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Volume 76(19);  October 2010
Biotechnology
Heterologous Expression and Extracellular Secretion of Cellulolytic Enzymes by Zymomonas mobilis
Jeffrey G. Linger, William S. Adney, Al Darzins
Appl Environ Microbiol. 2010 October; 76(19): 6360–6369. Published online 2010 August 6. doi: 10.1128/AEM.00230-10
PMCID:
PMC2950452
Abstract Full Text PDF–1.9M
Optimization of Protease Secretion in Bacillus subtilis and Bacillus licheniformis by Screening of Homologous and Heterologous Signal Peptides
Christian Degering, Thorsten Eggert, Michael Puls, Johannes Bongaerts, Stefan Evers, Karl-Heinz Maurer, Karl-Erich Jaeger
Appl Environ Microbiol. 2010 October; 76(19): 6370–6376. Published online 2010 August 13. doi: 10.1128/AEM.01146-10
PMCID:
PMC2950444
Abstract Full Text PDF–780K
Boosting Autofermentation Rates and Product Yields with Sodium Stress Cycling: Application to Production of Renewable Fuels by Cyanobacteria
Damian Carrieri, Dariya Momot, Ian A. Brasg, Gennady Ananyev, Oliver Lenz, Donald A. Bryant, G. Charles Dismukes
Appl Environ Microbiol. 2010 October; 76(19): 6455–6462. Published online 2010 August 6. doi: 10.1128/AEM.00975-10
PMCID:
PMC2950447
Abstract Full Text PDF–824K Supplementary Material
Deletion of Genes Encoding Cytochrome Oxidases and Quinol Monooxygenase Blocks the Aerobic-Anaerobic Shift in Escherichia coli K-12 MG1655
Vasiliy A. Portnoy, David A. Scott, Nathan E. Lewis, Yekaterina Tarasova, Andrei L. Osterman, Bernhard Ø. Palsson
Appl Environ Microbiol. 2010 October; 76(19): 6529–6540. Published online 2010 August 13. doi: 10.1128/AEM.01178-10
PMCID:
PMC2950451
Abstract Full Text PDF–2.2M Supplementary Material
Novel Glycoside Hydrolases Identified by Screening a Chinese Holstein Dairy Cow Rumen-Derived Metagenome Library
Shengguo Zhao, Jiaqi Wang, Dengpan Bu, Kailang Liu, Yaxin Zhu, Zhiyang Dong, Zhongtang Yu
Appl Environ Microbiol. 2010 October; 76(19): 6701–6705. Published online 2010 August 13. doi: 10.1128/AEM.00361-10
PMCID:
PMC2950470
Abstract Full Text PDF–1.4M Supplementary Material
Physiology
Denitrification Response Patterns during the Transition to Anoxic Respiration and Posttranscriptional Effects of Suboptimal pH on Nitrogen Oxide Reductase in Paracoccus denitrificans
Linda Bergaust, Yuejian Mao, Lars R. Bakken, Åsa Frostegård
Appl Environ Microbiol. 2010 October; 76(19): 6387–6396. Published online 2010 August 13. doi: 10.1128/AEM.00608-10
Correction in:
Appl Environ Microbiol. 2010 December; 76(24): 8285.
