Appl Environ Microbiol Volume 71(3); March 2005

Volume 71(3); March 2005


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Genetics and Molecular Biology

Validation of a Flour-Free Model Dough System for Throughput Studies of Baker's Yeast

Joaquin Panadero, Francisca Randez-Gil, Jose Antonio Prieto

Appl Environ Microbiol. 2005 March; 71(3): 1142–1147. doi: 10.1128/AEM.71.3.1142-1147.2005

PMCID:: PMC1065147

Abstract Full Text PDF–329K

Characterization of the cro-ori Region of the Streptococcus thermophilus Virulent Bacteriophage DT1

Geneviève Lamothe, Céline Lévesque, Frédéric Bissonnette, Armelle Cochu, Christian Vadeboncoeur, Michel Frenette, Martin Duplessis, Denise Tremblay, Sylvain Moineau

Appl Environ Microbiol. 2005 March; 71(3): 1237–1246. doi: 10.1128/AEM.71.3.1237-1246.2005

PMCID:: PMC1065193

Abstract Full Text PDF–292K

Novel Activator of Mannose-Specific Phosphotransferase System Permease Expression in Listeria innocua, Identified by Screening for Pediocin AcH Resistance

Junfeng Xue, Ian Hunter, Tori Steinmetz, Adam Peters, Bibek Ray, Kurt W. Miller

Appl Environ Microbiol. 2005 March; 71(3): 1283–1290. doi: 10.1128/AEM.71.3.1283-1290.2005

PMCID:: PMC1065182

Abstract Full Text PDF–481K

Histamine-Producing Pathway Encoded on an Unstable Plasmid in Lactobacillus hilgardii 0006

Patrick M. Lucas, Wout A. M. Wolken, Olivier Claisse, Juke S. Lolkema, Aline Lonvaud-Funel

Appl Environ Microbiol. 2005 March; 71(3): 1417–1424. doi: 10.1128/AEM.71.3.1417-1424.2005

PMCID:: PMC1065165

Abstract Full Text PDF–207K

Characterization of the Highly Efficient Sucrose Isomerase from Pantoea dispersa UQ68J and Cloning of the Sucrose Isomerase Gene

Luguang Wu, Robert G. Birch

Appl Environ Microbiol. 2005 March; 71(3): 1581–1590. doi: 10.1128/AEM.71.3.1581-1590.2005

PMCID:: PMC1065169

Abstract Full Text PDF–670K

Enzymology and Protein Engineering

Posttranslational Modification of 6-Phosphofructo-1-Kinase in Aspergillus niger

Suzana Mesojednik, Matic Legiša

Appl Environ Microbiol. 2005 March; 71(3): 1425–1432. doi: 10.1128/AEM.71.3.1425-1432.2005

PMCID:: PMC1065176

Abstract Full Text PDF–283K

Molecular and Conformational Basis of a Specific and High-Affinity Interaction between AlbA and Albicidin Phytotoxin

Li-Xing Weng, Lian-Hui Wang, Jin-Ling Xu, Ji-En Wu, Qi Li, Lian-Hui Zhang

Appl Environ Microbiol. 2005 March; 71(3): 1445–1452. doi: 10.1128/AEM.71.3.1445-1452.2005

PMCID:: PMC1065129

Abstract Full Text PDF–211K

In Vitro Reconstitution of an NADPH-Dependent Superoxide Reduction Pathway from Pyrococcus furiosus

Amy M. Grunden, Francis E. Jenney, Jr., Kesen Ma, Mikyoung Ji, Michael V. Weinberg, Michael W. W. Adams

Appl Environ Microbiol. 2005 March; 71(3): 1522–1530. doi: 10.1128/AEM.71.3.1522-1530.2005

PMCID:: PMC1065123

Abstract Full Text PDF–521K

Subtle Difference between Benzene and Toluene Dioxygenases of Pseudomonas putida

Claire Bagnéris, Richard Cammack, Jeremy R. Mason

Appl Environ Microbiol. 2005 March; 71(3): 1570–1580. doi: 10.1128/AEM.71.3.1570-1580.2005

PMCID:: PMC1065172

Abstract Full Text PDF–341K

Heterologous Expression, Purification, and Characterization of a Highly Active Xylose Reductase from Neurospora crassa

