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Volume 69(11);  November 2003
Minireview
Energy Conservation in Acetogenic Bacteria
Volker Müller
Appl Environ Microbiol. 2003 November; 69(11): 6345–6353. doi: 10.1128/AEM.69.11.6345-6353.2003
PMCID:
PMC262307
Full Text PDF–736K
Genetics and Molecular Biology
Cold Shock Response and Major Cold Shock Proteins of Vibrio cholerae
Partha Pratim Datta, Rupak K. Bhadra
Appl Environ Microbiol. 2003 November; 69(11): 6361–6369. doi: 10.1128/AEM.69.11.6361-6369.2003
PMCID:
PMC262262
Abstract Full Text PDF–2.3M
Nitrogen-Regulated Hypermutator Strain of Synechococcus sp. for Use in In Vivo Artificial Evolution
Daniel Emlyn-Jones, G. Dean Price, T. John Andrews
Appl Environ Microbiol. 2003 November; 69(11): 6427–6433. doi: 10.1128/AEM.69.11.6427-6433.2003
PMCID:
PMC262265
Abstract Full Text PDF–464K
Viability of and Plasmid Retention in Frozen Recombinant Escherichia coli over Time: a Ten-Year Prospective Study
Gina L. Koenig
Appl Environ Microbiol. 2003 November; 69(11): 6605–6609. doi: 10.1128/AEM.69.11.6605-6609.2003
PMCID:
PMC262308
Abstract Full Text PDF–111K
Molecular Characterization and Substrate Preference of a Polycyclic Aromatic Hydrocarbon Dioxygenase from Cycloclasticus sp. Strain A5
Yuki Kasai, Kazutoshi Shindo, Shigeaki Harayama, Norihiko Misawa
Appl Environ Microbiol. 2003 November; 69(11): 6688–6697. doi: 10.1128/AEM.69.11.6688-6697.2003
PMCID:
PMC262276
Abstract Full Text PDF–213K
Plant Transformation by Coinoculation with a Disarmed Agrobacterium tumefaciens Strain and an Escherichia coli Strain Carrying Mobilizable Transgenes
Katherine M. Pappas, Stephen C. Winans
Appl Environ Microbiol. 2003 November; 69(11): 6731–6739. doi: 10.1128/AEM.69.11.6731-6739.2003
PMCID:
PMC262305
Abstract Full Text PDF–580K
Usefulness of rpoB Gene Sequencing for Identification of Afipia and Bosea Species, Including a Strategy for Choosing Discriminative Partial Sequences
Atieh Khamis, Philippe Colson, Didier Raoult, Bernard La Scola
Appl Environ Microbiol. 2003 November; 69(11): 6740–6749. doi: 10.1128/AEM.69.11.6740-6749.2003
PMCID:
PMC262318
Abstract Full Text PDF–151K
Sequencing and Characterization of pBM400 from Bacillus megaterium QM B1551
Michael D. Scholle, Christen A. White, Muthusamy Kunnimalaiyaan, Patricia S. Vary
Appl Environ Microbiol. 2003 November; 69(11): 6888–6898. doi: 10.1128/AEM.69.11.6888-6898.2003
PMCID:
PMC262321
Abstract Full Text PDF–1.0M
Physiology and Biotechnology
Use of Bacterial γ-Glutamyltranspeptidase for Enzymatic Synthesis of γ-d-Glutamyl Compounds
Hideyuki Suzuki, Shunsuke Izuka, Hiromichi Minami, Nobukazu Miyakawa, Sayaka Ishihara, Hidehiko Kumagai
Appl Environ Microbiol. 2003 November; 69(11): 6399–6404. doi: 10.1128/AEM.69.11.6399-6404.2003
PMCID:
PMC262288
Abstract Full Text PDF–269K
Innovative Approach for Improvement of an Antibiotic-Overproducing Industrial Strain of Streptomyces albus
Norimasa Tamehiro, Takeshi Hosaka, Jun Xu, Haifeng Hu, Noboru Otake, Kozo Ochi
Appl Environ Microbiol. 2003 November; 69(11): 6412–6417. doi: 10.1128/AEM.69.11.6412-6417.2003
PMCID:
PMC262278
Abstract Full Text PDF–949K
Bioaccumulation of Copper Ions by Escherichia coli Expressing Vanabin Genes from the Vanadium-Rich Ascidian Ascidia sydneiensis samea
Tatsuya Ueki, Yasuhisa Sakamoto, Nobuo Yamaguchi, Hitoshi Michibata
