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Volume 76(12);  June 2010
Biotechnology
Structure, Function, and Insights into the Biosynthesis of a Head-to-Head Hydrocarbon in Shewanella oneidensis Strain MR-1
David J. Sukovich, Jennifer L. Seffernick, Jack E. Richman, Kristopher A. Hunt, Jeffrey A. Gralnick, Lawrence P. Wackett
Appl Environ Microbiol. 2010 June; 76(12): 3842–3849. Published online 2010 April 23. doi: 10.1128/AEM.00433-10
PMCID:
PMC2893466
Abstract Full Text PDF–924K Supplementary Material
Widespread Head-to-Head Hydrocarbon Biosynthesis in Bacteria and Role of OleA
David J. Sukovich, Jennifer L. Seffernick, Jack E. Richman, Jeffrey A. Gralnick, Lawrence P. Wackett
Appl Environ Microbiol. 2010 June; 76(12): 3850–3862. Published online 2010 April 23. doi: 10.1128/AEM.00436-10
PMCID:
PMC2893475
Abstract Full Text PDF–1.7M Supplementary Material
TDP-l-Megosamine Biosynthesis Pathway Elucidation and Megalomicin A Production in Escherichia coli
Mariana Useglio, Salvador Peirú, Eduardo Rodríguez, Guillermo R. Labadie, John R. Carney, Hugo Gramajo
Appl Environ Microbiol. 2010 June; 76(12): 3869–3877. Published online 2010 April 23. doi: 10.1128/AEM.03083-09
PMCID:
PMC2893496
Abstract Full Text PDF–2.4M
Comparative Transcriptomic and Proteomic Profiling of Industrial Wine Yeast Strains
Debra Rossouw, Adri H. van den Dool, Dan Jacobson, Florian F. Bauer
Appl Environ Microbiol. 2010 June; 76(12): 3911–3923. Published online 2010 April 23. doi: 10.1128/AEM.00586-10
PMCID:
PMC2893464
Abstract Full Text PDF–1.0M Supplementary Material
Lactococcus lactis fabH, Encoding β-Ketoacyl-Acyl Carrier Protein Synthase, Can Be Functionally Replaced by the Plasmodium falciparum Congener
Yu Du, Jolyn E. Gisselberg, Jacob D. Johnson, Patricia J. Lee, Sean T. Prigge, Brian O. Bachmann
Appl Environ Microbiol. 2010 June; 76(12): 3959–3966. Published online 2010 April 23. doi: 10.1128/AEM.00170-10
PMCID:
PMC2893474
Abstract Full Text PDF–593K
Genetic Tool Development for a New Host for Biotechnology, the Thermotolerant Bacterium Bacillus coagulans
Ákos T. Kovács, Mariska van Hartskamp, Oscar P. Kuipers, Richard van Kranenburg
Appl Environ Microbiol. 2010 June; 76(12): 4085–4088. Published online 2010 April 16. doi: 10.1128/AEM.03060-09
PMCID:
PMC2893497
Abstract Full Text PDF–577K Supplementary Material
Characterization of a Thermostable Short-Chain Alcohol Dehydrogenase from the Hyperthermophilic Archaeon Thermococcus sibiricus
Tatiana N. Stekhanova, Andrey V. Mardanov, Ekaterina Y. Bezsudnova, Vadim M. Gumerov, Nikolai V. Ravin, Konstantin G. Skryabin, Vladimir O. Popov
Appl Environ Microbiol. 2010 June; 76(12): 4096–4098. Published online 2010 April 23. doi: 10.1128/AEM.02797-09
PMCID:
PMC2893467
Abstract Full Text PDF–113K
Physiology
Cellulosilyticum ruminicola, a Newly Described Rumen Bacterium That Possesses Redundant Fibrolytic-Protein-Encoding Genes and Degrades Lignocellulose with Multiple Carbohydrate- Borne Fibrolytic Enzymes