Ryan Woodyer, Michael Simurdiak, Wilfred A. van der Donk, Huimin Zhao

Appl Environ Microbiol. 2005 March; 71(3): 1642–1647. doi: 10.1128/AEM.71.3.1642-1647.2005

PMCID:: PMC1065158

Abstract Full Text PDF–238K Supplementary Material

Physiology and Biotechnology

Effect of Heat, Acidification, and Chlorination on Salmonella enterica Serovar Typhimurium Cells in a Biofilm Formed at the Air-Liquid Interface

Keren Scher, Ute Romling, Sima Yaron

Appl Environ Microbiol. 2005 March; 71(3): 1163–1168. doi: 10.1128/AEM.71.3.1163-1168.2005

PMCID:: PMC1065136

Abstract Full Text PDF–156K

Heterologous Production, Assembly, and Secretion of a Minicellulosome by Clostridium acetobutylicum ATCC 824

Florence Mingardon, Stéphanie Perret, Anne Bélaïch, Chantal Tardif, Jean-Pierre Bélaïch, Henri-Pierre Fierobe

Appl Environ Microbiol. 2005 March; 71(3): 1215–1222. doi: 10.1128/AEM.71.3.1215-1222.2005

PMCID:: PMC1065181

Abstract Full Text PDF–208K

Functional Analysis of Three Plasmids from Lactobacillus plantarum

Richard van Kranenburg, Natasa Golic, Roger Bongers, Rob J. Leer, Willem M. de Vos, Roland J. Siezen, Michiel Kleerebezem

Appl Environ Microbiol. 2005 March; 71(3): 1223–1230. doi: 10.1128/AEM.71.3.1223-1230.2005

PMCID:: PMC1065126

Abstract Full Text PDF–200K

Influence of Starvation on Potential Ammonia-Oxidizing Activity and amoA mRNA Levels of Nitrosospira briensis

Annette Bollmann, Ingo Schmidt, Aaron M. Saunders, Mette H. Nicolaisen

Appl Environ Microbiol. 2005 March; 71(3): 1276–1282. doi: 10.1128/AEM.71.3.1276-1282.2005

PMCID:: PMC1065156

Abstract Full Text PDF–221K

The Doubly Phosphorylated Form of HPr, HPr(Ser-P)(His~P), Is Abundant in Exponentially Growing Cells of Streptococcus thermophilus and Phosphorylates the Lactose Transporter LacS as Efficiently as HPr(His~P)

Armelle Cochu, Denis Roy, Katy Vaillancourt, Jean-Dominique LeMay, Israël Casabon, Michel Frenette, Sylvain Moineau, Christian Vadeboncoeur

Appl Environ Microbiol. 2005 March; 71(3): 1364–1372. doi: 10.1128/AEM.71.3.1364-1372.2005

PMCID:: PMC1065139

Abstract Full Text PDF–488K

Environmental DNA Fragment Conferring Early and Increased Sporulation and Antibiotic Production in Streptomyces Species

Asuncion Martinez, Steven J. Kolvek, Joern Hopke, Choi Lai Tiong Yip, Marcia S. Osburne

Appl Environ Microbiol. 2005 March; 71(3): 1638–1641. doi: 10.1128/AEM.71.3.1638-1641.2005

PMCID:: PMC1065173

Abstract Full Text PDF–420K

Characterization of Hydrogenase and Reductive Dehalogenase Activities of Dehalococcoides ethenogenes Strain 195

Ivonne Nijenhuis, Stephen H. Zinder

Appl Environ Microbiol. 2005 March; 71(3): 1664–1667. doi: 10.1128/AEM.71.3.1664-1667.2005

PMCID:: PMC1065153

Abstract Full Text PDF–135K

Mycology

Degradation of 1,4-Dioxane and Cyclic Ethers by an Isolated Fungus

Kunichika Nakamiya, Syunji Hashimoto, Hiroyasu Ito, John S. Edmonds, Masatoshi Morita

Appl Environ Microbiol. 2005 March; 71(3): 1254–1258. doi: 10.1128/AEM.71.3.1254-1258.2005

