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Volume 1(Suppl 1);  2007
Proceedings
Genetic Analysis Workshop 15: gene expression analysis and approaches to detecting multiple functional loci
Heather J Cordell, Mariza de Andrade, Marie-Claude Babron, Christopher W Bartlett, Joseph Beyene, Heike Bickeböller, Robert Culverhouse, L Adrienne Cupples, E Warwick Daw, Josée Dupuis, Catherine T Falk, Saurabh Ghosh, Katrina A Goddard, Ellen L Goode, Elizabeth R Hauser, Lisa J Martin, Maria Martinez, Kari E North, Nancy L Saccone, Silke Schmidt, William Tapper, Duncan Thomas, David Tritchler, Veronica J Vieland, Ellen M Wijsman, Marsha A Wilcox, John S Witte, Qiong Yang, Andreas Ziegler, Laura Almasy, Jean W MacCluer
BMC Proc. 2007; 1(Suppl 1): S1. Published online 2007 December 18.
PMCID:
PMC2367529
Full Text PDF–196K
Data for Genetic Analysis Workshop (GAW) 15, Problem 1: genetics of gene expression variation in humans
Vivian G Cheung, Richard S Spielman
BMC Proc. 2007; 1(Suppl 1): S2. Published online 2007 December 18.
PMCID:
PMC2367458
Abstract Full Text PDF–169K
Data for Genetic Analysis Workshop (GAW) 15 Problem 2, genetic causes of rheumatoid arthritis and associated traits
Christopher I Amos, Wei Vivien Chen, Elaine Remmers, Katherine A Siminovitch, Michael F Seldin, Lindsey A Criswell, Annette T Lee, Sally John, Neil D Shephard, Jane Worthington, Francois Cornelis, Robert M Plenge, Ann B Begovich, Thomas D Dyer, Daniel L Kastner, Peter K Gregersen
BMC Proc. 2007; 1(Suppl 1): S3. Published online 2007 December 18.
PMCID:
PMC2367518
Abstract Full Text PDF–243K
An empirical evaluation of the common disease-common variant hypothesis
Gary K Chen, Eric Jorgenson, John S Witte
BMC Proc. 2007; 1(Suppl 1): S5. Published online 2007 December 18.
PMCID:
PMC2367531
Abstract Full Text PDF–194K
Comparison of tagging single-nucleotide polymorphism methods in association analyses
Ellen L Goode, Brooke L Fridley, Zhifu Sun, Elizabeth J Atkinson, Alex S Nord, Shannon K McDonnell, Gail P Jarvik, Mariza de Andrade, Susan L Slager
BMC Proc. 2007; 1(Suppl 1): S6. Published online 2007 December 18.
PMCID:
PMC2367496
Abstract Full Text PDF–822K
Identifying cis- and trans-acting single-nucleotide polymorphisms controlling lymphocyte gene expression in humans
Pingzhao Hu, Hui Lan, Wei Xu, Joseph Beyene, Celia MT Greenwood
BMC Proc. 2007; 1(Suppl 1): S7. Published online 2007 December 18.
PMCID:
PMC2367558
Abstract Full Text PDF–242K
A comparison of founder-only and all-pedigree-members genotype-expression association by regression analysis
Young Ju Suh, Hye-Soon Lee, Franak Batliwalla, Wentian Li
BMC Proc. 2007; 1(Suppl 1): S8. Published online 2007 December 18.
PMCID:
PMC2367500
Abstract Full Text PDF–268K Supplementary Material
Genetic association studies for gene expressions: permutation-based mutual information in a comparison with standard ANOVA and as a novel approach for feature selection
Silke Szymczak, Angelo Nuzzo, Christian Fuchsberger, Daniel F Schwarz, Andreas Ziegler, Riccardo Bellazzi, Bernd-Wolfgang Igl
BMC Proc. 2007; 1(Suppl 1): S9. Published online 2007 December 18.
PMCID:
PMC2359872
Abstract Full Text PDF–183K
Joint study of genetic regulators for expression traits related to breast cancer
Tian Zheng, Shuang Wang, Lei Cong, Yuejing Ding, Iuliana Ionita-Laza, Shaw-Hwa Lo
BMC Proc. 2007; 1(Suppl 1): S10. Published online 2007 December 18.
PMCID:
PMC2367474
Abstract Full Text PDF–722K
Multilocus analysis of GAW15 NARAC chromosome 18 case-control data
Sharon R Browning, Jessica Thomas
BMC Proc. 2007; 1(Suppl 1): S11. Published online 2007 December 18.