PMCID:
PMC2950438
Abstract Full Text PDF–849K Supplementary Material Correction
Modeling the Effect of Abrupt Acid and Osmotic Shifts within the Growth Region and across Growth Boundaries on Adaptation and Growth of Listeria monocytogenes
Y. Le Marc, P. N. Skandamis, C. I. A. Belessi, S. I. Merkouri, S. M. George, A. S. Gounadaki, S. Schvartzman, K. Jordan, E. H. Drosinos, J. Baranyi
Appl Environ Microbiol. 2010 October; 76(19): 6555–6563. Published online 2010 July 30. doi: 10.1128/AEM.00847-10
PMCID:
PMC2950460
Abstract Full Text PDF–286K
Genetics and Molecular Biology
Mutation of High-Affinity Methionine Permease Contributes to Selenomethionyl Protein Production in Saccharomyces cerevisiae
Toshihiko Kitajima, Yasunori Chiba, Yoshifumi Jigami
Appl Environ Microbiol. 2010 October; 76(19): 6351–6359. Published online 2010 August 6. doi: 10.1128/AEM.01026-10
PMCID:
PMC2950440
Abstract Full Text PDF–1.3M Supplementary Material
Enhanced Production of a Plant Monoterpene by Overexpression of the 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Catalytic Domain in Saccharomyces cerevisiae
Juan Rico, Ester Pardo, Margarita Orejas
Appl Environ Microbiol. 2010 October; 76(19): 6449–6454. Published online 2010 July 30. doi: 10.1128/AEM.02987-09
PMCID:
PMC2950448
Abstract Full Text PDF–405K Supplementary Material
Differential Involvement of the Five RNA Helicases in Adaptation of Bacillus cereus ATCC 14579 to Low Growth Temperatures
Franck Pandiani, Julien Brillard, Isabelle Bornard, Caroline Michaud, Stéphanie Chamot, Christophe Nguyen-the, Véronique Broussolle
Appl Environ Microbiol. 2010 October; 76(19): 6692–6697. Published online 2010 August 13. doi: 10.1128/AEM.00782-10
PMCID:
PMC2950441
Abstract Full Text PDF–1.3M
Enzymology and Protein Engineering
Improving Biocatalyst Performance by Integrating Statistical Methods into Protein Engineering
Moran Brouk, Yuval Nov, Ayelet Fishman
Appl Environ Microbiol. 2010 October; 76(19): 6397–6403. Published online 2010 August 13. doi: 10.1128/AEM.00878-10
PMCID:
PMC2950464
Abstract Full Text PDF–322K
Design of Thermostable Beta-Propeller Phytases with Activity over a Broad Range of pHs and Their Overproduction by Pichia pastoris
José M. Viader-Salvadó, Juan A. Gallegos-López, J. Gerardo Carreón-Treviño, Miguel Castillo-Galván, Arturo Rojo-Domínguez, Martha Guerrero-Olazarán
Appl Environ Microbiol. 2010 October; 76(19): 6423–6430. Published online 2010 August 6. doi: 10.1128/AEM.00253-10
PMCID:
PMC2950461
Abstract Full Text PDF–990K
Characterization of a Cellobiohydrolase (MoCel6A) Produced by Magnaporthe oryzae
Machiko Takahashi, Hideyuki Takahashi, Yuki Nakano, Teruko Konishi, Ryohei Terauchi, Takumi Takeda
Appl Environ Microbiol. 2010 October; 76(19): 6583–6590. Published online 2010 August 13. doi: 10.1128/AEM.00618-10
PMCID:
PMC2950481
Abstract Full Text PDF–643K Supplementary Material
Mycology
Characterization of Three mnp Genes of Fomitiporia mediterranea and Report of Additional Class II Peroxidases in the Order Hymenochaetales
Ingo Morgenstern, Deborah L. Robertson, David S. Hibbett
Appl Environ Microbiol. 2010 October; 76(19): 6431–6440. Published online 2010 July 30. doi: 10.1128/AEM.00547-10
PMCID:
PMC2950472
Abstract Full Text PDF–2.2M Supplementary Material
Exploring Mechanisms of Resistance to Respiratory Inhibitors in Field Strains of Botrytis cinerea, the Causal Agent of Gray Mold
Pierre Leroux, Michel Gredt, Michaela Leroch, Anne-Sophie Walker
Appl Environ Microbiol. 2010 October; 76(19): 6615–6630. Published online 2010 August 6. doi: 10.1128/AEM.00931-10
PMCID:
PMC2950445
Abstract Full Text PDF–911K Supplementary Material
Public Health Microbiology
Bovine Norovirus: Carbohydrate Ligand, Environmental Contamination, and Potential Cross-Species Transmission via Oysters