PMCID:: PMC1065185

Abstract Full Text PDF–174K

Functional Characterization of Two Cytochrome P450 Monooxygenase Genes, P450-1 and P450-4, of the Gibberellic Acid Gene Cluster in Fusarium proliferatum (Gibberella fujikuroi MP-D)

S. Malonek, M. C. Rojas, P. Hedden, P. Gaskin, P. Hopkins, B. Tudzynski

Appl Environ Microbiol. 2005 March; 71(3): 1462–1472. doi: 10.1128/AEM.71.3.1462-1472.2005

PMCID:: PMC1065163

Abstract Full Text PDF–433K

Intracellular pH Distribution in Saccharomyces cerevisiae Cell Populations, Analyzed by Flow Cytometry

Minoska Valli, Michael Sauer, Paola Branduardi, Nicole Borth, Danilo Porro, Diethard Mattanovich

Appl Environ Microbiol. 2005 March; 71(3): 1515–1521. doi: 10.1128/AEM.71.3.1515-1521.2005

PMCID:: PMC1065191

Abstract Full Text PDF–123K

Two α(1-3) Glucan Synthases with Different Functions in Aspergillus fumigatus

A. Beauvais, D. Maubon, S. Park, W. Morelle, M. Tanguy, M. Huerre, D. S. Perlin, J. P. Latgé

Appl Environ Microbiol. 2005 March; 71(3): 1531–1538. doi: 10.1128/AEM.71.3.1531-1538.2005

PMCID:: PMC1065186

Abstract Full Text PDF–470K

Role of cis-Acting Sites NorL, a TATA Box, and AflR1 in nor-1 Transcriptional Activation in Aspergillus parasiticus

Michael J. Miller, Ludmila V. Roze, Frances Trail, John E. Linz

Appl Environ Microbiol. 2005 March; 71(3): 1539–1545. doi: 10.1128/AEM.71.3.1539-1545.2005

PMCID:: PMC1065134

Abstract Full Text PDF–287K

Signal Transduction by Tga3, a Novel G Protein α Subunit of Trichoderma atroviride

Susanne Zeilinger, Barbara Reithner, Valeria Scala, Isabel Peissl, Matteo Lorito, Robert L. Mach

Appl Environ Microbiol. 2005 March; 71(3): 1591–1597. doi: 10.1128/AEM.71.3.1591-1597.2005

PMCID:: PMC1065137

Abstract Full Text PDF–368K

Public Health Microbiology

Acquisition of Resistance to Extended-Spectrum Cephalosporins by Salmonella enterica subsp. enterica Serovar Newport and Escherichia coli in the Turkey Poult Intestinal Tract

C. Poppe, L. C. Martin, C. L. Gyles, R. Reid-Smith, P. Boerlin, S. A. McEwen, J. F. Prescott, K. R. Forward

Appl Environ Microbiol. 2005 March; 71(3): 1184–1192. doi: 10.1128/AEM.71.3.1184-1192.2005

PMCID:: PMC1065184

Abstract Full Text PDF–119K

Analyses of Livestock Production, Waste Storage, and Pathogen Levels and Prevalences in Farm Manures

M. L. Hutchison, L. D. Walters, S. M. Avery, F. Munro, A. Moore

Appl Environ Microbiol. 2005 March; 71(3): 1231–1236. doi: 10.1128/AEM.71.3.1231-1236.2005

PMCID:: PMC1065162

Abstract Full Text PDF–71K

Identification of a New Borrelia Species among Small Mammals in Areas of Northern Spain Where Lyme Disease Is Endemic

Horacio Gil, Marta Barral, Raquel Escudero, Ana L. García-Pérez, Pedro Anda

Appl Environ Microbiol. 2005 March; 71(3): 1336–1345. doi: 10.1128/AEM.71.3.1336-1345.2005

PMCID:: PMC1065187

Abstract Full Text PDF–237K

Isolation and Characterization of Novel Giant Stenotrophomonas maltophilia Phage [var phi]

SMA5

Hsiao-Chuan Chang, Chiy-Rong Chen, Juey-Wen Lin, Gwan-Han Shen, Kai-Ming Chang, Yi-Hsiung Tseng, Shu-Fen Weng

Appl Environ Microbiol. 2005 March; 71(3): 1387–1393. doi: 10.1128/AEM.71.3.1387-1393.2005

