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Volume 63(Pt 5); mai 1, 2007
Protein Structure Communications
Obidimma C. Ezezika, Sandra Haddad, Ellen L. Neidle, Cory Momany
A general tetramerization and oligomerization scheme is proposed for BenM and other LysR-type transcriptional regulators based on two newly characterized structures of the effector-binding domain of BenM. An analysis of these structures in the light of other LysR-type structures may explain the general solubility problems associated with this protein family.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 361–368. Published online 2007 April 28. doi: 10.1107/S1744309107019185
- PMCID:
- PMC2334995
Structural Genomics Communications
Vaheh Oganesyan, Paul D. Adams, Jarmila Jancarik, Rosalind Kim, Sung-Hou Kim
Using single-wavelength anomalous dispersion data obtained from a gold-derivatized crystal, the X-ray crystal structure of the protein 067745_AQUAE from the prokaryotic organism Aquifex aeolicus has been determined to a resolution of 2.0 Å.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 369–374. Published online 2007 April 28. doi: 10.1107/S1744309107018945
- PMCID:
- PMC2335016
Crystallization Communications
Ryo Takahashi, Shota Nakamura, Takuya Yoshida, Yuji Kobayashi, Tadayasu Ohkubo
Human nicotinamide phosphoribosyltransferase has been crystallized using microseeding methods and X-ray diffraction data have been collected at 2.0 Å resolution.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 375–377. Published online 2007 April 6. doi: 10.1107/S1744309107006069
- PMCID:
- PMC2335003
Ruhu Qi, Susanne Fetzner, Aaron J. Oakley
Preliminary crystallographic data for 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase from P. putida 33/1 are reported.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 378–381. Published online 2007 April 6. doi: 10.1107/S1744309107013760
- PMCID:
- PMC2335004
Roberto A. Steiner, Ursula Frerichs-Deeken, Susanne Fetzner
Preliminary crystallographic data are reported for 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase (HOD) from A. nitroguajacolicus Rü61a.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 382–385. Published online 2007 April 6. doi: 10.1107/S174430910701353X
- PMCID:
- PMC2335005
Pojchong Chotiyarnwong, Guillaume B. Stewart-Jones, Michael J. Tarry, Wanwisa Dejnirattisai, Christian Siebold, Michael Koch, David I. Stuart, Karl Harlos, Prida Malasit, Gavin Screaton, Juthathip Mongkolsapaya, E. Yvonne Jones
Crystals of an MHC class I molecule bound to naturally occurring peptide variants from the dengue virus NS3 protein contained high levels of solvent and required optimization of cryoprotectant and dehydration protocols for each complex to yield well ordered diffraction, a process facilitated by the use of a free-mounting system.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 386–392. Published online 2007 April 6. doi: 10.1107/S1744309107013693
- PMCID:
- PMC2334998
Naoko Shimada, Bunzo Mikami, Seiya Watanabe, Keisuke Makino
l-2-Keto-3-deoxyarabonate dehydratase was overexpressed, purified and crystallized at 291 K using the hanging-drop vapour-diffusion method.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 393–395. Published online 2007 April 6. doi: 10.1107/S1744309107015102
- PMCID:
- PMC2334997
Kenji Murata, Andrew J. Fisher, Jerry L. Hedrick
The 24 kDa egg lectin of Chinook salmon (Oncorhynchus tshawytscha) was purified by affinity chromatography from salmon eggs and crystallized by the hanging-drop vapor-diffusion method using 15/4 EO/OH (pentaerythritol ethoxylate) as a precipitant.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 396–398. Published online 2007 April 6. doi: 10.1107/S1744309107015345