Shichun Cai, Jiabao Li, Fen Ze Hu, Kegui Zhang, Yuanming Luo, Benjamin Janto, Robert Boissy, Garth Ehrlich, Xiuzhu Dong
Appl Environ Microbiol. 2010 June; 76(12): 3818–3824. Published online 2010 April 16. doi: 10.1128/AEM.03124-09
PMCID:
PMC2893506
Abstract Full Text PDF–251K Supplementary Material
Ethanol-Independent Biofilm Formation by a Flor Wine Yeast Strain of Saccharomyces cerevisiae
Severino Zara, Michael K. Gross, Giacomo Zara, Marilena Budroni, Alan T. Bakalinsky
Appl Environ Microbiol. 2010 June; 76(12): 4089–4091. Published online 2010 April 30. doi: 10.1128/AEM.00111-10
PMCID:
PMC2893507
Abstract Full Text PDF–480K
Killing of Bacteria by Copper Surfaces Involves Dissolved Copper
Cristina Molteni, Helge K. Abicht, Marc Solioz
Appl Environ Microbiol. 2010 June; 76(12): 4099–4101. Published online 2010 April 23. doi: 10.1128/AEM.00424-10
PMCID:
PMC2893463
Abstract Full Text PDF–147K
Monomethylamine as a Nitrogen Source for a Nonmethylotrophic Bacterium, Agrobacterium tumefaciens
Yin Chen, Kathryn L. McAleer, J. Colin Murrell
Appl Environ Microbiol. 2010 June; 76(12): 4102–4104. Published online 2010 April 16. doi: 10.1128/AEM.00469-10
PMCID:
PMC2893479
Abstract Full Text PDF–912K Supplementary Material
Genetics and Molecular Biology
Iron-Dependent Remodeling of Fungal Metabolic Pathways Associated with Ferrichrome Biosynthesis
Alexandre Mercier, Simon Labbé
Appl Environ Microbiol. 2010 June; 76(12): 3806–3817. Published online 2010 April 30. doi: 10.1128/AEM.00659-10
PMCID:
PMC2893484
Abstract Full Text PDF–1.2M
Abolition of Biofilm Formation in Urinary Tract Escherichia coli and Klebsiella Isolates by Metal Interference through Competition for Fur
Viktoria Hancock, Malin Dahl, Per Klemm
Appl Environ Microbiol. 2010 June; 76(12): 3836–3841. Published online 2010 April 23. doi: 10.1128/AEM.00241-10
PMCID:
PMC2893501
Abstract Full Text PDF–740K
Plasmid Transduction Using Bacteriophage Φadh for Expression of CC Chemokines by Lactobacillus gasseri ADH
Leonard H. Damelin, Demetra Mavri-Damelin, Todd R. Klaenhammer, Caroline T. Tiemessen
Appl Environ Microbiol. 2010 June; 76(12): 3878–3885. Published online 2010 April 23. doi: 10.1128/AEM.00139-10
PMCID:
PMC2893477
Abstract Full Text PDF–372K
Heptahelical Receptors GprC and GprD of Aspergillus fumigatus Are Essential Regulators of Colony Growth, Hyphal Morphogenesis, and Virulence
Alexander Gehrke, Thorsten Heinekamp, Ilse D. Jacobsen, Axel A. Brakhage
Appl Environ Microbiol. 2010 June; 76(12): 3989–3998. Published online 2010 April 23. doi: 10.1128/AEM.00052-10
PMCID:
PMC2893470
Abstract Full Text PDF–930K Supplementary Material
Formation and Attachment of the Deoxysugar Moiety and Assembly of the Gene Cluster for Caprazamycin Biosynthesis
Leonard Kaysser, Emmanuel Wemakor, Stefanie Siebenberg, Jose A. Salas, Jae Kyung Sohng, Bernd Kammerer, Bertolt Gust