PMCID:: PMC1065149

Abstract Full Text PDF–159K

Patterns of Antimicrobial Resistance Observed in Escherichia coli Isolates Obtained from Domestic- and Wild-Animal Fecal Samples, Human Septage, and Surface Water

Raida S. Sayah, John B. Kaneene, Yvette Johnson, RoseAnn Miller

Appl Environ Microbiol. 2005 March; 71(3): 1394–1404. doi: 10.1128/AEM.71.3.1394-1404.2005

PMCID:: PMC1065171

Abstract Full Text PDF–273K

Presence of Noroviruses and Other Enteric Viruses in Sewage and Surface Waters in The Netherlands

W. J. Lodder, A. M. de Roda Husman

Appl Environ Microbiol. 2005 March; 71(3): 1453–1461. doi: 10.1128/AEM.71.3.1453-1461.2005

PMCID:: PMC1065170

Abstract Full Text PDF–306K

Enhanced Survival of Salmonella enterica in Vesicles Released by a Soilborne Tetrahymena Species

M. T. Brandl, B. M. Rosenthal, A. F. Haxo, S. G. Berk

Appl Environ Microbiol. 2005 March; 71(3): 1562–1569. doi: 10.1128/AEM.71.3.1562-1569.2005

PMCID:: PMC1065168

Abstract Full Text PDF–366K

Natural Dissemination of Bacillus anthracis Spores in Northern Canada

D. C. Dragon, D. E. Bader, J. Mitchell, N. Woollen

Appl Environ Microbiol. 2005 March; 71(3): 1610–1615. doi: 10.1128/AEM.71.3.1610-1615.2005

PMCID:: PMC1065140

Abstract Full Text PDF–735K

Genomic Comparisons of Salmonella enterica Serovar Dublin, Agona, and Typhimurium Strains Recently Isolated from Milk Filters and Bovine Samples from Ireland, Using a Salmonella Microarray

F. J. Reen, E. F. Boyd, S. Porwollik, B. P. Murphy, D. Gilroy, S. Fanning, M. McClelland

Appl Environ Microbiol. 2005 March; 71(3): 1616–1625. doi: 10.1128/AEM.71.3.1616-1625.2005

PMCID:: PMC1065154

Abstract Full Text PDF–749K

Comparison of Diversities of Escherichia coli O157 Shed from a Cohort of Spring-Born Beef Calves at Pasture and in Housing

Leila Vali, Michael C. Pearce, Karen A. Wisely, Ahmed Hamouda, Hazel I. Knight, Alastair W. Smith, Sebastian G. B. Amyes

Appl Environ Microbiol. 2005 March; 71(3): 1648–1652. doi: 10.1128/AEM.71.3.1648-1652.2005

PMCID:: PMC1065151

Abstract Full Text PDF–131K

Effect of Batch-Process Solar Disinfection on Survival of Cryptosporidium parvum Oocysts in Drinking Water

F. Méndez-Hermida, J. A. Castro-Hermida, E. Ares-Mazás, S. C. Kehoe, K. G. McGuigan

Appl Environ Microbiol. 2005 March; 71(3): 1653–1654. doi: 10.1128/AEM.71.3.1653-1654.2005

PMCID:: PMC1065141

Abstract Full Text PDF–43K

Environmental Microbiology

Rapid Acyl-Homoserine Lactone Quorum Signal Biodegradation in Diverse Soils

Ya-Juan Wang, Jared Renton Leadbetter

Appl Environ Microbiol. 2005 March; 71(3): 1291–1299. doi: 10.1128/AEM.71.3.1291-1299.2005

PMCID:: PMC1065188

Abstract Full Text PDF–262K

Microbial Ecology

Species Abundance and Diversity of Burkholderia cepacia Complex in the Environment

Alban Ramette, John J. LiPuma, James M. Tiedje

Appl Environ Microbiol. 2005 March; 71(3): 1193–1201. doi: 10.1128/AEM.71.3.1193-1201.2005

PMCID:: PMC1065178

Abstract Full Text PDF–238K

Stable-Isotope Probing of Bacteria Capable of Degrading Salicylate, Naphthalene, or Phenanthrene in a Bioreactor Treating Contaminated Soil

David R. Singleton, Sabrina N. Powell, Ramiah Sangaiah, Avram Gold, Louise M. Ball, Michael D. Aitken