Appl Environ Microbiol. 2003 November; 69(11): 6442–6446. doi: 10.1128/AEM.69.11.6442-6446.2003
PMCID:
PMC262315
Abstract Full Text PDF–104K
Modification of the Monomer Composition of Polyhydroxyalkanoate Synthesized in Saccharomyces cerevisiae Expressing Variants of the β-Oxidation-Associated Multifunctional Enzyme
Silvia Marchesini, Nadine Erard, Tuomo Glumoff, J. Kalervo Hiltunen, Yves Poirier
Appl Environ Microbiol. 2003 November; 69(11): 6495–6499. doi: 10.1128/AEM.69.11.6495-6499.2003
PMCID:
PMC262279
Abstract Full Text PDF–188K
Oriented Adhesion of Escherichia coli to Polystyrene Particles
Joseph F. Jones, Jason D. Feick, Daniel Imoudu, Nkiru Chukwumah, Margot Vigeant, Darrell Velegol
Appl Environ Microbiol. 2003 November; 69(11): 6515–6519. doi: 10.1128/AEM.69.11.6515-6519.2003
PMCID:
PMC262287
Abstract Full Text PDF–349K
Construction of Escherichia coli Strains for Conversion of Nitroacetophenones to ortho-Aminophenols
Venkateswarlu Kadiyala, Lloyd J. Nadeau, Jim C. Spain
Appl Environ Microbiol. 2003 November; 69(11): 6520–6526. doi: 10.1128/AEM.69.11.6520-6526.2003
PMCID:
PMC262294
Abstract Full Text PDF–132K
Gene Dosage Effect of l-Proline Biosynthetic Enzymes on l-Proline Accumulation and Freeze Tolerance in Saccharomyces cerevisiae
Yukiyasu Terao, Shigeru Nakamori, Hiroshi Takagi
Appl Environ Microbiol. 2003 November; 69(11): 6527–6532. doi: 10.1128/AEM.69.11.6527-6532.2003
PMCID:
PMC262311
Abstract Full Text PDF–495K
Highly Efficient Biotransformation of Eugenol to Ferulic Acid and Further Conversion to Vanillin in Recombinant Strains of Escherichia coli
Jörg Overhage, Alexander Steinbüchel, Horst Priefert
Appl Environ Microbiol. 2003 November; 69(11): 6569–6576. doi: 10.1128/AEM.69.11.6569-6576.2003
PMCID:
PMC262297
Abstract Full Text PDF–575K
Microaerophilic Cooperation of Reductive and Oxidative Pathways Allows Maximal Photosynthetic Membrane Biosynthesis in Rhodospirillum rubrum
Hartmut Grammel, Ernst-Dieter Gilles, Robin Ghosh
Appl Environ Microbiol. 2003 November; 69(11): 6577–6586. doi: 10.1128/AEM.69.11.6577-6586.2003
PMCID:
PMC262267
Abstract Full Text PDF–446K
Characterization of a Lactococcus lactis Strain That Secretes a Major Epitope of Bovine Beta-Lactoglobulin and Evaluation of Its Immunogenicity in Mice
Jean-Marc Chatel, Sebastien Nouaille, Karine Adel-Patient, Yves Le Loir, Herman Boe, Alexandra Gruss, Jean-Michel Wal, Philippe Langella
Appl Environ Microbiol. 2003 November; 69(11): 6620–6627. doi: 10.1128/AEM.69.11.6620-6627.2003
PMCID:
PMC262270
Abstract Full Text PDF–299K
Biosynthesis of Yersiniabactin, a Complex Polyketide-Nonribosomal Peptide, Using Escherichia coli as a Heterologous Host
Blaine A. Pfeifer, Clay C. C. Wang, Christopher T. Walsh, Chaitan Khosla
Appl Environ Microbiol. 2003 November; 69(11): 6698–6702. doi: 10.1128/AEM.69.11.6698-6702.2003
PMCID:
PMC262314
Abstract Full Text PDF–121K
Aerobic Denitrification of Pseudomonas aeruginosa Monitored by Online NAD(P)H Fluorescence
Fan Chen, Qing Xia, Lu-Kwang Ju
Appl Environ Microbiol. 2003 November; 69(11): 6715–6722. doi: 10.1128/AEM.69.11.6715-6722.2003
PMCID:
PMC262322
Abstract Full Text PDF–174K
Peptide Ligands That Bind Selectively to Spores of Bacillus subtilis and Closely Related Species
Jordan Knurr, Orsolya Benedek, Jennifer Heslop, Robert B. Vinson, Jeremy A. Boydston, Joanne McAndrew, John F. Kearney, Charles L. Turnbough, Jr.