Maha Zakhour, Haifa Maalouf, Ilaria Di Bartolo, Larissa Haugarreau, Françoise S. Le Guyader, Nathalie Ruvoën-Clouet, Jean-Claude Le Saux, Franco Maria Ruggeri, Monique Pommepuy, Jacques Le Pendu
Appl Environ Microbiol. 2010 October; 76(19): 6404–6411. Published online 2010 August 13. doi: 10.1128/AEM.00671-10
PMCID:
PMC2950446
Abstract Full Text PDF–1.5M Supplementary Material
Quantification of Enteric Viruses, Pathogen Indicators, and Salmonella Bacteria in Class B Anaerobically Digested Biosolids by Culture and Molecular Methods
Kelvin Wong, Brandon M. Onan, Irene Xagoraraki
Appl Environ Microbiol. 2010 October; 76(19): 6441–6448. Published online 2010 August 6. doi: 10.1128/AEM.02685-09
PMCID:
PMC2950467
Abstract Full Text PDF–275K
Evaluating the Growth Potential of Pathogenic Bacteria in Water
Marius Vital, David Stucki, Thomas Egli, Frederik Hammes
Appl Environ Microbiol. 2010 October; 76(19): 6477–6484. Published online 2010 August 6. doi: 10.1128/AEM.00794-10
PMCID:
PMC2950443
Abstract Full Text PDF–738K Supplementary Material
Distribution of Legionella Species from Environmental Water Sources of Public Facilities and Genetic Diversity of L. pneumophila Serogroup 1 in South Korea
Hae Kyung Lee, Jung Im Shim, Hye Eun Kim, Jae Yon Yu, Yeon Ho Kang
Appl Environ Microbiol. 2010 October; 76(19): 6547–6554. Published online 2010 August 6. doi: 10.1128/AEM.00422-10
PMCID:
PMC2950455
Abstract Full Text PDF–1.6M
Decontamination Options for Bacillus anthracis-Contaminated Drinking Water Determined from Spore Surrogate Studies
Ellen Raber, Alison Burklund
Appl Environ Microbiol. 2010 October; 76(19): 6631–6638. Published online 2010 August 13. doi: 10.1128/AEM.01136-10
PMCID:
PMC2950457
Abstract Full Text PDF–82K
Comparison of Single- and Multilocus Genetic Diversity in the Protozoan Parasites Cryptosporidium parvum and C. hominis
Giovanni Widmer, Yongsun Lee
Appl Environ Microbiol. 2010 October; 76(19): 6639–6644. Published online 2010 August 13. doi: 10.1128/AEM.01268-10
PMCID:
PMC2950454
Abstract Full Text PDF–497K
Influence of the Diversity of Bacterial Isolates from Drinking Water on Resistance of Biofilms to Disinfection
Lúcia Chaves Simões, Manuel Simões, Maria João Vieira
Appl Environ Microbiol. 2010 October; 76(19): 6673–6679. Published online 2010 August 6. doi: 10.1128/AEM.00872-10
PMCID:
PMC2950458
Abstract Full Text PDF–1.1M
Mycobacterium avium Infections of Acanthamoeba Strains: Host Strain Variability, Grazing-Acquired Infections, and Altered Dynamics of Inactivation with Monochloramine
David Berry, Matthias Horn, Chuanwu Xi, Lutgarde Raskin
Appl Environ Microbiol. 2010 October; 76(19): 6685–6688. Published online 2010 August 13. doi: 10.1128/AEM.00644-10
PMCID:
PMC2950453
Abstract Full Text PDF–153K Supplementary Material
Bar-Coded Pyrosequencing of 16S rRNA Gene Amplicons Reveals Changes in Ileal Porcine Bacterial Communities Due to High Dietary Zinc Intake
W. Vahjen, R. Pieper, J. Zentek
Appl Environ Microbiol. 2010 October; 76(19): 6689–6691. Published online 2010 August 13. doi: 10.1128/AEM.03075-09
PMCID:
PMC2950476
Abstract Full Text PDF–50K Supplementary Material
Phylogenetic Groups and Pathogenicity Island Markers in Fecal Escherichia coli Isolates from Asymptomatic Humans in China
Bin Li, Jing-yong Sun, Li-zhong Han, Xin-hong Huang, Qiang Fu, Yu-xing Ni
Appl Environ Microbiol. 2010 October; 76(19): 6698–6700. Published online 2010 August 13. doi: 10.1128/AEM.00707-10
PMCID:
PMC2950456
Abstract Full Text PDF–47K
Environmental Microbiology
Variation in pH Optima of Hydrolytic Enzyme Activities in Tropical Rain Forest Soils
Benjamin L. Turner
Appl Environ Microbiol. 2010 October; 76(19): 6485–6493. Published online 2010 August 13. doi: 10.1128/AEM.00560-10
PMCID:
PMC2950465
Abstract Full Text PDF–556K
Adaptation of Methanogenic Communities to the Cofermentation of Cattle Excreta and Olive Mill Wastes at 37°C and 55°C
Marta Goberna, Maria Gadermaier, Carlos García, Bernhard Wett, Heribert Insam