PMCID:
PMC2367534
Abstract Full Text PDF–369K
Meta-genetic association of rheumatoid arthritis and PTPN22 using PedGenie 2.1
Karen Curtin, Jathine Wong, Kristina Allen-Brady, Nicola J Camp
BMC Proc. 2007; 1(Suppl 1): S12. Published online 2007 December 18.
PMCID:
PMC2367587
Abstract Full Text PDF–234K
Constructing gene association networks for rheumatoid arthritis using the backward genotype-trait association (BGTA) algorithm
Yuejing Ding, Lei Cong, Iuliana Ionita-Laza, Shaw-Hwa Lo, Tian Zheng
BMC Proc. 2007; 1(Suppl 1): S13. Published online 2007 December 18.
PMCID:
PMC2367461
Abstract Full Text PDF–526K
Modeling of PTPN22 and HLA-DRB1 susceptibility to rheumatoid arthritis
France Gagnon, David Hajage, Sabine Plancoulaine, Sophie Tezenas du Montcel
BMC Proc. 2007; 1(Suppl 1): S14. Published online 2007 December 18.
PMCID:
PMC2367526
Abstract Full Text PDF–220K
Association mapping of susceptibility loci for rheumatoid arthritis
Tai-Yue Kuo, Winston Lau, Cheng Hu, Weihua Zhang
BMC Proc. 2007; 1(Suppl 1): S15. Published online 2007 December 18.
PMCID:
PMC2367513
Abstract Full Text PDF–264K
Pattern-based mining strategy to detect multi-locus association and gene × environment interaction
Zhong Li, Tian Zheng, Andrea Califano, Aris Floratos
BMC Proc. 2007; 1(Suppl 1): S16. Published online 2007 December 18.
PMCID:
PMC2367515
Abstract Full Text PDF–223K
Evaluating gene × gene and gene × smoking interaction in rheumatoid arthritis using candidate genes in GAW15
Ling Mei, Xiaohui Li, Kai Yang, Jinrui Cui, Belle Fang, Xiuqing Guo, Jerome I Rotter
BMC Proc. 2007; 1(Suppl 1): S17. Published online 2007 December 18.
PMCID:
PMC2367546
Abstract Full Text PDF–216K
Mapping a gene for rheumatoid arthritis on chromosome 18q21
William Tapper, Andrew Collins, Newton E Morton
BMC Proc. 2007; 1(Suppl 1): S18. Published online 2007 December 18.
PMCID:
PMC2367616
Abstract Full Text PDF–230K
Genome-wide linkage and association analysis of rheumatoid arthritis in a Canadian population
Zhi Wei, Mingyao Li
BMC Proc. 2007; 1(Suppl 1): S19. Published online 2007 December 18.
PMCID:
PMC2359870
Abstract Full Text PDF–263K
Empirically derived subgroups in rheumatoid arthritis: association with single-nucleotide polymorphisms on chromosome 6
Marsha A Wilcox, Andrew T McAfee
BMC Proc. 2007; 1(Suppl 1): S20. Published online 2007 December 18.
PMCID:
PMC2367493
Abstract Full Text PDF–230K
Application of sequential haplotype scan methods to case-control data
Zhaoxia Yu, Daniel J Schaid
BMC Proc. 2007; 1(Suppl 1): S21. Published online 2007 December 18.
PMCID:
PMC2367588
Abstract Full Text PDF–264K
Dealing with missing phase and missing data in phylogeny-based analysis
Claire Bardel, Pascal Croiseau, Emmanuelle Génin
BMC Proc. 2007; 1(Suppl 1): S22. Published online 2007 December 18.
PMCID:
PMC2367603
Abstract Full Text PDF–389K
Linkage and association analysis of GAW15 simulated data: fine-mapping of chromosome 6 region
Pimphen Charoen, Joanna M Biernacka, Heather J Cordell
BMC Proc. 2007; 1(Suppl 1): S23. Published online 2007 December 18.
PMCID:
PMC2367492
Abstract Full Text PDF–375K
Efficiency of multiple imputation to test for association in the presence of missing data
Pascal Croiseau, Claire Bardel, Emmanuelle Génin
BMC Proc. 2007; 1(Suppl 1): S24. Published online 2007 December 18.