Appl Environ Microbiol. 2003 November; 69(11): 6841–6847. doi: 10.1128/AEM.69.11.6841-6847.2003
PMCID:
PMC262252
Abstract Full Text PDF–723K
Development of a Synthetic Minimal Medium for Listeria monocytogenes
Hsiang-Ning Tsai, David A. Hodgson
Appl Environ Microbiol. 2003 November; 69(11): 6943–6945. doi: 10.1128/AEM.69.11.6943-6945.2003
PMCID:
PMC262277
Abstract Full Text PDF–589K
Phenylacetic and Phenylpropionic Acids Do Not Affect Xylan Degradation by Ruminococcus albus
Carine Reveneau, Sarah E. Adams, M. A. Cotta, M. Morrison
Appl Environ Microbiol. 2003 November; 69(11): 6954–6958. doi: 10.1128/AEM.69.11.6954-6958.2003
PMCID:
PMC262313
Abstract Full Text PDF–248K
Mycology
Involvement of Two Cytosolic Enzymes and a Novel Intermediate, 5′-Oxoaverantin, in the Pathway from 5′-Hydroxyaverantin to Averufin in Aflatoxin Biosynthesis
Emi Sakuno, Kimiko Yabe, Hiromitsu Nakajima
Appl Environ Microbiol. 2003 November; 69(11): 6418–6426. doi: 10.1128/AEM.69.11.6418-6426.2003
PMCID:
PMC262255
Abstract Full Text PDF–763K
Reactive Oxygen Species and Induction of Lignin Peroxidase in Phanerochaete chrysosporium
Paula A. Belinky, Nufar Flikshtein, Sergey Lechenko, Shimon Gepstein, Carlos G. Dosoretz
Appl Environ Microbiol. 2003 November; 69(11): 6500–6506. doi: 10.1128/AEM.69.11.6500-6506.2003
PMCID:
PMC262269
Abstract Full Text PDF–298K
Fungal Lipid Accumulation and Development of Mycelial Structures by Two Arbuscular Mycorrhizal Fungi
Ingrid M. van Aarle, Pål Axel Olsson
Appl Environ Microbiol. 2003 November; 69(11): 6762–6767. doi: 10.1128/AEM.69.11.6762-6767.2003
PMCID:
PMC262256
Abstract Full Text PDF–132K
FUM9 Is Required for C-5 Hydroxylation of Fumonisins and Complements the Meitotically Defined Fum3 Locus in Gibberella moniliformis
Robert A. E. Butchko, Ronald D. Plattner, Robert H. Proctor
Appl Environ Microbiol. 2003 November; 69(11): 6935–6937. doi: 10.1128/AEM.69.11.6935-6937.2003
PMCID:
PMC262316
Abstract Full Text PDF–142K
Public Health Microbiology
Receiver Operating Characteristic Curve Analysis of Beach Water Quality Indicator Variables
Ann Michelle Morrison, Kelly Coughlin, James P. Shine, Brent A. Coull, Andrea C. Rex
Appl Environ Microbiol. 2003 November; 69(11): 6405–6411. doi: 10.1128/AEM.69.11.6405-6411.2003
PMCID:
PMC262247
Abstract Full Text PDF–131K
Effect of the Environment on Genotypic Diversity of Actinomyces naeslundii and Streptococcus oralis in the Oral Biofilm
James S. Paddick, Susan R. Brailsford, Edwina A. M. Kidd, Steven C. Gilbert, Douglas T. Clark, Sharmin Alam, Zoe J. Killick, David Beighton
Appl Environ Microbiol. 2003 November; 69(11): 6475–6480. doi: 10.1128/AEM.69.11.6475-6480.2003
PMCID:
PMC262309
Abstract Full Text PDF–883K
Methicillin (Oxacillin)-Resistant Staphylococcus aureus Strains Isolated from Major Food Animals and Their Potential Transmission to Humans
John Hwa Lee
Appl Environ Microbiol. 2003 November; 69(11): 6489–6494. doi: 10.1128/AEM.69.11.6489-6494.2003
PMCID:
PMC262320
Abstract Full Text PDF–269K
Evaluation of F+ RNA and DNA Coliphages as Source-Specific Indicators of Fecal Contamination in Surface Waters