Appl Environ Microbiol. 2005 March; 71(3): 1202–1209. doi: 10.1128/AEM.71.3.1202-1209.2005

PMCID:: PMC1065189

Abstract Full Text PDF–237K

Differential Activities of Four Lactobacillus casei Promoters during Bacterial Transit through the Gastrointestinal Tracts of Human-Microbiota-Associated Mice

R. Oozeer, J. P. Furet, N. Goupil-Feuillerat, J. Anba, J. Mengaud, G. Corthier

Appl Environ Microbiol. 2005 March; 71(3): 1356–1363. doi: 10.1128/AEM.71.3.1356-1363.2005

PMCID:: PMC1065133

Abstract Full Text PDF–138K

Flow-Cytometric Cell Sorting and Subsequent Molecular Analyses for Culture-Independent Identification of Bacterioplankton Involved in Dimethylsulfoniopropionate Transformations

Xiaozhen Mou, Mary Ann Moran, Ramunas Stepanauskas, José M. González, Robert E. Hodson

Appl Environ Microbiol. 2005 March; 71(3): 1405–1416. doi: 10.1128/AEM.71.3.1405-1416.2005

PMCID:: PMC1065183

Abstract Full Text PDF–660K

Quantitative Molecular Assay for Fingerprinting Microbial Communities of Wastewater and Estrogen-Degrading Consortia

Chang-Ping Yu, Rajiv Ahuja, Gary Sayler, Kung-Hui Chu

Appl Environ Microbiol. 2005 March; 71(3): 1433–1444. doi: 10.1128/AEM.71.3.1433-1444.2005

PMCID:: PMC1065124

Abstract Full Text PDF–323K

Coexistence of Bacterial Sulfide Oxidizers, Sulfate Reducers, and Spirochetes in a Gutless Worm (Oligochaeta) from the Peru Margin

Anna Blazejak, Christer Erséus, Rudolf Amann, Nicole Dubilier

Appl Environ Microbiol. 2005 March; 71(3): 1553–1561. doi: 10.1128/AEM.71.3.1553-1561.2005

PMCID:: PMC1065125

Abstract Full Text PDF–605K

Genomic Analysis of Bacteriophage ΦJL001: Insights into Its Interaction with a Sponge-Associated Alpha-Proteobacterium

Jayme E. Lohr, Feng Chen, Russell T. Hill

Appl Environ Microbiol. 2005 March; 71(3): 1598–1609. doi: 10.1128/AEM.71.3.1598-1609.2005

PMCID:: PMC1065128

Abstract Full Text PDF–697K

Dynamics of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase Gene Expression in the Coccolithophorid Coccolithus pelagicus during a Tracer Release Experiment in the Northeast Atlantic

Michael Wyman, John T. Davies, Sylvia Hodgson, Glen A. Tarran, Duncan A. Purdie

Appl Environ Microbiol. 2005 March; 71(3): 1659–1661. doi: 10.1128/AEM.71.3.1659-1661.2005

PMCID:: PMC1065161

Abstract Full Text PDF–124K

Geomicrobiology

Spatially Resolved Characterization of Biogenic Manganese Oxide Production within a Bacterial Biofilm

Brandy Toner, Sirine Fakra, Mario Villalobos, Tony Warwick, Garrison Sposito

Appl Environ Microbiol. 2005 March; 71(3): 1300–1310. doi: 10.1128/AEM.71.3.1300-1310.2005

PMCID:: PMC1065152

Abstract Full Text PDF–539K

Food Microbiology

Efficient DNA Fingerprinting of Clostridium botulinum Types A, B, E, and F by Amplified Fragment Length Polymorphism Analysis

Riikka Keto-Timonen, Mari Nevas, Hannu Korkeala

Appl Environ Microbiol. 2005 March; 71(3): 1148–1154. doi: 10.1128/AEM.71.3.1148-1154.2005

PMCID:: PMC1065150

Abstract Full Text PDF–321K

Induction of Shiga Toxin-Converting Prophage in Escherichia coli by High Hydrostatic Pressure

Abram Aertsen, David Faster, Chris W. Michiels

Appl Environ Microbiol. 2005 March; 71(3): 1155–1162. doi: 10.1128/AEM.71.3.1155-1162.2005