PMCID:
PMC2367517
Abstract Full Text PDF–319K
The impact of complex informative missingness on the validity of the transmission/disequilibrium test (TDT)
Chao-Yu Guo
BMC Proc. 2007; 1(Suppl 1): S26. Published online 2007 December 18.
PMCID:
PMC2367473
Abstract Full Text PDF–211K
Density-based clustering in haplotype analysis for association mapping
Robert P Igo, Jr, Douglas Londono, Katherine Miller, Antonio R Parrado, Shannon RE Quade, Moumita Sinha, Sulgi Kim, Sungho Won, Jing Li, Katrina AB Goddard
BMC Proc. 2007; 1(Suppl 1): S27. Published online 2007 December 18.
PMCID:
PMC2367537
Abstract Full Text PDF–421K
Joint analysis of case-parents trio and unrelated case-control designs in large scale association studies
Jungnam Joo, Xin Tian, Gang Zheng, Mario Stylianou, Jing-Ping Lin, Nancy L Geller
BMC Proc. 2007; 1(Suppl 1): S28. Published online 2007 December 18.
PMCID:
PMC2367524
Abstract Full Text PDF–237K
Case-control studies with affected sibships
Karola Köhler, Melanie Sohns, Heike Bickeböller
BMC Proc. 2007; 1(Suppl 1): S29. Published online 2007 December 18.
PMCID:
PMC2367527
Abstract Full Text PDF–346K
A two-stage classification approach identifies seven susceptibility genes for a simulated complex disease
Nathan Pankratz
BMC Proc. 2007; 1(Suppl 1): S30. Published online 2007 December 18.
PMCID:
PMC2367605
Abstract Full Text PDF–395K
Comparing strategies for evaluation of candidate genes in case-control studies using family data
Xin Tian, Jungnam Joo, Colin O Wu, Jing-Ping Lin
BMC Proc. 2007; 1(Suppl 1): S31. Published online 2007 December 18.
PMCID:
PMC2367598
Abstract Full Text PDF–232K
A new transmission test for affected sib-pair families
Hongyan Xu, Varghese George
BMC Proc. 2007; 1(Suppl 1): S32. Published online 2007 December 18.
PMCID:
PMC2367567
Abstract Full Text PDF–332K
Case-control association analysis of rheumatoid arthritis with candidate genes using related cases
Yun Joo Yoo, Guimin Gao, Kui Zhang
BMC Proc. 2007; 1(Suppl 1): S33. Published online 2007 December 18.
PMCID:
PMC2367547
Abstract Full Text PDF–218K
Comparison of variable and model selection methods for genetic association studies using the GAW15 simulated data
Zhan Ye, Elizabeth J Atkinson, Brooke L Fridley, Mariza de Andrade
BMC Proc. 2007; 1(Suppl 1): S34. Published online 2007 December 18.
PMCID:
PMC2367491
Abstract Full Text PDF–207K Supplementary Material
An integrated genome-wide association analysis on rheumatoid arthritis data
Jun Zhang, Xiaofeng Zhu, Richard S Cooper
BMC Proc. 2007; 1(Suppl 1): S35. Published online 2007 December 18.
PMCID:
PMC2367523
Abstract Full Text PDF–217K
Joint linkage and association analysis for identification of potentially causal polymorphisms in GAW15 data
Joanna M Biernacka, Pimphen Charoen, Heather J Cordell
BMC Proc. 2007; 1(Suppl 1): S36. Published online 2007 December 18.
PMCID:
PMC2367610
Abstract Full Text PDF–198K
Modeling the effect of PTPN22 in rheumatoid arthritis
Mathieu Bourgey, Hervé Perdry, Françoise Clerget-Darpoux
BMC Proc. 2007; 1(Suppl 1): S37. Published online 2007 December 18.
PMCID:
PMC2367482
Abstract Full Text PDF–215K
Joint modeling of linkage and association using affected sib-pair data
Ming-Huei Chen, Jing Cui, Chao-Yu Guo, L Adrienne Cupples, Paul Van Eerdewegh, Josée Dupuis, Qiong Yang
BMC Proc. 2007; 1(Suppl 1): S38. Published online 2007 December 18.
PMCID:
PMC2367481
Abstract Full Text PDF–259K
A new score statistic to test for association given linkage in affected sibling pair-control designs
Jeanine J Houwing-Duistermaat, Hae Won Uh, Hans C van Houwelingen
BMC Proc. 2007; 1(Suppl 1): S39. Published online 2007 December 18.