Dana Cole, Sharon C. Long, Mark D. Sobsey
Appl Environ Microbiol. 2003 November; 69(11): 6507–6514. doi: 10.1128/AEM.69.11.6507-6514.2003
PMCID:
PMC262259
Abstract Full Text PDF–440K
Gamma-Proteobacteria Aquicella lusitana gen. nov., sp. nov., and Aquicella siphonis sp. nov. Infect Protozoa and Require Activated Charcoal for Growth in Laboratory Media
Paula Santos, Isabel Pinhal, Fred A. Rainey, Nuno Empadinhas, Joana Costa, Barry Fields, Robert Benson, António Veríssimo, Milton S. da Costa
Appl Environ Microbiol. 2003 November; 69(11): 6533–6540. doi: 10.1128/AEM.69.11.6533-6540.2003
PMCID:
PMC262295
Abstract Full Text PDF–460K
Reverse Transcription-PCR Analysis of Bottled and Natural Mineral Waters for the Presence of Noroviruses
Gilbert Thierry Lamothe, Thierry Putallaz, Han Joosten, Joey D. Marugg
Appl Environ Microbiol. 2003 November; 69(11): 6541–6549. doi: 10.1128/AEM.69.11.6541-6549.2003
PMCID:
PMC262324
Abstract Full Text PDF–93K
Diversity and Succession of the Intestinal Bacterial Community of the Maturing Broiler Chicken
Jiangrang Lu, Umelaalim Idris, Barry Harmon, Charles Hofacre, John J. Maurer, Margie D. Lee
Appl Environ Microbiol. 2003 November; 69(11): 6816–6824. doi: 10.1128/AEM.69.11.6816-6824.2003
PMCID:
PMC262306
Abstract Full Text PDF–322K
Variation in Resistance of Mycobacterium paratuberculosis to Acid Environments as a Function of Culture Medium
Nackmoon Sung, Michael T. Collins
Appl Environ Microbiol. 2003 November; 69(11): 6833–6840. doi: 10.1128/AEM.69.11.6833-6840.2003
PMCID:
PMC262281
Abstract Full Text PDF–1.3M
Long-Term Succession of Structure and Diversity of a Biofilm Formed in a Model Drinking Water Distribution System
Adam C. Martiny, Thomas M. Jørgensen, Hans-Jørgen Albrechtsen, Erik Arvin, Søren Molin
Appl Environ Microbiol. 2003 November; 69(11): 6899–6907. doi: 10.1128/AEM.69.11.6899-6907.2003
PMCID:
PMC262284
Abstract Full Text PDF–1.0M
Influence of Storage on Monodispersed Cells of Mycobacterium terrae Used for Quantitative Carrier Test prEN 14563
Eva Woelk, Peter Goroncy-Bermes, Wolfgang Sand
Appl Environ Microbiol. 2003 November; 69(11): 6932–6934. doi: 10.1128/AEM.69.11.6932-6934.2003
PMCID:
PMC262272
Abstract Full Text PDF–673K
Mycobacterium xenopi and Drinking Water Biofilms
M. Dailloux, M. Albert, C. Laurain, S. Andolfatto, A. Lozniewski, P. Hartemann, L. Mathieu
Appl Environ Microbiol. 2003 November; 69(11): 6946–6948. doi: 10.1128/AEM.69.11.6946-6948.2003
PMCID:
PMC262275
Abstract Full Text PDF–63K
Environmental Microbiology and Biodegradation
Glycolytic Breakdown of Sulfoquinovose in Bacteria: a Missing Link in the Sulfur Cycle
Alexander B. Roy, Michael J. E. Hewlins, Andrew J. Ellis, John L. Harwood, Graham F. White
Appl Environ Microbiol. 2003 November; 69(11): 6434–6441. doi: 10.1128/AEM.69.11.6434-6441.2003
PMCID:
PMC262304
Abstract Full Text PDF–135K
Diffusional Properties of Methanogenic Granular Sludge: 1H NMR Characterization
Piet N. L. Lens, Rakel Gastesi, Frank Vergeldt, Adriaan C. van Aelst, Antonio G. Pisabarro, Henk Van As