PMCID:: PMC1065167

Abstract Full Text PDF–233K

Toxin-Producing Ability among Bacillus spp. Outside the Bacillus cereus Group

Cecilie From, Rudiger Pukall, Peter Schumann, Víctor Hormazábal, Per Einar Granum

Appl Environ Microbiol. 2005 March; 71(3): 1178–1183. doi: 10.1128/AEM.71.3.1178-1183.2005

PMCID:: PMC1065142

Abstract Full Text PDF–76K

Mycobacterium avium Subspecies paratuberculosis Cultured from Locally and Commercially Pasteurized Cow's Milk in the Czech Republic

Wuhib Y. Ayele, Petra Svastova, Petr Roubal, Milan Bartos, Ivo Pavlik

Appl Environ Microbiol. 2005 March; 71(3): 1210–1214. doi: 10.1128/AEM.71.3.1210-1214.2005

PMCID:: PMC1065148

Abstract Full Text PDF–87K

Enumeration and Diversity of Campylobacters and Bacteriophages Isolated during the Rearing Cycles of Free-Range and Organic Chickens

A. El-Shibiny, P. L. Connerton, I. F. Connerton

Appl Environ Microbiol. 2005 March; 71(3): 1259–1266. doi: 10.1128/AEM.71.3.1259-1266.2005

PMCID:: PMC1065130

Abstract Full Text PDF–96K

Diversity of Proteolytic Clostridium botulinum Strains, Determined by a Pulsed-Field Gel Electrophoresis Approach

Mari Nevas, Miia Lindström, Sebastian Hielm, K. Johanna Björkroth, Michael W. Peck, Hannu Korkeala

Appl Environ Microbiol. 2005 March; 71(3): 1311–1317. doi: 10.1128/AEM.71.3.1311-1317.2005

Correction in:: Appl Environ Microbiol. 2006 April; 72(4): 3084.

PMCID:: PMC1065132

Abstract Full Text PDF–293K Correction

Incidence and Diversity of Potentially Highly Heat-Resistant Spores Isolated at Dairy Farms

Patsy Scheldeman, Annelies Pil, Lieve Herman, Paul De Vos, Marc Heyndrickx

Appl Environ Microbiol. 2005 March; 71(3): 1480–1494. doi: 10.1128/AEM.71.3.1480-1494.2005

PMCID:: PMC1065131

Abstract Full Text PDF–116K

Overproduction of Heterologous Mannitol 1-Phosphatase: a Key Factor for Engineering Mannitol Production by Lactococcus lactis

H. Wouter Wisselink, Antoine P. H. A. Moers, Astrid E. Mars, Marcel H. N. Hoefnagel, Willem M. de Vos, Jeroen Hugenholtz

Appl Environ Microbiol. 2005 March; 71(3): 1507–1514. doi: 10.1128/AEM.71.3.1507-1514.2005

PMCID:: PMC1065179

Abstract Full Text PDF–163K

Genetic Diversity in the Lactose Operons of Lactobacillus helveticus Strains and Its Relationship to the Role of These Strains as Commercial Starter Cultures

M. J. Callanan, T. P. Beresford, R. P. Ross

Appl Environ Microbiol. 2005 March; 71(3): 1655–1658. doi: 10.1128/AEM.71.3.1655-1658.2005

PMCID:: PMC1065143

Abstract Full Text PDF–223K

Probiotic Bacteria May Become Dormant during Storage

Sampo J. Lahtinen, Miguel Gueimonde, Arthur C. Ouwehand, Johanna P. Reinikainen, Seppo J. Salminen

Appl Environ Microbiol. 2005 March; 71(3): 1662–1663. doi: 10.1128/AEM.71.3.1662-1663.2005

PMCID:: PMC1065127

Abstract Full Text PDF–50K

Plant Microbiology

Biosynthesis of Auxin by the Gram-Positive Phytopathogen Rhodococcus fascians Is Controlled by Compounds Specific to Infected Plant Tissues

Olivier Vandeputte, Sevgi Öden, Adeline Mol, Danny Vereecke, Koen Goethals, Mondher El Jaziri, Els Prinsen

Appl Environ Microbiol. 2005 March; 71(3): 1169–1177. doi: 10.1128/AEM.71.3.1169-1177.2005

PMCID:: PMC1065166

Abstract Full Text PDF–318K

Nodulation of Lupinus albus by Strains of Ochrobactrum lupini sp. nov.