Appl Environ Microbiol. 2010 June; 76(12): 4008–4018. Published online 2010 April 23. doi: 10.1128/AEM.02740-09
PMCID:
PMC2893494
Abstract Full Text PDF–1.3M Supplementary Material
High-Yield Intra- and Extracellular Protein Production Using Bacillus megaterium
Simon Stammen, Britta Katrin Müller, Claudia Korneli, Rebekka Biedendieck, Martin Gamer, Ezequiel Franco-Lara, Dieter Jahn
Appl Environ Microbiol. 2010 June; 76(12): 4037–4046. Published online 2010 April 30. doi: 10.1128/AEM.00431-10
PMCID:
PMC2893505
Abstract Full Text PDF–1.0M Supplementary Material
Species-Specific Type II Restriction-Modification System of Xylella fastidiosa Temecula1
Ayumi Matsumoto, Michele M. Igo
Appl Environ Microbiol. 2010 June; 76(12): 4092–4095. Published online 2010 April 23. doi: 10.1128/AEM.03034-09
PMCID:
PMC2893502
Abstract Full Text PDF–282K
Enzymology and Protein Engineering
Contribution of a Xylan-Binding Module to the Degradation of a Complex Cellulosic Substrate by Designer Cellulosomes
Sarah Moraïs, Yoav Barak, Jonathan Caspi, Yitzhak Hadar, Raphael Lamed, Yuval Shoham, David B. Wilson, Edward A. Bayer
Appl Environ Microbiol. 2010 June; 76(12): 3787–3796. Published online 2010 April 16. doi: 10.1128/AEM.00266-10
PMCID:
PMC2893491
Abstract Full Text PDF–743K
Purification and Characterization of OmcZ, an Outer-Surface, Octaheme c-Type Cytochrome Essential for Optimal Current Production by Geobacter sulfurreducens
Kengo Inoue, Xinlei Qian, Leonor Morgado, Byoung-Chan Kim, Tünde Mester, Mounir Izallalen, Carlos A. Salgueiro, Derek R. Lovley
Appl Environ Microbiol. 2010 June; 76(12): 3999–4007. Published online 2010 April 16. doi: 10.1128/AEM.00027-10
PMCID:
PMC2893489
Abstract Full Text PDF–2.2M Supplementary Material
The Aminolysis Reaction of Streptomyces S9 Aminopeptidase Promotes the Synthesis of Diverse Prolyl Dipeptides
Jiro Arima, Masazumi Morimoto, Hirokazu Usuki, Nobuhiro Mori, Tadashi Hatanaka
Appl Environ Microbiol. 2010 June; 76(12): 4109–4112. Published online 2010 April 23. doi: 10.1128/AEM.00577-10
PMCID:
PMC2893465
Abstract Full Text PDF–1.3M Supplementary Material
Mycology
An Old Yellow Enzyme Gene Controls the Branch Point between Aspergillus fumigatus and Claviceps purpurea Ergot Alkaloid Pathways
Christine M. Coyle, Johnathan Z. Cheng, Sarah E. O'Connor, Daniel G. Panaccione
Appl Environ Microbiol. 2010 June; 76(12): 3898–3903. Published online 2010 April 30. doi: 10.1128/AEM.02914-09
PMCID:
PMC2893504
Abstract Full Text PDF–560K
Diverse Bacteria Inhabit Living Hyphae of Phylogenetically Diverse Fungal Endophytes
Michele T. Hoffman, A. Elizabeth Arnold
Appl Environ Microbiol. 2010 June; 76(12): 4063–4075. Published online 2010 April 30. doi: 10.1128/AEM.02928-09
PMCID:
PMC2893488
Abstract Full Text PDF–2.7M Supplementary Material
Public Health Microbiology
