BMC Bioinformatics Volume 13(Suppl 3); 2012

|archive

Volume 13(Suppl 3); 2012

Proceedings

Learning pair-wise gene functional similarity by multiplex gene expression maps

Li An, Haibin Ling, Zoran Obradovic, Desmond J Smith, Vasileios Megalooikonomou

BMC Bioinformatics. 2012; 13(Suppl 3): S1. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S1

PMCID:: PMC3375633

Abstract Full Text PDF–2.7M Supplementary Material

Metabolic network alignment in large scale by network compression

Ferhat Ay, Michael Dang, Tamer Kahveci

BMC Bioinformatics. 2012; 13(Suppl 3): S2. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S2

PMCID:: PMC3402922

Abstract Full Text PDF–1.4M

Algorithms for optimizing cross-overs in DNA shuffling

Lu He, Alan M Friedman, Chris Bailey-Kellogg

BMC Bioinformatics. 2012; 13(Suppl 3): S3. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S3

PMCID:: PMC3333841

Abstract Full Text PDF–2.0M

Combining automated peak tracking in SAR by NMR with structure-based backbone assignment from ¹⁵N-NOESY

Richard Jang, Xin Gao, Ming Li

BMC Bioinformatics. 2012; 13(Suppl 3): S4. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S4

PMCID:: PMC3402924

Abstract Full Text PDF–1.7M

Predicting folding pathways between RNA conformational structures guided by RNA stacks

Yuan Li, Shaojie Zhang

BMC Bioinformatics. 2012; 13(Suppl 3): S5. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S5

PMCID:: PMC3402921

Abstract Full Text PDF–1.7M Supplementary Material

Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution

Adriana Muñoz, David Sankoff

BMC Bioinformatics. 2012; 13(Suppl 3): S6. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S6

PMCID:: PMC3402925

Abstract Full Text PDF–936K

Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems

R Mitchell Parry, John H Phan, May D Wang

BMC Bioinformatics. 2012; 13(Suppl 3): S7. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S7

PMCID:: PMC3485616

Abstract Full Text PDF–3.3M Supplementary Material

Ab initio detection of fuzzy amino acid tandem repeats in protein sequences

Marco Pellegrini, Maria Elena Renda, Alessio Vecchio

BMC Bioinformatics. 2012; 13(Suppl 3): S8. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S8

PMCID:: PMC3402919

Abstract Full Text PDF–628K Supplementary Material

Sensitive detection of pathway perturbations in cancers

Corban G Rivera, Brett M Tyler, TM Murali

BMC Bioinformatics. 2012; 13(Suppl 3): S9. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S9

PMCID:: PMC3471354

Abstract Full Text PDF–1003K

FUSE: a profit maximization approach for functional summarization of biological networks

Boon-Siew Seah, Sourav S Bhowmick, C Forbes Dewey, Jr, Hanry Yu

BMC Bioinformatics. 2012; 13(Suppl 3): S10. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S10

PMCID:: PMC3402926

Abstract Full Text PDF–2.3M

Scalable global alignment for multiple biological networks

Yu-Keng Shih, Srinivasan Parthasarathy

BMC Bioinformatics. 2012; 13(Suppl 3): S11. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S11

PMCID:: PMC3311098

Abstract Full Text PDF–1.4M

Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy

Yanni Sun, Osama Aljawad, Jikai Lei, Alex Liu

BMC Bioinformatics. 2012; 13(Suppl 3): S12. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S12

PMCID:: PMC3311100

Abstract Full Text PDF–1.6M

Comparative analysis and visualization of multiple collinear genomes

Jeremy R Wang, Fernando Pardo-Manuel de Villena, Leonard McMillan

BMC Bioinformatics. 2012; 13(Suppl 3): S13. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S13

PMCID:: PMC3311102

Abstract Full Text PDF–3.9M

Efficient path-based computations on pedigree graphs with compact encodings

Lei Yang, En Cheng, Z Meral Özsoyoğlu

BMC Bioinformatics. 2012; 13(Suppl 3): S14. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S14

PMCID:: PMC3311099

Abstract Full Text PDF–2.9M

A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters

Youngik Yang, Kenneth Nephew, Sun Kim

BMC Bioinformatics. 2012; 13(Suppl 3): S15. Published online 2012 March 21. doi: 10.1186/1471-2105-13-S3-S15

PMCID:: PMC3311103

Abstract Full Text PDF–1.1M Supplementary Material

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