Appl Environ Microbiol. 2010 October; 76(19): 6564–6571. Published online 2010 July 30. doi: 10.1128/AEM.00961-10
PMCID:
PMC2950471
Abstract Full Text PDF–559K Supplementary Material
Polyphasic Characterization of a Thermotolerant Siderophilic Filamentous Cyanobacterium That Produces Intracellular Iron Deposits
Igor I. Brown, Donald A. Bryant, Dale Casamatta, Kathie L. Thomas-Keprta, Svetlana A. Sarkisova, Gaozhong Shen, Joel E. Graham, Eric S. Boyd, John W. Peters, Daniel H. Garrison, David S. McKay
Appl Environ Microbiol. 2010 October; 76(19): 6664–6672. Published online 2010 August 13. doi: 10.1128/AEM.00662-10
PMCID:
PMC2950469
Abstract Full Text PDF–2.1M Supplementary Material
Microbial Ecology
Correlation of Particular Bacterial PCR-Denaturing Gradient Gel Electrophoresis Patterns with Bovine Ruminal Fermentation Parameters and Feed Efficiency Traits
Emma Hernandez-Sanabria, Le Luo Guan, Laksiri A. Goonewardene, Meiju Li, Denis F. Mujibi, Paul Stothard, Stephen S. Moore, Monica C. Leon-Quintero
Appl Environ Microbiol. 2010 October; 76(19): 6338–6350. Published online 2010 August 13. doi: 10.1128/AEM.01052-10
PMCID:
PMC2950479
Abstract Full Text PDF–3.0M Supplementary Material
Identification of Novel Methane-, Ethane-, and Propane-Oxidizing Bacteria at Marine Hydrocarbon Seeps by Stable Isotope Probing
Molly C. Redmond, David L. Valentine, Alex L. Sessions
Appl Environ Microbiol. 2010 October; 76(19): 6412–6422. Published online 2010 July 30. doi: 10.1128/AEM.00271-10
PMCID:
PMC2950463
Abstract Full Text PDF–1.4M Supplementary Material
Interrelations between the Microbiotas in the Litter and in the Intestines of Commercial Broiler Chickens
Michael D. Cressman, Zhongtang Yu, Michael C. Nelson, Steven J. Moeller, Michael S. Lilburn, Henry N. Zerby
Appl Environ Microbiol. 2010 October; 76(19): 6572–6582. Published online 2010 August 6. doi: 10.1128/AEM.00180-10
PMCID:
PMC2950482
Abstract Full Text PDF–1.7M
Food Microbiology
Genotype and Antibiotic Resistance Analyses of Campylobacter Isolates from Ceca and Carcasses of Slaughtered Broiler Flocks
Simone E. Wirz, Gudrun Overesch, Peter Kuhnert, Bożena M. Korczak
Appl Environ Microbiol. 2010 October; 76(19): 6377–6386. Published online 2010 August 13. doi: 10.1128/AEM.00813-10
PMCID:
PMC2950462
Abstract Full Text PDF–974K
The Chitinolytic Activity of Listeria monocytogenes EGD Is Regulated by Carbohydrates but Also by the Virulence Regulator PrfA
M. H. Larsen, J. J. Leisner, H. Ingmer
Appl Environ Microbiol. 2010 October; 76(19): 6470–6476. Published online 2010 July 30. doi: 10.1128/AEM.00297-10
PMCID:
PMC2950439
Abstract Full Text PDF–750K Supplementary Material
Lactobacillus Strain Ecology and Persistence within Broiler Chickens Fed Different Diets: Identification of Persistent Strains
David P. Stephenson, Robert J. Moore, Gwen E. Allison
Appl Environ Microbiol. 2010 October; 76(19): 6494–6503. Published online 2010 August 6. doi: 10.1128/AEM.01137-10
PMCID:
PMC2950442
Abstract Full Text PDF–1.5M Supplementary Material
Glutamate Decarboxylase-Mediated Nisin Resistance in Listeria monocytogenes
Máire Begley, Paul D. Cotter, Colin Hill, R. Paul Ross
Appl Environ Microbiol. 2010 October; 76(19): 6541–6546. Published online 2010 August 6. doi: 10.1128/AEM.00203-10
PMCID:
PMC2950483
Abstract Full Text PDF–836K
Development and Application of a New Method for Specific and Sensitive Enumeration of Spores of Nonproteolytic Clostridium botulinum Types B, E, and F in Foods and Food Materials
Michael W. Peck, June Plowman, Clare F. Aldus, Gary M. Wyatt, Walter Penaloza Izurieta, Sandra C. Stringer, Gary C. Barker
Appl Environ Microbiol. 2010 October; 76(19): 6607–6614. Published online 2010 August 13. doi: 10.1128/AEM.01007-10
PMCID:
PMC2950478
Abstract Full Text PDF–94K
A Targeted Multilocus Genotyping Assay for Lineage, Serogroup, and Epidemic Clone Typing of Listeria monocytogenes