Role of Absolute Humidity in the Inactivation of Influenza Viruses on Stainless Steel Surfaces at Elevated Temperatures
James McDevitt, Stephen Rudnick, Melvin First, John Spengler
Appl Environ Microbiol. 2010 June; 76(12): 3943–3947. Published online 2010 April 30. doi: 10.1128/AEM.02674-09
PMCID:
PMC2893471
Abstract Full Text PDF–109K
Oral Bacteria as Potential Probiotics for the Pharyngeal Mucosa
Simone Guglielmetti, Valentina Taverniti, Mario Minuzzo, Stefania Arioli, Milda Stuknyte, Matti Karp, Diego Mora
Appl Environ Microbiol. 2010 June; 76(12): 3948–3958. Published online 2010 April 23. doi: 10.1128/AEM.00109-10
PMCID:
PMC2893495
Abstract Full Text PDF–1.0M
“Candidatus Anadelfobacter veles” and “Candidatus Cyrtobacter comes,” Two New Rickettsiales Species Hosted by the Protist Ciliate Euplotes harpa (Ciliophora, Spirotrichea)
Claudia Vannini, Filippo Ferrantini, Karl-Heinz Schleifer, Wolfgang Ludwig, Franco Verni, Giulio Petroni
Appl Environ Microbiol. 2010 June; 76(12): 4047–4054. Published online 2010 April 30. doi: 10.1128/AEM.03105-09
PMCID:
PMC2893493
Abstract Full Text PDF–2.4M
Caenorhabditis elegans as an Alternative Model Host for Legionella pneumophila, and Protective Effects of Bifidobacterium infantis
Tomomi Komura, Chikako Yasui, Hiroshi Miyamoto, Yoshikazu Nishikawa
Appl Environ Microbiol. 2010 June; 76(12): 4105–4108. Published online 2010 April 23. doi: 10.1128/AEM.03021-09
PMCID:
PMC2893503
Abstract Full Text PDF–220K
Molecular Detection and Characterization of Aichi Viruses in Sewage-Polluted Waters of Venezuela
Ana Alcalá, Esmeralda Vizzi, Jesús Rodríguez-Díaz, José L. Zambrano, Walter Betancourt, Ferdinando Liprandi
Appl Environ Microbiol. 2010 June; 76(12): 4113–4115. Published online 2010 April 23. doi: 10.1128/AEM.00501-10
PMCID:
PMC2893485
Abstract Full Text PDF–99K
Hollow-Fiber Ultrafiltration and PCR Detection of Human-Associated Genetic Markers from Various Types of Surface Water in Florida
Stephaney D. Leskinen, Miriam Brownell, Daniel V. Lim, Valerie J. Harwood
Appl Environ Microbiol. 2010 June; 76(12): 4116–4117. Published online 2010 April 30. doi: 10.1128/AEM.00025-10
PMCID:
PMC2893472
Abstract Full Text PDF–41K
Genetic Detection of Extended-Spectrum β-Lactamase-Containing Escherichia coli Isolates from Birds of Prey from Serra da Estrela Natural Reserve in Portugal
Luís Pinto, Hajer Radhouani, Céline Coelho, Paulo Martins da Costa, Roméo Simões, Ricardo M. L. Brandão, Carmen Torres, Gilberto Igrejas, Patrícia Poeta
Appl Environ Microbiol. 2010 June; 76(12): 4118–4120. Published online 2010 April 23. doi: 10.1128/AEM.02761-09
PMCID:
PMC2893492
Abstract Full Text PDF–53K
Environmental Microbiology
TaqMan Real-Time PCR Assays To Assess Arbuscular Mycorrhizal Responses to Field Manipulation of Grassland Biodiversity: Effects of Soil Characteristics, Plant Species Richness, and Functional Traits
Stephan König, Tesfaye Wubet, Carsten F. Dormann, Stefan Hempel, Carsten Renker, François Buscot