- PMCID:
- PMC2335001
Michael A. Joyce, Edward R. Brownie, Koto Hayakawa, Marie E. Fraser
Attempts to crystallize succinyl-CoA synthetase from the thermophile T. aquaticus were thwarted by proteolysis of the β-subunit and preferential crystallization of a truncated form. Crystals of the full-length enzyme were grown after the purification protocol was modified to include frequent additions of protease inhibitors.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 399–402. Published online 2007 April 14. doi: 10.1107/S1744309107017113
- PMCID:
- PMC2335007
Takuto Matsui, Shinsuke Nishimura, Kenichi Kijima, Yasushi Kawasaki, Fumio Tashiro, Shigetoshi Miura
Crystals of the rat histone H10 globular domain have been grown in the trigonal space group P3121 and diffracted to a resolution of 1.98 Å. Molecular-replacement solutions were identified and refinement has been started.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 403–405. Published online 2007 April 14. doi: 10.1107/S1744309107015357
- PMCID:
- PMC2334994
Bin Ren, Joëlle Kuhn, Laurence Meslet-Cladiere, Hannu Myllykallio, Rudolf Ladenstein
A RecB-like nuclease from the archaeon Pyrococcus abyssi was expressed, purified and crystallized. The crystals belong to the orthorhombic space group C2221 with a = 81.5, b = 159.8, c = 100.8 Å, and a native data set was collected to 2.65 Å resolution.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 406–408. Published online 2007 April 14. doi: 10.1107/S1744309107015278
- PMCID:
- PMC2334999
Mamta Bajaj, Hideaki Moriyama
The first crystallization of deoxyuridine triphosphate nucleotidohydrolase from plant, Arabidopsis thaliana, has been performed. An additive, taurine, was effective in producing the single crystal.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 409–411. Published online 2007 April 14. doi: 10.1107/S1744309107016004
- PMCID:
- PMC2335013
Neratur K. Lokanath, Kudigana J. Pampa, Toshimi Kamiya, Naoki Kunishima
A putative UDP-N-acetyl-d-mannosamine dehydrogenase from P. horikoshii OT3 has been crystallized in space group P21, with unit-cell parameters a = 80.28, b = 69.24, c = 83.10 Å, β = 114.4°. X-ray diffraction data have been collected to 1.80 Å resolution.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 412–414. Published online 2007 April 14. doi: 10.1107/S1744309107016685
- PMCID:
- PMC2334993
Carrie-Lynn Keiski, Patrick Yip, Howard Robinson, Lori L. Burrows, P. Lynne Howell
The cloning, expression, purification and crystallization of wild-type AlgK from P. fluorescens is described. The crystals diffract to 2.5 Å resolution.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 415–418. Published online 2007 April 14. doi: 10.1107/S1744309107016880
- PMCID:
- PMC2335008
Nicolas Soler, Dominique Fourmy, Satoko Yoshizawa
The mRNA-binding domain of E. coli selenocysteine-specific elongation factor SelB (residues 478–614; SelB-WH3/4) was overproduced in E. coli and its cognate mRNA ligand, 23 nucleotides of the SECIS RNA hairpin, was prepared by in vitro transcription. The purified SelB-WH3/4–SECIS RNA complex crystallized in space group C2 and diffracted to 2.3 Å.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 419–421. Published online 2007 April 20. doi: 10.1107/S174430910701723X
- PMCID:
- PMC2335015
Ying Peng, Feng Xu, Stephen G. Bell, Luet-Lok Wong, Zihe Rao
Palustrisredoxin reductase (RPA3782, PuR), a flavin-dependent ferredoxin reductase, is an essential component of the Class I cytochrome P450 systems in Rhodopseudomonas palustris CGA009. Crystals of PuR that diffract to 2.2 Å resolution have been obtained.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 422–425. Published online 2007 April 20. doi: 10.1107/S1744309107017411