PMCID:
PMC2367608
Abstract Full Text PDF–225K
Comparison of GIST and LAMP on the GAW15 simulated data
Xuemei Lou, Silke Schmidt, Elizabeth R Hauser
BMC Proc. 2007; 1(Suppl 1): S41. Published online 2007 December 18.
PMCID:
PMC2367571
Abstract Full Text PDF–219K
No evidence for multiple loci affecting rheumatoid arthritis risk on chromosome 6p21
Richard Sherva, Lingwei Sun, Joanna Biernacka, Rosalind Neuman
BMC Proc. 2007; 1(Suppl 1): S42. Published online 2007 December 18.
PMCID:
PMC2367585
Abstract Full Text PDF–213K
Linkage, case-control association, and family-based association tests for complex disorders
Brian K Suarez, Robert Culverhouse, Carol H Jin, Anthony Hinrichs
BMC Proc. 2007; 1(Suppl 1): S43. Published online 2007 December 18.
PMCID:
PMC2367550
Abstract Full Text PDF–465K
A logistic mixture model for a family-based association study
Guan Xing, Chao Xing, Qing Lu, Robert C Elston
BMC Proc. 2007; 1(Suppl 1): S44. Published online 2007 December 18.
PMCID:
PMC2359869
Abstract Full Text PDF–232K
Single-nucleotide polymorphism-gene intermixed networking reveals co-linkers connected to multiple gene expression phenotypes
Bin-Sheng Gong, Qing-Pu Zhang, Guang-Mei Zhang, Shao-Jun Zhang, Wei Zhang, Hong-Chao Lv, Fan Zhang, Sa-Li Lv, Chuan-Xing Li, Shao-Qi Rao, Xia Li
BMC Proc. 2007; 1(Suppl 1): S45. Published online 2007 December 18.
PMCID:
PMC2359868
Abstract Full Text PDF–1.5M
Linkage and association analyses of principal components in expression data
Anthony L Hinrichs, Robert Culverhouse, Carol H Jin, Brian K Suarez
BMC Proc. 2007; 1(Suppl 1): S46. Published online 2007 December 18.
PMCID:
PMC2367470
Abstract Full Text PDF–220K
Artificial neural networks for linkage analysis of quantitative gene expression phenotypes and evaluation of gene × gene interactions
Ying Liu, Weimin Duan, Justin Paschall, Nancy L Saccone
BMC Proc. 2007; 1(Suppl 1): S47. Published online 2007 December 18.
PMCID:
PMC2367483
Abstract Full Text PDF–300K
Exploration of non-hierarchical classification methods combined with linkage analysis to identify loci influencing clusters of co-regulated transcripts
Alka Malhotra, Helen C Looker, Robert L Hanson
BMC Proc. 2007; 1(Suppl 1): S48. Published online 2007 December 18.
PMCID:
PMC2367606
Abstract Full Text PDF–209K
Familial aggregation analysis of gene expressions
Shao-Qi Rao, Liang-De Xu, Guang-Mei Zhang, Xia Li, Lin Li, Gong-Qing Shen, Yang Jiang, Yue-Ying Yang, Bin-Sheng Gong, Wei Jiang, Fan Zhang, Yun Xiao, Qing K Wang
BMC Proc. 2007; 1(Suppl 1): S49. Published online 2007 December 18.
PMCID:
PMC2367533
Abstract Full Text PDF–366K
Mixture modeling of microarray gene expression data
Yang Yang, Adam P Tashman, Jung Yeon Lee, Seungtai Yoon, Wenyang Mao, Kwangmi Ahn, Wonkuk Kim, Nancy R Mendell, Derek Gordon, Stephen J Finch
BMC Proc. 2007; 1(Suppl 1): S50. Published online 2007 December 18.
PMCID:
PMC2367561
Abstract Full Text PDF–248K
Seeking gene relationships in gene expression data using support vector machine regression
Robert Yu, Kevin DeHoff, Christopher I Amos, Sanjay Shete
BMC Proc. 2007; 1(Suppl 1): S51. Published online 2007 December 18.
PMCID:
PMC2367560
Abstract Full Text PDF–715K
Mining gene networks with application to GAW15 Problem 1
Jing Hua Zhao, Jian'an Luan, M Fazil Baksh, Qihua Tan
BMC Proc. 2007; 1(Suppl 1): S52. Published online 2007 December 18.