Appl Environ Microbiol. 2010 June; 76(12): 3765–3775. Published online 2010 April 23. doi: 10.1128/AEM.02951-09
PMCID:
PMC2893483
Abstract Full Text PDF–1.1M Supplementary Material
Analysis of the Fine-Scale Population Structure of “Candidatus Accumulibacter phosphatis” in Enhanced Biological Phosphorus Removal Sludge, Using Fluorescence In Situ Hybridization and Flow Cytometric Sorting
Jeong Myeong Kim, Hyo Jung Lee, Sun Young Kim, Jae Jun Song, Woojun Park, Che Ok Jeon
Appl Environ Microbiol. 2010 June; 76(12): 3825–3835. Published online 2010 April 23. doi: 10.1128/AEM.00260-10
PMCID:
PMC2893498
Abstract Full Text PDF–2.1M
Microbial Ecology
Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis
Mi Zhou, Emma Hernandez-Sanabria, Le Luo Guan
Appl Environ Microbiol. 2010 June; 76(12): 3776–3786. Published online 2010 April 23. doi: 10.1128/AEM.00010-10
PMCID:
PMC2893468
Abstract Full Text PDF–2.0M Supplementary Material
Diversity of 16S rRNA Genes within Individual Prokaryotic Genomes
Anna Y. Pei, William E. Oberdorf, Carlos W. Nossa, Ankush Agarwal, Pooja Chokshi, Erika A. Gerz, Zhida Jin, Peng Lee, Liying Yang, Michael Poles, Stuart M. Brown, Steven Sotero, Todd DeSantis, Eoin Brodie, Karen Nelson, Zhiheng Pei
Appl Environ Microbiol. 2010 June; 76(12): 3886–3897. Published online 2010 April 23. doi: 10.1128/AEM.02953-09
Correction in:
Appl Environ Microbiol. 2010 August; 76(15): 5333.
PMCID:
PMC2893482
Abstract Full Text PDF–2.3M Supplementary Material Correction
Diversity of Oligotrichia and Choreotrichia Ciliates in Coastal Marine Sediments and in Overlying Plankton
Mary Doherty, Maiko Tamura, Jan A. C. Vriezen, George B. McManus, Laura A. Katz
Appl Environ Microbiol. 2010 June; 76(12): 3924–3935. Published online 2010 April 30. doi: 10.1128/AEM.01604-09
PMCID:
PMC2893510
Abstract Full Text PDF–1.7M
Low Pore Connectivity Increases Bacterial Diversity in Soil
Jennifer K. Carson, Vanesa Gonzalez-Quiñones, Daniel V. Murphy, Christoph Hinz, Jeremy A. Shaw, Deirdre B. Gleeson
Appl Environ Microbiol. 2010 June; 76(12): 3936–3942. Published online 2010 April 23. doi: 10.1128/AEM.03085-09
PMCID:
PMC2893478
Abstract Full Text PDF–800K
Geomicrobiology
Alignment of the c-Type Cytochrome OmcS along Pili of Geobacter sulfurreducens
Ching Leang, Xinlei Qian, Tünde Mester, Derek R. Lovley
Appl Environ Microbiol. 2010 June; 76(12): 4080–4084. Published online 2010 April 16. doi: 10.1128/AEM.00023-10
PMCID:
PMC2893476
Abstract Full Text PDF–1.8M Supplementary Material
Plant Microbiology
Characterization of Strains unlike Mesorhizobium loti That Nodulate Lotus spp. in Saline Soils of Granada, Spain
María J. Lorite, Socorro Muñoz, José Olivares, María J. Soto, Juan Sanjuán
Appl Environ Microbiol. 2010 June; 76(12): 4019–4026. Published online 2010 April 30. doi: 10.1128/AEM.02555-09
Correction in:
Appl Environ Microbiol. 2011 January; 77(2): 710.