Todd J. Ward, Thomas Usgaard, Peter Evans
Appl Environ Microbiol. 2010 October; 76(19): 6680–6684. Published online 2010 August 13. doi: 10.1128/AEM.01008-10
PMCID:
PMC2950480
Abstract Full Text PDF–60K Supplementary Material
Methods
Development of pyrF-Based Genetic System for Targeted Gene Deletion in Clostridium thermocellum and Creation of a pta Mutant
Shital A. Tripathi, Daniel G. Olson, D. Aaron Argyros, Bethany B. Miller, Trisha F. Barrett, Daniel M. Murphy, Jesse D. McCool, Anne K. Warner, Vineet B. Rajgarhia, Lee R. Lynd, David A. Hogsett, Nicky C. Caiazza
Appl Environ Microbiol. 2010 October; 76(19): 6591–6599. Published online 2010 August 6. doi: 10.1128/AEM.01484-10
PMCID:
PMC2950449
Abstract Full Text PDF–1.0M Supplementary Material
Response of Porcine Intestinal In Vitro Organ Culture Tissues following Exposure to Lactobacillus plantarum JC1 and Salmonella enterica Serovar Typhimurium SL1344
J. W. Collins, N. G. Coldham, F. J. Salguero, W. A. Cooley, W. R. Newell, R. A. Rastall, G. R. Gibson, M. J. Woodward, R. M. La Ragione
Appl Environ Microbiol. 2010 October; 76(19): 6645–6657. Published online 2010 July 16. doi: 10.1128/AEM.03115-09
PMCID:
PMC2950466
Abstract Full Text PDF–1.5M Supplementary Material
Endopeptidase Activities of Botulinum Neurotoxin Type B Complex, Holotoxin, and Light Chain
Hai-Hong Wang, Stephen Riding, Paul Lindo, Bal Ram Singh
Appl Environ Microbiol. 2010 October; 76(19): 6658–6663. Published online 2010 August 6. doi: 10.1128/AEM.00731-10
PMCID:
PMC2950459
Abstract Full Text PDF–1.1M
Biodegradation
Functional Characterization of pGKT2, a 182-Kilobase Plasmid Containing the xplAB Genes, Which Are Involved in the Degradation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine by Gordonia sp. Strain KTR9
Karl J. Indest, Carina M. Jung, Hao-Ping Chen, Dawn Hancock, Christine Florizone, Lindsay D. Eltis, Fiona H. Crocker
Appl Environ Microbiol. 2010 October; 76(19): 6329–6337. Published online 2010 August 13. doi: 10.1128/AEM.01217-10
PMCID:
PMC2950474
Abstract Full Text PDF–585K
Anaerobic Biotransformation of High Concentrations of Chloroform by an Enrichment Culture and Two Bacterial Isolates
Huifeng Shan, Harry D. Kurtz, Jr., Nadia Mykytczuk, Jack T. Trevors, David L. Freedman
Appl Environ Microbiol. 2010 October; 76(19): 6463–6469. Published online 2010 August 6. doi: 10.1128/AEM.01191-10
PMCID:
PMC2950468
Abstract Full Text PDF–424K Supplementary Material
Effect of Pesticide Inoculation, Duration of Composting, and Degradation Time on the Content of Compost Fatty Acids, Quantified Using Two Methods
Alessandra Cardinali, Stefan Otto, Costantino Vischetti, Colin Brown, Giuseppe Zanin
Appl Environ Microbiol. 2010 October; 76(19): 6600–6606. Published online 2010 August 6. doi: 10.1128/AEM.00824-10
PMCID:
PMC2950477
Abstract Full Text PDF–895K Supplementary Material
Evolutionary and Genomic Microbiology
Evolutionary Dynamics of Insertion Sequences in Relation to the Evolutionary Histories of the Chromosome and Symbiotic Plasmid Genes of Rhizobium etli Populations
Luis Lozano, Ismael Hernández-González, Patricia Bustos, Rosa I. Santamaría, Valeria Souza, J. Peter W. Young, Guillermo Dávila, Víctor González
Appl Environ Microbiol. 2010 October; 76(19): 6504–6513. Published online 2010 July 30. doi: 10.1128/AEM.01001-10
PMCID:
PMC2950475
Abstract Full Text PDF–1.4M Supplementary Material
Transcriptomic Analysis of Escherichia coli O157:H7 and K-12 Cultures Exposed to Inorganic and Organic Acids in Stationary Phase Reveals Acidulant- and Strain-Specific Acid Tolerance Responses
Thea King, Sacha Lucchini, Jay C. D. Hinton, Kari Gobius
Appl Environ Microbiol. 2010 October; 76(19): 6514–6528. Published online 2010 August 13. doi: 10.1128/AEM.02392-09
PMCID:
PMC2950450
Abstract Full Text PDF–1.2M Supplementary Material
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