PMCID:
PMC2367510
Abstract Full Text PDF–473K
Joint linkage and imprinting analyses of GAW15 rheumatoid arthritis and gene expression data
Xiaojun Zhou, Wei Chen, Michael D Swartz, Yue Lu, Robert Yu, Christopher I Amos, Chih-Chieh Wu, Sanjay Shete
BMC Proc. 2007; 1(Suppl 1): S53. Published online 2007 December 18.
PMCID:
PMC2367552
Abstract Full Text PDF–230K
Analyses of single marker and pairwise effects of candidate loci for rheumatoid arthritis using logistic regression and random forests
Beate Glaser, Ivan Nikolov, Daniel Chubb, Marian L Hamshere, Ricardo Segurado, Valentina Moskvina, Peter Holmans
BMC Proc. 2007; 1(Suppl 1): S54. Published online 2007 December 18.
PMCID:
PMC2367457
Abstract Full Text PDF–551K
Comparison of haplotyping methods using families and unrelated individuals on simulated rheumatoid arthritis data
Xin Li, Jing Li
BMC Proc. 2007; 1(Suppl 1): S55. Published online 2007 December 18.
PMCID:
PMC2367580
Abstract Full Text PDF–202K
Two-stage approach for identifying single-nucleotide polymorphisms associated with rheumatoid arthritis using random forests and Bayesian networks
Yan Meng, Qiong Yang, Karen T Cuenco, L Adrienne Cupples, Anita L DeStefano, Kathryn L Lunetta
BMC Proc. 2007; 1(Suppl 1): S56. Published online 2007 December 18.
PMCID:
PMC2367609
Abstract Full Text PDF–266K
Logistic regression trees for initial selection of interesting loci in case-control studies
Radoslav Z Nickolov, Valentin B Milanov
BMC Proc. 2007; 1(Suppl 1): S57. Published online 2007 December 18.
PMCID:
PMC2367512
Abstract Full Text PDF–199K
Picking single-nucleotide polymorphisms in forests
Daniel F Schwarz, Silke Szymczak, Andreas Ziegler, Inke R König
BMC Proc. 2007; 1(Suppl 1): S59. Published online 2007 December 18.
PMCID:
PMC2367487
Abstract Full Text PDF–326K
Detecting disease-causing genes by LASSO-Patternsearch algorithm
Weiliang Shi, Kristine E Lee, Grace Wahba
BMC Proc. 2007; 1(Suppl 1): S60. Published online 2007 December 18.
PMCID:
PMC2367607
Abstract Full Text PDF–214K
Modeling activation of inflammatory response system: a molecular-genetic neural network analysis
Hans H Stassen, Armin Szegedi, Christian Scharfetter
BMC Proc. 2007; 1(Suppl 1): S61. Published online 2007 December 18.
PMCID:
PMC2367555
Abstract Full Text PDF–248K
Classification of rheumatoid arthritis status with candidate gene and genome-wide single-nucleotide polymorphisms using random forests
Yan V Sun, Zhaohui Cai, Kaushal Desai, Rachael Lawrance, Richard Leff, Ansar Jawaid, Sharon LR Kardia, Huiying Yang
BMC Proc. 2007; 1(Suppl 1): S62. Published online 2007 December 18.
PMCID:
PMC2367463
Abstract Full Text PDF–528K
A two-dimensional genome scan for rheumatoid arthritis susceptibility loci
Jordana Tzenova Bell
BMC Proc. 2007; 1(Suppl 1): S63. Published online 2007 December 18.
PMCID:
PMC2367545
Abstract Full Text PDF–446K
Exploiting gene × gene interaction in linkage analysis
Yungui Huang, Christopher W Bartlett, Alberto M Segre, Jeffrey R O'Connell, LaVonne Mangin, Veronica J Vieland
BMC Proc. 2007; 1(Suppl 1): S64. Published online 2007 December 18.
PMCID:
PMC2367485
Abstract Full Text PDF–233K
Power of the 2-locus TDT for testing the interaction of two susceptibility genes
Salma Kotti, Mathieu Bourgey, Françoise Clerget-Darpoux
BMC Proc. 2007; 1(Suppl 1): S65. Published online 2007 December 18.
PMCID:
PMC2367511
Abstract Full Text PDF–273K
Comparison of affected sibling-pair linkage methods to identify gene × gene interaction in GAW15 simulated data
Emma K Larkin, Nathan J Morris, Yali Li, Nora L Nock, Catherine M Stein
BMC Proc. 2007; 1(Suppl 1): S66. Published online 2007 December 18.