- PMCID:
- PMC2335014
X. Lois Hermo-Parrado, Pablo Guardado-Calvo, Antonio L. Llamas-Saiz, Gavin C. Fox, Lorena Vazquez-Iglesias, José Martínez-Costas, Javier Benavente, Mark J. van Raaij
The avian reovirus double-stranded RNA-binding and core protein σA has been crystallized in space group P1, with unit-cell parameters a = 103.2, b = 129.9, c = 144.0 Å, α = 93.8, β = 105.1, γ = 98.2°. A complete data set has been collected to 2.3 Å resolution and analyzed.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 426–429. Published online 2007 April 20. doi: 10.1107/S1744309107017988
- PMCID:
- PMC2335010
E. Bartholomeus Kuettner, Thomas M. Kriegel, Antje Keim, Manfred Naumann, Norbert Sträter
Crystals of the enzyme hexokinase 1 from the yeast K. lactis (KlHxk1) suitable for X-ray analysis were obtained in various space groups.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 430–433. Published online 2007 April 20. doi: 10.1107/S1744309107018271
- PMCID:
- PMC2335009
Julia M. Richardson, David J. Finnegan, Malcolm D. Walkinshaw
Full-length Mos1 transposase has been crystallized in a complex with inverted-repeat DNA. Crystals diffract to 3.25 Å resolution and display noncrystallographic twofold symmetry.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 434–437. Published online 2007 April 20. doi: 10.1107/S1744309107019045
- PMCID:
- PMC2335011
Jhe-Le Tu, Ko-Hsin Chin, Andrew H.-J. Wang, Shan-Ho Chou
A bacterial UMP kinase from the plant pathogen X. campestris pathovar campestris has been overexpressed in E. coli, purified and crystallized in a strong magnetic field. The crystals diffracted to 2.35 Å.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 438–442. Published online 2007 April 20. doi: 10.1107/S1744309107018787
- PMCID:
- PMC2335002
Masaya Yamaguti, Nobuo N. Suzuki, Yuko Fujioka, Yoshinori Ohsumi, Fuyuhiko Inagaki
S. cerevisiae Atg10, an E2-like enzyme that mediates the conjugation reaction between Atg12 and Atg5, was crystallized and diffracted to 2.3 Å resolution.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 443–445. Published online 2007 April 21. doi: 10.1107/S1744309107017472
- PMCID:
- PMC2335012
Shankar Prasad Kanaujia, Chellamuthu Vasuki Ranjani, Jeyaraman Jeyakanthan, Masami Nishida, Yoshiaki Kitamura, Seiki Baba, Akio Ebihara, Nobutaka Shimizu, Noriko Nakagawa, Akeo Shinkai, Masaki Yamamoto, Seiki Kuramitsu, Yoshitsugu Shiro, Kanagaraj Sekar, Shigeyuki Yokoyama
The glucose dehydrogenase (GDH) protein from T. thermophilus HB8 was cloned, expressed, purified and crystallized. GDH crystals belong to space group P21 and diffract to 1.9 Å resolution.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 446–448. Published online 2007 April 28. doi: 10.1107/S1744309107014819
- PMCID:
- PMC2334996
Gert Bange, Georg Petzold, Klemens Wild, Irmgard Sinning
Preliminary crystallographic data are reported for the third SRP GTPase FlhF from Bacillus subtilis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 449–451. Published online 2007 April 28. doi: 10.1107/S1744309107020180
- PMCID:
- PMC2335006
Jaldappagari Seetharamappa, Muse Oke, Huanting Liu, Stephen A. McMahon, Kenneth A. Johnson, Lester Carter, Mark Dorward, Michal Zawadzki, Ian M. Overton, C. A. Johannes van Niekirk, Shirley Graham, Catherine H. Botting, Garry L. Taylor, Malcolm F. White, Geoffrey J. Barton, Peter J. Coote, James H. Naismith
As part of work on S. aureus, the crystallization of Sar2028, a protein that is upregulated in MRSA, is reported.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1; 63(Pt 5): 452–456. Published online 2007 April 28. doi: 10.1107/S1744309107019562
- PMCID:
- PMC2335000