Appl Environ Microbiol. 2003 November; 69(11): 6644–6649. doi: 10.1128/AEM.69.11.6644-6649.2003
PMCID:
PMC262254
Abstract Full Text PDF–389K
Microbial Ecology
A New Bacteroides Conjugative Transposon That Carries an ermB Gene
Anamika Gupta, Hera Vlamakis, Nadja Shoemaker, Abigail A. Salyers
Appl Environ Microbiol. 2003 November; 69(11): 6455–6463. doi: 10.1128/AEM.69.11.6455-6463.2003
PMCID:
PMC262298
Abstract Full Text PDF–735K
Fingerprinting Microbial Assemblages from the Oxic/Anoxic Chemocline of the Black Sea
Costantino Vetriani, Hiep V. Tran, Lee J. Kerkhof
Appl Environ Microbiol. 2003 November; 69(11): 6481–6488. doi: 10.1128/AEM.69.11.6481-6488.2003
PMCID:
PMC262261
Abstract Full Text PDF–272K
Members of a Readily Enriched β-Proteobacterial Clade Are Common in Surface Waters of a Humic Lake
Ulrike Burkert, Falk Warnecke, Dieter Babenzien, Elke Zwirnmann, Jakob Pernthaler
Appl Environ Microbiol. 2003 November; 69(11): 6550–6559. doi: 10.1128/AEM.69.11.6550-6559.2003
PMCID:
PMC262289
Abstract Full Text PDF–238K
Population Structure of Alexandrium (Dinophyceae) Cyst Formation-Promoting Bacteria in Hiroshima Bay, Japan
Masao Adachi, Tsukasa Kanno, Ryo Okamoto, Shigeru Itakura, Mineo Yamaguchi, Toshitaka Nishijima
Appl Environ Microbiol. 2003 November; 69(11): 6560–6568. doi: 10.1128/AEM.69.11.6560-6568.2003
PMCID:
PMC262264
Abstract Full Text PDF–925K
Diversity and Abundance of Uncultured Cytophaga-Like Bacteria in the Delaware Estuary
David L. Kirchman, Liying Yu, Matthew T. Cottrell
Appl Environ Microbiol. 2003 November; 69(11): 6587–6596. doi: 10.1128/AEM.69.11.6587-6596.2003
PMCID:
PMC262274
Abstract Full Text PDF–170K
Diversity and Structure of Bacterial Communities in Arctic versus Antarctic Pack Ice
Robin Brinkmeyer, Katrin Knittel, Jutta Jürgens, Horst Weyland, Rudolf Amann, Elisabeth Helmke
Appl Environ Microbiol. 2003 November; 69(11): 6610–6619. doi: 10.1128/AEM.69.11.6610-6619.2003
PMCID:
PMC262250
Abstract Full Text PDF–140K
High-Resolution Differentiation of Cyanobacteria by Using rRNA-Internal Transcribed Spacer Denaturing Gradient Gel Electrophoresis
Ingmar Janse, Marion Meima, W. Edwin A. Kardinaal, Gabriel Zwart
Appl Environ Microbiol. 2003 November; 69(11): 6634–6643. doi: 10.1128/AEM.69.11.6634-6643.2003
PMCID:
PMC262283
Abstract Full Text PDF–866K
Dynamics of Bacterial and Fungal Communities on Decaying Salt Marsh Grass
Alison Buchan, Steven Y. Newell, Melissa Butler, Erin J. Biers, James T. Hollibaugh , Mary Ann Moran
Appl Environ Microbiol. 2003 November; 69(11): 6676–6687. doi: 10.1128/AEM.69.11.6676-6687.2003
PMCID:
PMC262310
Abstract Full Text PDF–844K
Diversity and Activity of Methanotrophic Bacteria in Different Upland Soils
Claudia Knief, André Lipski, Peter F. Dunfield
Appl Environ Microbiol. 2003 November; 69(11): 6703–6714. doi: 10.1128/AEM.69.11.6703-6714.2003
PMCID:
PMC262299
Abstract Full Text PDF–736K
Application of Real-Time PCR for Quantification of Microcystin Genotypes in a Population of the Toxic Cyanobacterium Microcystis sp.