PMCID:
PMC2367530
Abstract Full Text PDF–295K
Detecting epistatic interactions contributing to human gene expression using the CEPH family data
Hua Li, Guimin Gao, Jian Li, Grier P Page, Kui Zhang
BMC Proc. 2007; 1(Suppl 1): S67. Published online 2007 December 18.
PMCID:
PMC2367573
Abstract Full Text PDF–218K
Two-dimensional linkage analyses of rheumatoid arthritis
Nandita Mukhopadhyay, Indrani Halder, Samsiddhi Bhattacharjee, Daniel E Weeks
BMC Proc. 2007; 1(Suppl 1): S68. Published online 2007 December 18.
PMCID:
PMC2367460
Abstract Full Text PDF–248K
Identification of expression quantitative trait loci by the interaction analysis using genetic algorithm
Junghyun Namkung, Jin-Wu Nam, Taesung Park
BMC Proc. 2007; 1(Suppl 1): S69. Published online 2007 December 18.
PMCID:
PMC2367540
Abstract Full Text PDF–249K
Exploring epistasis in candidate genes for rheumatoid arthritis
Marylyn D Ritchie, Jacquelaine Bartlett, William S Bush, Todd L Edwards, Alison A Motsinger, Eric S Torstenson
BMC Proc. 2007; 1(Suppl 1): S70. Published online 2007 December 18.
PMCID:
PMC2367541
Abstract Full Text PDF–499K
Assessing genotype × environment interaction in linkage mapping using affected sib pairs
Yi-Shin Chen, Yen-Feng Chiu, Hui-Yi Kao, Fang-Chi Hsu
BMC Proc. 2007; 1(Suppl 1): S71. Published online 2007 December 18.
PMCID:
PMC2367488
Abstract Full Text PDF–285K
Gene × gene and gene × environment interactions for complex disorders
Robert Culverhouse, Anthony L Hinrichs, Carol H Jin, Brian K Suarez
BMC Proc. 2007; 1(Suppl 1): S72. Published online 2007 December 18.
PMCID:
PMC2367466
Abstract Full Text PDF–227K
Comparison of the power of haplotype-based versus single- and multilocus association methods for gene × environment (gene × sex) interactions and application to gene × smoking and gene × sex interactions in rheumatoid arthritis
Astrid Dempfle, Rebecca Hein, Lars Beckmann, André Scherag, Thuy Trang Nguyen, Helmut Schäfer, Jenny Chang-Claude
BMC Proc. 2007; 1(Suppl 1): S73. Published online 2007 December 18.
PMCID:
PMC2367597
Abstract Full Text PDF–251K
Power comparison of different methods to detect genetic effects and gene-environment interactions
Rémi Kazma, Marie-Hélène Dizier, Michel Guilloud-Bataille, Catherine Bonaïti-Pellié, Emmanuelle Génin
BMC Proc. 2007; 1(Suppl 1): S74. Published online 2007 December 18.
PMCID:
PMC2367459
Abstract Full Text PDF–545K
Adjusting for sex and anti-CCP levels in linkage analysis of rheumatoid arthritis
Jérémie JP Lebrec, Quinta Helmer, Iryna Nishchenko, Hans C van Houwelingen
BMC Proc. 2007; 1(Suppl 1): S75. Published online 2007 December 18.
PMCID:
PMC2367574
Abstract Full Text PDF–352K
Application of structural equation models to construct genetic networks using differentially expressed genes and single-nucleotide polymorphisms
Seungmook Lee, Mina Jhun, Eun-Kyung Lee, Taesung Park
BMC Proc. 2007; 1(Suppl 1): S76. Published online 2007 December 18.
PMCID:
PMC2367521
Abstract Full Text PDF–302K
An ordered subset approach to including covariates in the transmission disequilibrium test
Hervé Perdry, Brion S Maher, Marie-Claude Babron, Toby McHenry, Françoise Clerget-Darpoux, Mary L Marazita
BMC Proc. 2007; 1(Suppl 1): S77. Published online 2007 December 18.
PMCID:
PMC2367525
Abstract Full Text PDF–210K
Evidence of linkage to chromosome 1 for early age of onset of rheumatoid arthritis and HLA marker DRB1 genotype in NARAC data
Wei Xu, Hui Lan, Pingzhao Hu, Shelley B Bull, Celia MT Greenwood
BMC Proc. 2007; 1(Suppl 1): S78. Published online 2007 December 18.
