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Logo of bmcbioiBioMed Centralsearchsubmit a manuscriptregisterthis journalBMC Bioinformatics
 
Volume 11(Suppl 11);  2010
Research
Association of tissue lineage and gene expression: conservatively and differentially expressed genes define common and special functions of tissues
Yao Yu, Tao Xu, Yongtao Yu, Pei Hao, Xuan Li
BMC Bioinformatics. 2010; 11(Suppl 11): S1. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S1
PMCID:
PMC3024865
Abstract Full Text PDF–1.3M Supplementary Material
Improved protein surface comparison and application to low-resolution protein structure data
Lee Sael, Daisuke Kihara
BMC Bioinformatics. 2010; 11(Suppl 11): S2. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S2
PMCID:
PMC3024873
Abstract Full Text PDF–1.9M
Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology
Liping Jing, Michael K Ng
BMC Bioinformatics. 2010; 11(Suppl 11): S3. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S3
PMCID:
PMC3024868
Abstract Full Text PDF–1.3M
Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures
Yang Zhao, Morihiro Hayashida, Tatsuya Akutsu
BMC Bioinformatics. 2010; 11(Suppl 11): S4. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S4
PMCID:
PMC3024861
Abstract Full Text PDF–787K
TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information
Qi Liu, Yejun Tan, Tao Huang, Guohui Ding, Zhidong Tu, Lei Liu, Yixue Li, Hongyue Dai, Lu Xie
BMC Bioinformatics. 2010; 11(Suppl 11): S5. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S5
PMCID:
PMC3024863
Abstract Full Text PDF–710K Supplementary Material
Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae
Shao Li, Bo Zhang, Duo Jiang, Yingying Wei, Ningbo Zhang
BMC Bioinformatics. 2010; 11(Suppl 11): S6. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S6
PMCID:
PMC3024874
Abstract Full Text PDF–1.4M
Gene-centric association analysis for the correlation between the guanine-cytosine content levels and temperature range conditions of prokaryotic species
Hao Zheng, Hongwei Wu
BMC Bioinformatics. 2010; 11(Suppl 11): S7. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S7
PMCID:
PMC3024870
Abstract Full Text PDF–255K
RecMotif: a novel fast algorithm for weak motif discovery
He Quan Sun, Malcolm Yoke Hean Low, Wen Jing Hsu, Jagath C Rajapakse
BMC Bioinformatics. 2010; 11(Suppl 11): S8. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S8
PMCID:
PMC3024859
Abstract Full Text PDF–599K
Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution
Yixiang Shi, Yi-Xue Li, Yuan-Yuan Li
BMC Bioinformatics. 2010; 11(Suppl 11): S9. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S9
PMCID:
PMC3024867
Abstract Full Text PDF–644K Supplementary Material
Accurate HLA type inference using a weighted similarity graph
Minzhu Xie, Jing Li, Tao Jiang
BMC Bioinformatics. 2010; 11(Suppl 11): S10. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S10
PMCID:
PMC3024871
Abstract Full Text PDF–465K Supplementary Material
MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features
Jiandong Ding, Shuigeng Zhou, Jihong Guan
BMC Bioinformatics. 2010; 11(Suppl 11): S11. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S11
PMCID:
PMC3024864
Abstract Full Text PDF–814K Supplementary Material
Detection and reconstruction of tandemly organized de novo copy number variations
Dan He, Nicholas Furlotte, Eleazar Eskin
BMC Bioinformatics. 2010; 11(Suppl 11): S12. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S12
PMCID:
PMC3024866
Abstract Full Text PDF–410K
Revealing parasite influence in metabolic pathways in Apicomplexa infected patients
Tao Xu, Jie Ping, Yao Yu, Fudong Yu, Yongtao Yu, Pei Hao, Xuan Li
BMC Bioinformatics. 2010; 11(Suppl 11): S13. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S13
PMCID:
PMC3024860
Abstract Full Text PDF–528K Supplementary Material
The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment
Kang Ning, Alexey I Nesvizhskii
BMC Bioinformatics. 2010; 11(Suppl 11): S14. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S14
PMCID:
PMC3024872
Abstract Full Text PDF–342K
A novel parametric approach to mine gene regulatory relationship from microarray datasets
Wanlin Liu, Dong Li, Qijun Liu, Yunping Zhu, Fuchu He
BMC Bioinformatics. 2010; 11(Suppl 11): S15. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S15
PMCID:
PMC3024862
Abstract Full Text PDF–784K Supplementary Material
Sorting out inherent features of head-to-head gene pairs by evolutionary conservation
Yun-Qin Chen, Hui Yu, Yi-Xue Li, Yuan-Yuan Li
BMC Bioinformatics. 2010; 11(Suppl 11): S16. Published online 2010 December 14. doi: 10.1186/1471-2105-11-S11-S16
PMCID:
PMC3024869
Abstract Full Text PDF–888K Supplementary Material
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