PMCID:
PMC2893469
Abstract Full Text PDF–403K Supplementary Material Correction
Methods
Development of a Chip Assay and Quantitative PCR for Detecting Microcystin Synthetase E Gene Expression
Hanna Sipari, Anne Rantala-Ylinen, Jouni Jokela, Ilona Oksanen, Kaarina Sivonen
Appl Environ Microbiol. 2010 June; 76(12): 3797–3805. Published online 2010 April 16. doi: 10.1128/AEM.00452-10
PMCID:
PMC2893508
Abstract Full Text PDF–565K Supplementary Material
Comparison of Normalization Methods for Construction of Large, Multiplex Amplicon Pools for Next-Generation Sequencing
J. Kirk Harris, Jason W. Sahl, Todd A. Castoe, Brandie D. Wagner, David D. Pollock, John R. Spear
Appl Environ Microbiol. 2010 June; 76(12): 3863–3868. Published online 2010 April 23. doi: 10.1128/AEM.02585-09
PMCID:
PMC2893486
Abstract Full Text PDF–247K Supplementary Material
Multiplex Identification of Microbes
Richard W. Hyman, Robert P. St.Onge, Edward A. Allen, Molly Miranda, Ana Maria Aparicio, Marilyn Fukushima, Ronald W. Davis
Appl Environ Microbiol. 2010 June; 76(12): 3904–3910. Published online 2010 April 23. doi: 10.1128/AEM.02785-09
PMCID:
PMC2893500
Abstract Full Text PDF–1.0M Supplementary Material
Bioluminescence Imaging of Clavibacter michiganensis subsp. michiganensis Infection of Tomato Seeds and Plants
Xiulan Xu, Sally A. Miller, Fulya Baysal-Gurel, Karl-Heinz Gartemann, Rudolf Eichenlaub, Gireesh Rajashekara
Appl Environ Microbiol. 2010 June; 76(12): 3978–3988. Published online 2010 April 23. doi: 10.1128/AEM.00493-10
PMCID:
PMC2893490
Abstract Full Text PDF–2.3M
Application of Paramagnetically Tagged Molecules for Magnetic Resonance Imaging of Biofilm Mass Transport Processes
B. Ramanan, W. M. Holmes, W. T. Sloan, V. R. Phoenix
Appl Environ Microbiol. 2010 June; 76(12): 4027–4036. Published online 2010 April 30. doi: 10.1128/AEM.03016-09
PMCID:
PMC2893473
Abstract Full Text PDF–3.8M
Identification and Typing of Lactococcus lactis by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Kana Tanigawa, Hiroaki Kawabata, Koichi Watanabe
Appl Environ Microbiol. 2010 June; 76(12): 4055–4062. Published online 2010 April 16. doi: 10.1128/AEM.02698-09
PMCID:
PMC2893499
Abstract Full Text PDF–425K Supplementary Material
Evolutionary and Genomic Microbiology
Application of Multilocus Sequence Typing To Study the Genetic Structure of Megaplasmids in Medicago-Nodulating Rhizobia
Peter van Berkum, Patrick Elia, Bertrand D. Eardly
Appl Environ Microbiol. 2010 June; 76(12): 3967–3977. Published online 2010 April 23. doi: 10.1128/AEM.00251-10
PMCID:
PMC2893487
Abstract Full Text PDF–3.9M Supplementary Material
Chromosome Stability and Gene Loss in Cockroach Endosymbionts
Zakee L. Sabree, Patrick H. Degnan, Nancy A. Moran
Appl Environ Microbiol. 2010 June; 76(12): 4076–4079. Published online 2010 April 23. doi: 10.1128/AEM.00291-10
PMCID:
PMC2893480
Abstract Full Text PDF–841K Supplementary Material
Author’s Correction
Type II Diacylglycerol Acyltransferase from Claviceps purpurea with Ricinoleic Acid, a Hydroxyl Fatty Acid of Industrial Importance, as Preferred Substrate
Ioannis Mavraganis, Dauenpen Meesapyodsuk, Patricia Vrinten, Mark Smith, Xiao Qiu
Appl Environ Microbiol. 2010 June; 76(12): 4121. doi: 10.1128/AEM.00951-10
Corrects:
Appl Environ Microbiol. 2010 February; 76(4): 1135–1142.
PMCID:
PMC2893509
Correction PDF–19K Original Article
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