PMCID:
PMC2367509
Abstract Full Text PDF–244K
Linkage analysis using principal components of gene expression data
Elizabeth J Atkinson, Brooke L Fridley, Ellen L Goode, Shannon K McDonnell, Wen Liu-Mares, Kari G Rabe, Zhifu Sun, Susan L Slager, Mariza de Andrade
BMC Proc. 2007; 1(Suppl 1): S79. Published online 2007 December 18.
PMCID:
PMC2367556
Abstract Full Text PDF–473K
Genetic heterogeneity and trans regulators of gene expression
Laurel A Bastone, Mary E Putt, Thomas R Ten Have, Vivian G Cheung, Richard S Spielman
BMC Proc. 2007; 1(Suppl 1): S80. Published online 2007 December 18.
PMCID:
PMC2367595
Abstract Full Text PDF–245K
Searching for master regulators of transcription in a human gene expression data set
Alfonso Buil, Alexandre Perera-Lluna, Ramon Souto, Juan M Peralta, Laura Almasy, Montserrat Vallverdu, Pere Caminal, Jose M Soria
BMC Proc. 2007; 1(Suppl 1): S81. Published online 2007 December 18.
PMCID:
PMC2367599
Abstract Full Text PDF–212K
Extracting disease risk profiles from expression data for linkage analysis: application to prostate cancer
G Bryce Christensen, Lisa A Cannon-Albright, Alun Thomas, Nicola J Camp
BMC Proc. 2007; 1(Suppl 1): S82. Published online 2007 December 18.
PMCID:
PMC2367601
Abstract Full Text PDF–533K
Semiparametric methods for genome-wide linkage analysis of human gene expression data
Guoqing Diao, DY Lin
BMC Proc. 2007; 1(Suppl 1): S83. Published online 2007 December 18.
PMCID:
PMC2367566
Abstract Full Text PDF–272K
A method dealing with a large number of correlated traits in a linkage genome scan
Tao Feng, Shuanglin Zhang, Qiuying Sha
BMC Proc. 2007; 1(Suppl 1): S84. Published online 2007 December 18.
PMCID:
PMC2367490
Abstract Full Text PDF–226K
Comparison of strategies for identification of regulatory quantitative trait loci of transcript expression traits
Nora Franceschini, Mary K Wojczynski, Harald HH Göring, Juan Manuel Peralta, Thomas D Dyer, Xia Li, Hao Li, Kari E North
BMC Proc. 2007; 1(Suppl 1): S85. Published online 2007 December 18.
PMCID:
PMC2367462
Abstract Full Text PDF–248K
The role of heritability in mapping expression quantitative trait loci
Song Huang, David Ballard, Hongyu Zhao
BMC Proc. 2007; 1(Suppl 1): S86. Published online 2007 December 18.
PMCID:
PMC2367577
Abstract Full Text PDF–451K
A genome-wide linkage study of GAW15 gene expression data
Donghui Kan, Richard Cooper, Xiaofeng Zhu
BMC Proc. 2007; 1(Suppl 1): S87. Published online 2007 December 18.
PMCID:
PMC2367464
Abstract Full Text PDF–268K
Co-regulation and multilocus determinants of gene expression in humans
Berit Kerner, Julia N Bailey, Rita M Cantor
BMC Proc. 2007; 1(Suppl 1): S88. Published online 2007 December 18.
PMCID:
PMC2367586
Abstract Full Text PDF–238K
Incorporating prior biological information in linkage studies increases power and limits multiple testing
Francesca Lantieri, Halfdan Rydbeck, Paola Griseri, Isabella Ceccherini, Marcella Devoto
BMC Proc. 2007; 1(Suppl 1): S89. Published online 2007 December 18.
PMCID:
PMC2367562
Abstract Full Text PDF–229K
Finding pathway regulators: gene set approach using peak identification algorithms
Eunjee Lee, Jung Hoon Woo, Ji Wan Park, Taesung Park
BMC Proc. 2007; 1(Suppl 1): S90. Published online 2007 December 18.
PMCID:
PMC2367538
Abstract Full Text PDF–379K
Confidence intervals for putative quantitative trait loci – development and applications of new linkage methods
Charalampos Papachristou, Mark Abney, Shili Lin
BMC Proc. 2007; 1(Suppl 1): S91. Published online 2007 December 18.