Martha E. Trujillo, Anne Willems, Adriana Abril, Ana-María Planchuelo, Raúl Rivas, Dolores Ludeña, Pedro F. Mateos, Eustoquio Martínez-Molina, Encarna Velázquez

Appl Environ Microbiol. 2005 March; 71(3): 1318–1327. doi: 10.1128/AEM.71.3.1318-1327.2005

Correction in:: Appl Environ Microbiol. 2006 June; 72(6): 4500.

PMCID:: PMC1065145

Abstract Full Text PDF–361K Correction

In Vivo Monitoring of Obligate Biotrophic Pathogen Growth by Kinetic PCR

Brian Boyle, Richard C. Hamelin, Armand Séguin

Appl Environ Microbiol. 2005 March; 71(3): 1546–1552. doi: 10.1128/AEM.71.3.1546-1552.2005

PMCID:: PMC1065157

Abstract Full Text PDF–277K

Invertebrate Microbiology

Fingerprinting of Bacillus thuringiensis Type Strains and Isolates by Using Bacillus cereus Group-Specific Repetitive Extragenic Palindromic Sequence-Based PCR Analysis

Arturo Reyes-Ramirez, Jorge E. Ibarra

Appl Environ Microbiol. 2005 March; 71(3): 1346–1355. doi: 10.1128/AEM.71.3.1346-1355.2005

PMCID:: PMC1065192

Abstract Full Text PDF–334K

“Endomicrobia”: Cytoplasmic Symbionts of Termite Gut Protozoa Form a Separate Phylum of Prokaryotes

Ulrich Stingl, Renate Radek, Hong Yang, Andreas Brune

Appl Environ Microbiol. 2005 March; 71(3): 1473–1479. doi: 10.1128/AEM.71.3.1473-1479.2005

PMCID:: PMC1065190

Abstract Full Text PDF–378K

Optical Brighteners Do Not Influence Covert Baculovirus Infection of Spodoptera frugiperda

Ana-Mabel Martínez, Trevor Williams, Miguel López-Ferber, Primitivo Caballero

Appl Environ Microbiol. 2005 March; 71(3): 1668–1670. doi: 10.1128/AEM.71.3.1668-1670.2005

PMCID:: PMC1065160

Abstract Full Text PDF–95K

Methods

Immobilization of Escherichia coli Cells by Use of the Antimicrobial Peptide Cecropin P1

Kalvin Gregory, Charlene M. Mello

Appl Environ Microbiol. 2005 March; 71(3): 1130–1134. doi: 10.1128/AEM.71.3.1130-1134.2005

PMCID:: PMC1065138

Abstract Full Text PDF–93K

Development of Procedures for Direct Extraction of Cryptosporidium DNA from Water Concentrates and for Relief of PCR Inhibitors

Jianlin Jiang, Kerri A. Alderisio, Ajaib Singh, Lihua Xiao

Appl Environ Microbiol. 2005 March; 71(3): 1135–1141. doi: 10.1128/AEM.71.3.1135-1141.2005

PMCID:: PMC1065175

Abstract Full Text PDF–141K

Poly(A) Polymerase Modification and Reverse Transcriptase PCR Amplification of Environmental RNA

Lina M. Botero, Seth D'Imperio, Mark Burr, Timothy R. McDermott, Mark Young, Daniel J. Hassett

Appl Environ Microbiol. 2005 March; 71(3): 1267–1275. doi: 10.1128/AEM.71.3.1267-1275.2005

PMCID:: PMC1065135

Abstract Full Text PDF–231K

16S rRNA Gene-Based Oligonucleotide Microarray for Environmental Monitoring of the Betaproteobacterial Order “Rhodocyclales”

Alexander Loy, Claudia Schulz, Sebastian Lücker, Andreas Schöpfer-Wendels, Kilian Stoecker, Christian Baranyi, Angelika Lehner, Michael Wagner

Appl Environ Microbiol. 2005 March; 71(3): 1373–1386. doi: 10.1128/AEM.71.3.1373-1386.2005