Rainer Kurmayer, Thomas Kutzenberger
Appl Environ Microbiol. 2003 November; 69(11): 6723–6730. doi: 10.1128/AEM.69.11.6723-6730.2003
PMCID:
PMC262317
Abstract Full Text PDF–919K
Microbial Community Dynamics Associated with Rhizosphere Carbon Flow
Jessica L. Butler, Mark A. Williams, Peter J. Bottomley, David D. Myrold
Appl Environ Microbiol. 2003 November; 69(11): 6793–6800. doi: 10.1128/AEM.69.11.6793-6800.2003
PMCID:
PMC262268
Abstract Full Text PDF–456K
Design and Evaluation of PCR Primers for Analysis of Bacterial Populations in Wine by Denaturing Gradient Gel Electrophoresis
Isabel Lopez, Fernanda Ruiz-Larrea, Luca Cocolin, Erica Orr, Trevor Phister, Megan Marshall, Jean VanderGheynst, David A. Mills
Appl Environ Microbiol. 2003 November; 69(11): 6801–6807. doi: 10.1128/AEM.69.11.6801-6807.2003
PMCID:
PMC262258
Abstract Full Text PDF–841K
Ecology of Uncultivated Oscillospira Species in the Rumen of Cattle, Sheep, and Reindeer as Assessed by Microscopy and Molecular Approaches
Roderick I. Mackie, Rustam I. Aminov, Wenping Hu, Athol V. Klieve, Diane Ouwerkerk, Monica A. Sundset, Yoichi Kamagata
Appl Environ Microbiol. 2003 November; 69(11): 6808–6815. doi: 10.1128/AEM.69.11.6808-6815.2003
PMCID:
PMC262257
Abstract Full Text PDF–1.0M
Growth of Vibrio cholerae O1 in Red Tide Waters off California
Rosa R. Mouriño-Pérez, Alexandra Z. Worden, Farooq Azam
Appl Environ Microbiol. 2003 November; 69(11): 6923–6931. doi: 10.1128/AEM.69.11.6923-6931.2003
PMCID:
PMC262290
Abstract Full Text PDF–2.0M
Isolation and Identification of Photobacterium phosphoreum from an Unexpected Niche: Migrating Salmon
K. J. Budsberg, C. F. Wimpee, J. F. Braddock
Appl Environ Microbiol. 2003 November; 69(11): 6938–6942. doi: 10.1128/AEM.69.11.6938-6942.2003
PMCID:
PMC262280
Abstract Full Text PDF–100K
Agrobacterium Bioassay Strain for Ultrasensitive Detection of N-Acylhomoserine Lactone-Type Quorum-Sensing Molecules: Detection of Autoinducers in Mesorhizobium huakuii
Jun Zhu, Yunrong Chai, Zengtao Zhong, Shunpeng Li, Stephen C. Winans
Appl Environ Microbiol. 2003 November; 69(11): 6949–6953. doi: 10.1128/AEM.69.11.6949-6953.2003
PMCID:
PMC262303
Abstract Full Text PDF–332K
Geomicrobiology
Anaerobic Ammonium Oxidation Measured in Sediments along the Thames Estuary, United Kingdom
Mark Trimmer, Joanna C. Nicholls, Bruno Deflandre
Appl Environ Microbiol. 2003 November; 69(11): 6447–6454. doi: 10.1128/AEM.69.11.6447-6454.2003
PMCID:
PMC262292
Abstract Full Text PDF–363K
Food Microbiology
Degradation of Cross-Linked and Non-Cross-Linked Arabinoxylans by the Intestinal Microbiota in Children
Mark J. Hopkins, Hans N. Englyst, Sandra Macfarlane, Elizabeth Furrie, George T. Macfarlane, Andrew J. McBain
Appl Environ Microbiol. 2003 November; 69(11): 6354–6360. doi: 10.1128/AEM.69.11.6354-6360.2003
PMCID:
PMC262271
Abstract Full Text PDF–176K
Multilocus Sequence Typing for Comparison of Veterinary and Human Isolates of Campylobacter jejuni
Georgina Manning, Christopher G. Dowson, Mary C. Bagnall, If H. Ahmed, Malcolm West, Diane G. Newell
Appl Environ Microbiol. 2003 November; 69(11): 6370–6379. doi: 10.1128/AEM.69.11.6370-6379.2003
PMCID:
PMC262249
Abstract Full Text PDF–119K
Rapid Identification of Listeria Species by Using Restriction Fragment Length Polymorphism of PCR-Amplified 23S rRNA Gene Fragments
Delphine Paillard, Véronique Dubois, Robert Duran, Fany Nathier, Catherine Guittet, Pierre Caumette, Claudine Quentin
Appl Environ Microbiol. 2003 November; 69(11): 6386–6392. doi: 10.1128/AEM.69.11.6386-6392.2003
PMCID:
PMC262260
Abstract Full Text PDF–348K
Assessment of Photodynamic Destruction of Escherichia coli O157:H7 and Listeria monocytogenes by Using ATP Bioluminescence
N. A. Romanova, L. Y. Brovko, L. Moore, E. Pometun, A. P. Savitsky, N. N. Ugarova, M. W. Griffiths
Appl Environ Microbiol. 2003 November; 69(11): 6393–6398. doi: 10.1128/AEM.69.11.6393-6398.2003
PMCID:
PMC262251
Abstract Full Text PDF–114K
Induction and Resuscitation of Viable but Nonculturable Salmonella enterica Serovar Typhimurium DT104†
A. R. Gupte, C. L. E. de Rezende, S. W. Joseph
Appl Environ Microbiol. 2003 November; 69(11): 6669–6675. doi: 10.1128/AEM.69.11.6669-6675.2003
PMCID:
PMC262293
Abstract Full Text PDF–1.0M
Binding of Pediocin PA-1 with Anionic Lipid Induces Model Membrane Destabilization
Hélène Gaussier, Thierry Lefèvre, Muriel Subirade
Appl Environ Microbiol. 2003 November; 69(11): 6777–6784. doi: 10.1128/AEM.69.11.6777-6784.2003
PMCID:
PMC262285
Abstract Full Text PDF–153K
Analysis, Characterization, and Loci of the tuf Genes in Lactobacillus and Bifidobacterium Species and Their Direct Application for Species Identification
Marco Ventura, Carlos Canchaya, Valèrie Meylan, Todd R. Klaenhammer, Ralf Zink
Appl Environ Microbiol. 2003 November; 69(11): 6908–6922. doi: 10.1128/AEM.69.11.6908-6922.2003
PMCID:
PMC262312
Abstract Full Text PDF–1.5M
Plant Microbiology
Low-Temperature Isolation of Disease-Suppressive Bacteria and Characterization of a Distinctive Group of Pseudomonads
P. Maria Johansson, Sandra A. I. Wright
Appl Environ Microbiol. 2003 November; 69(11): 6464–6474. doi: 10.1128/AEM.69.11.6464-6474.2003
PMCID:
PMC262323
Abstract Full Text PDF–563K
Development and Application of a dapB-Based In Vivo Expression Technology System To Study Colonization of Rice by the Endophytic Nitrogen-Fixing Bacterium Pseudomonas stutzeri A15
Hans Rediers, Victoria Bonnecarrère, Paul B. Rainey, Kelly Hamonts, Jos Vanderleyden, René De Mot
Appl Environ Microbiol. 2003 November; 69(11): 6864–6874. doi: 10.1128/AEM.69.11.6864-6874.2003
PMCID:
PMC262291
Abstract Full Text PDF–1.0M
Invertebrate Microbiology
Physicochemical Conditions and Microbial Activities in the Highly Alkaline Gut of the Humus-Feeding Larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae)
Thorsten Lemke, Ulrich Stingl, Markus Egert, Michael W. Friedrich, Andreas Brune
Appl Environ Microbiol. 2003 November; 69(11): 6650–6658. doi: 10.1128/AEM.69.11.6650-6658.2003
PMCID:
PMC262302
Abstract Full Text PDF–584K
Microbial Community Structure in Midgut and Hindgut of the Humus-Feeding Larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae)
Markus Egert, Bianca Wagner, Thorsten Lemke, Andreas Brune, Michael W. Friedrich
Appl Environ Microbiol. 2003 November; 69(11): 6659–6668. doi: 10.1128/AEM.69.11.6659-6668.2003
PMCID:
PMC262301
Abstract Full Text PDF–363K
Environmental Acquisition of Thiotrophic Endosymbionts by Deep-Sea Mussels of the Genus Bathymodiolus
Yong-Jin Won, Steven J. Hallam, Gregory D. O'Mullan, Irvin L. Pan, Kurt R. Buck, Robert C. Vrijenhoek
Appl Environ Microbiol. 2003 November; 69(11): 6785–6792. doi: 10.1128/AEM.69.11.6785-6792.2003
PMCID:
PMC262266
Abstract Full Text PDF–977K
Comparative Genomics of Insect-Symbiotic Bacteria: Influence of Host Environment on Microbial Genome Composition
Rita V. M. Rio, Cedric Lefevre, Abdelaziz Heddi, Serap Aksoy
Appl Environ Microbiol. 2003 November; 69(11): 6825–6832. doi: 10.1128/AEM.69.11.6825-6832.2003
PMCID:
PMC262273
Abstract Full Text PDF–1.8M
Methods
