Andrea Szabóová, Ondřej Kuželka, Filip Železný, Jakub Tolar

BMC Bioinformatics. 2012; 13(Suppl 10): S3. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S3

PMCID:: PMC3382442

Abstract Full Text PDF–806K

High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs

Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu

BMC Bioinformatics. 2012; 13(Suppl 10): S4. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S4

PMCID:: PMC3382438

Abstract Full Text PDF–1.1M

The maximum clique enumeration problem: algorithms, applications, and implementations

John D Eblen, Charles A Phillips, Gary L Rogers, Michael A Langston

BMC Bioinformatics. 2012; 13(Suppl 10): S5. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S5

PMCID:: PMC3382443

Abstract Full Text PDF–664K

Efficient error correction for next-generation sequencing of viral amplicons

Pavel Skums, Zoya Dimitrova, David S Campo, Gilberto Vaughan, Livia Rossi, Joseph C Forbi, Jonny Yokosawa, Alex Zelikovsky, Yury Khudyakov

BMC Bioinformatics. 2012; 13(Suppl 10): S6. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S6

PMCID:: PMC3382444

Abstract Full Text PDF–982K

A systematic comparison of genome-scale clustering algorithms

Jeremy J Jay, John D Eblen, Yun Zhang, Mikael Benson, Andy D Perkins, Arnold M Saxton, Brynn H Voy, Elissa J Chesler, Michael A Langston

BMC Bioinformatics. 2012; 13(Suppl 10): S7. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S7

PMCID:: PMC3382433

Abstract Full Text PDF–567K Supplementary Material

Genome plasticity and systems evolution in Streptomyces

Zhan Zhou, Jianying Gu, Yong-Quan Li, Yufeng Wang

BMC Bioinformatics. 2012; 13(Suppl 10): S8. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S8

PMCID:: PMC3388780

Abstract Full Text PDF–871K Supplementary Material

Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes

Chunfang Zheng, David Sankoff

BMC Bioinformatics. 2012; 13(Suppl 10): S9. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S9

PMCID:: PMC3389459

Abstract Full Text PDF–920K

Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation

Vadim Mozhayskiy, Ilias Tagkopoulos

BMC Bioinformatics. 2012; 13(Suppl 10): S10. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S10

PMCID:: PMC3382439

Abstract Full Text PDF–726K

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence

Ruchi Chaudhary, J Gordon Burleigh, Oliver Eulenstein

BMC Bioinformatics. 2012; 13(Suppl 10): S11. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S11

PMCID:: PMC3382437

Abstract Full Text PDF–445K

Consensus properties for the deep coalescence problem and their application for scalable tree search

Harris T Lin, J Gordon Burleigh, Oliver Eulenstein

BMC Bioinformatics. 2012; 13(Suppl 10): S12. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S12

PMCID:: PMC3382448

Abstract Full Text PDF–1.1M Supplementary Material

Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution

Vadim Mozhayskiy, Ilias Tagkopoulos

BMC Bioinformatics. 2012; 13(Suppl 10): S13. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S13

PMCID:: PMC3382434

Abstract Full Text PDF–1.4M Supplementary Material

Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem

Pawel Górecki, Oliver Eulenstein

BMC Bioinformatics. 2012; 13(Suppl 10): S14. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S14

PMCID:: PMC3382441

Abstract Full Text PDF–1.5M

Comparative evaluation of set-level techniques in predictive classification of gene expression samples

Matěj Holec, Jiří Kléma, Filip Železný, Jakub Tolar

BMC Bioinformatics. 2012; 13(Suppl 10): S15. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S15

PMCID:: PMC3382436

Abstract Full Text PDF–599K

Exploring biological interaction networks with tailored weighted quasi-bicliques

Wen-Chieh Chang, Sudheer Vakati, Roland Krause, Oliver Eulenstein

BMC Bioinformatics. 2012; 13(Suppl 10): S16. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S16

PMCID:: PMC3314588

Abstract Full Text PDF–333K

Gene network modular-based classification of microarray samples

Pingzhao Hu, Shelley B Bull, Hui Jiang

BMC Bioinformatics. 2012; 13(Suppl 10): S17. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S17

PMCID:: PMC3314572

Abstract Full Text PDF–273K

A methodology for detecting the orthology signal in a PPI network at a functional complex level

Pavol Jancura, Eleftheria Mavridou, Enrique Carrillo-de Santa Pau, Elena Marchiori

BMC Bioinformatics. 2012; 13(Suppl 10): S18. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S18

PMCID:: PMC3314571

Abstract Full Text PDF–304K

Efficient and accurate greedy search methods for mining functional modules in protein interaction networks

Jieyue He, Chaojun Li, Baoliu Ye, Wei Zhong

BMC Bioinformatics. 2012; 13(Suppl 10): S19. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S19

PMCID:: PMC3314584

Abstract Full Text PDF–554K

Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study

Jonathan Q Jiang, Maoying Wu

BMC Bioinformatics. 2012; 13(Suppl 10): S20. Published online 2012 June 25. doi: 10.1186/1471-2105-13-S10-S20

PMCID:: PMC3314587

Abstract Full Text PDF–907K Supplementary Material

Articles from BMC Bioinformatics are provided here courtesy of
BioMed Central

PMC Canada | Copyright | Disclaimer

PubMed Central Canada is a service of the Canadian Institutes of Health Research (CIHR) working in partnership with the National Research Council's Canada Institute for Scientific and Technical Information in cooperation with the National Center for Biotechnology Information at the U.S. National Library of Medicine(NCBI/NLM). It includes content provided to the PubMed Central International archive by participating publishers.