PMCID:: PMC1065177

Abstract Full Text PDF–466K

Quantitative-PCR Assessment of Cryptosporidium parvum Cell Culture Infection

George D. Di Giovanni, Mark W. LeChevallier

Appl Environ Microbiol. 2005 March; 71(3): 1495–1500. doi: 10.1128/AEM.71.3.1495-1500.2005

PMCID:: PMC1065146

Abstract Full Text PDF–189K

Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness

Patrick D. Schloss, Jo Handelsman

Appl Environ Microbiol. 2005 March; 71(3): 1501–1506. doi: 10.1128/AEM.71.3.1501-1506.2005

PMCID:: PMC1065144

Abstract Full Text PDF–126K

Chemotaxonomic Identification of Single Bacteria by Micro-Raman Spectroscopy: Application to Clean-Room-Relevant Biological Contaminations

Petra Rösch, Michaela Harz, Michael Schmitt, Klaus-Dieter Peschke, Olaf Ronneberger, Hans Burkhardt, Hans-Walter Motzkus, Markus Lankers, Stefan Hofer, Hans Thiele, Jürgen Popp

Appl Environ Microbiol. 2005 March; 71(3): 1626–1637. doi: 10.1128/AEM.71.3.1626-1637.2005

PMCID:: PMC1065155

Abstract Full Text PDF–668K

Application of a Newly Developed ARB Software-Integrated Tool for In Silico Terminal Restriction Fragment Length Polymorphism Analysis Reveals the Dominance of a Novel pmoA Cluster in a Forest Soil

Peter Ricke, Steffen Kolb, Gesche Braker

Appl Environ Microbiol. 2005 March; 71(3): 1671–1673. doi: 10.1128/AEM.71.3.1671-1673.2005

PMCID:: PMC1065180

Abstract Full Text PDF–197K

Biodegradation

Differential Degradation of Nonylphenol Isomers by Sphingomonas xenophaga Bayram

Frédéric L. P. Gabriel, Walter Giger, Klaus Guenther, Hans-Peter E. Kohler

Appl Environ Microbiol. 2005 March; 71(3): 1123–1129. doi: 10.1128/AEM.71.3.1123-1129.2005

PMCID:: PMC1065174

Abstract Full Text PDF–185K

Degradation of Wheat Straw by Fibrobacter succinogenes S85: a Liquid- and Solid-State Nuclear Magnetic Resonance Study

M. Matulova, R. Nouaille, P. Capek, M. Péan, E. Forano, A.-M. Delort

Appl Environ Microbiol. 2005 March; 71(3): 1247–1253. doi: 10.1128/AEM.71.3.1247-1253.2005

PMCID:: PMC1065164

Abstract Full Text PDF–146K

Evolutionary and Genomic Microbiology

Rhizobial 16S rRNA and dnaK Genes: Mosaicism and the Uncertain Phylogenetic Placement of Rhizobium galegae

B. D. Eardly, S. M. Nour, P. van Berkum, R. K. Selander

Appl Environ Microbiol. 2005 March; 71(3): 1328–1335. doi: 10.1128/AEM.71.3.1328-1335.2005

PMCID:: PMC1065159

Abstract Full Text PDF–323K

Erratum

Microbial Quality and Direct PCR Identification of Lactic Acid Bacteria and Nonpathogenic Staphylococci from Artisanal Low-Acid Sausages

T. Aymerich, B. Martín, M. Garriga, M. Hugas

Appl Environ Microbiol. 2005 March; 71(3): 1674. doi: 10.1128/AEM.71.3.1674.2005

Corrects:: Appl Environ Microbiol. 2003 August; 69(8): 4583–4594.

PMCID:: PMC1065195

Correction PDF–18K Original Article

Author’s Correction

Peptide Surface Display and Secretion Using Two LPXTG-Containing Surface Proteins from Lactobacillus fermentum BR11

Mark S. Turner, Louise M. Hafner, Terry Walsh, Philip M. Giffard

Appl Environ Microbiol. 2005 March; 71(3): 1675. doi: 10.1128/AEM.71.3.1675.2005

Corrects:: Appl Environ Microbiol. 2002 December; 68(12): 5843–5859.

PMCID:: PMC1065194

Correction PDF–16K Original Article

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