Development and Validation of a Nested-PCR-Denaturing Gradient Gel Electrophoresis Method for Taxonomic Characterization of Bifidobacterial Communities
R. Temmerman, L. Masco, T. Vanhoutte, G. Huys, J. Swings
Appl Environ Microbiol. 2003 November; 69(11): 6380–6385. doi: 10.1128/AEM.69.11.6380-6385.2003
PMCID:
PMC262296
Abstract Full Text PDF–608K
Power Analysis for Real-Time PCR Quantification of Genes in Activated Sludge and Analysis of the Variability Introduced by DNA Extraction
Hebe M. Dionisi, Gerda Harms, Alice C. Layton, Igrid R. Gregory, Jack Parker, Shawn A. Hawkins, Kevin G. Robinson, Gary S. Sayler
Appl Environ Microbiol. 2003 November; 69(11): 6597–6604. doi: 10.1128/AEM.69.11.6597-6604.2003
PMCID:
PMC262253
Abstract Full Text PDF–125K
Sampling Natural Viral Communities from Soil for Culture-Independent Analyses
Kurt E. Williamson, K. Eric Wommack, Mark Radosevich
Appl Environ Microbiol. 2003 November; 69(11): 6628–6633. doi: 10.1128/AEM.69.11.6628-6633.2003
PMCID:
PMC262263
Abstract Full Text PDF–274K
Detection and Identification of Lactobacillus Species in Crops of Broilers of Different Ages by Using PCR-Denaturing Gradient Gel Electrophoresis and Amplified Ribosomal DNA Restriction Analysis
Le Luo Guan, Karen E. Hagen, Gerald W. Tannock, Doug R. Korver, Gaylene M. Fasenko, Gwen E. Allison
Appl Environ Microbiol. 2003 November; 69(11): 6750–6757. doi: 10.1128/AEM.69.11.6750-6757.2003
PMCID:
PMC262300
Abstract Full Text PDF–1.0M
New Method Using Sedimentation and Immunomagnetic Separation for Isolation and Enumeration of Cryptosporidium parvum Oocysts and Giardia lamblia cysts
Jaime Massanet-Nicolau
Appl Environ Microbiol. 2003 November; 69(11): 6758–6761. doi: 10.1128/AEM.69.11.6758-6761.2003
PMCID:
PMC262248
Abstract Full Text PDF–92K
Web-Based Phylogenetic Assignment Tool for Analysis of Terminal Restriction Fragment Length Polymorphism Profiles of Microbial Communities
Angela D. Kent, Dan J. Smith, Barbara J. Benson, Eric W. Triplett
Appl Environ Microbiol. 2003 November; 69(11): 6768–6776. doi: 10.1128/AEM.69.11.6768-6776.2003
PMCID:
PMC262325
Abstract Full Text PDF–254K
Protistan Grazing Analysis by Flow Cytometry Using Prey Labeled by In Vivo Expression of Fluorescent Proteins
Yutao Fu, Charles O'Kelly, Michael Sieracki, Daniel L. Distel
Appl Environ Microbiol. 2003 November; 69(11): 6848–6855. doi: 10.1128/AEM.69.11.6848-6855.2003
PMCID:
PMC262319
Abstract Full Text PDF–526K
Methodology of Protistan Discovery: from rRNA Detection to Quality Scanning Electron Microscope Images†
Thorsten Stoeck, William H. Fowle, Slava S. Epstein
Appl Environ Microbiol. 2003 November; 69(11): 6856–6863. doi: 10.1128/AEM.69.11.6856-6863.2003
PMCID:
PMC262282
Abstract Full Text PDF–2.3M
The Isotope Array, a New Tool That Employs Substrate-Mediated Labeling of rRNA for Determination of Microbial Community Structure and Function
Justyna Adamczyk, Martin Hesselsoe, Niels Iversen, Matthias Horn, Angelika Lehner, Per Halkjaer Nielsen, Michael Schloter, Peter Roslev, Michael Wagner
Appl Environ Microbiol. 2003 November; 69(11): 6875–6887. doi: 10.1128/AEM.69.11.6875-6887.2003
PMCID:
PMC262286
Abstract Full Text PDF–2.3M
Erratum
Microbial Ecology of an Extreme Acidic Environment, the Tinto River
E. González-Toril, E. Llobet-Brossa, E. O. Casamayor, R. Amann, R. Amils
Appl Environ Microbiol. 2003 November; 69(11): 6959. doi: 10.1128/AEM.69.11.6959.2003
Corrects:
Appl Environ Microbiol. 2003 August; 69(8): 4853–4865.
PMCID:
PMC262326
Correction PDF–45K Original Article
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