PMCID:
PMC2367503
Abstract Full Text PDF–364K
Sex, age and generation effects on genome-wide linkage analysis of gene expression in transformed lymphoblasts
Jagadish Rangrej, Joseph Beyene, Pingzhao Hu, Andrew D Paterson
BMC Proc. 2007; 1(Suppl 1): S92. Published online 2007 December 18.
PMCID:
PMC2367486
Abstract Full Text PDF–373K
Comparison of multipoint linkage analyses for quantitative traits in the CEPH data: parametric LOD scores, variance components LOD scores, and Bayes factors
Yun Ju Sung, Yanming Di, Audrey Q Fu, Joseph H Rothstein, Weiva Sieh, Liping Tong, Elizabeth A Thompson, Ellen M Wijsman
BMC Proc. 2007; 1(Suppl 1): S93. Published online 2007 December 18.
PMCID:
PMC2367516
Abstract Full Text PDF–460K
Transcription activity hot spot, is it real or an artifact?
Shuang Wang, Tian Zheng, Yuanjia Wang
BMC Proc. 2007; 1(Suppl 1): S94. Published online 2007 December 18.
PMCID:
PMC2367508
Abstract Full Text PDF–280K
Linkage studies of catechol-O-methyltransferase (COMT) and dopamine-beta-hydroxylase (DBH) cDNA expression levels
Chao Xing, Monica Torres-Caban, Tao Wang, Qing Lu, Guan Xing, Robert C Elston
BMC Proc. 2007; 1(Suppl 1): S95. Published online 2007 December 18.
PMCID:
PMC2367604
Abstract Full Text PDF–275K
Novel approach for genome scan meta-analysis of rheumatoid arthritis: a kernel-based estimation procedure
Laurent Briollais, Gilles Durrieu, Ranodya Upathilake
BMC Proc. 2007; 1(Suppl 1): S96. Published online 2007 December 18.
PMCID:
PMC2367494
Abstract Full Text PDF–464K
Comparison of genome-wide single-nucleotide polymorphism linkage analyses in Caucasian and Hispanic NARAC families
Wei V Chen, Christopher I Amos, Carol J Etzel, Sanjay Shete, Peter K Gregersen
BMC Proc. 2007; 1(Suppl 1): S97. Published online 2007 December 18.
PMCID:
PMC2367594
Abstract Full Text PDF–261K
Incorporating quantitative variables into linkage analysis using affected sib pairs
Yen-Feng Chiu, Jeng-Min Chiou, Yi-Shin Chen, Hui-Yi Kao, Fang-Chi Hsu
BMC Proc. 2007; 1(Suppl 1): S98. Published online 2007 December 18.
PMCID:
PMC2367592
Abstract Full Text PDF–305K
A nonparametric regression-based linkage scan of rheumatoid factor-IgM using sib-pair squared sums and differences
Saurabh Ghosh, P Samba Siva Rao, Gourab De, Partha P Majumder
BMC Proc. 2007; 1(Suppl 1): S99. Published online 2007 December 18.
PMCID:
PMC2359867
Abstract Full Text PDF–211K
Large-scale linkage analysis of 1302 affected relative pairs with rheumatoid arthritis
Marian L Hamshere, Ricardo Segurado, Valentina Moskvina, Ivan Nikolov, Beate Glaser, Peter A Holmans
BMC Proc. 2007; 1(Suppl 1): S100. Published online 2007 December 18.
PMCID:
PMC2367468
Abstract Full Text PDF–230K
A genome-wide ordered-subset linkage analysis for rheumatoid arthritis
Desh Deep Mandhyan, Xana Kim-Howard, Matthew Gaines, Swapan K Nath
BMC Proc. 2007; 1(Suppl 1): S101. Published online 2007 December 18.
PMCID:
PMC2367502
Abstract Full Text PDF–347K
On the choice of linkage statistics
Patricia Margaritte-Jeannin, Marie-Claude Babron, Françoise Clerget-Darpoux
BMC Proc. 2007; 1(Suppl 1): S102. Published online 2007 December 18.
PMCID:
PMC2367543
Abstract Full Text PDF–252K
One- and two-locus models for mapping rheumatoid arthritis-susceptibility genes on chromosome 6
Daniel J Schaid, Wan-Yu Lin
BMC Proc. 2007; 1(Suppl 1): S103. Published online 2007 December 18.
PMCID:
PMC2367548
Abstract Full Text PDF–214K
Combining linkage data sets for meta-analysis and mega-analysis: the GAW15 rheumatoid arthritis data set
Ricardo Segurado, Marian L Hamshere, Beate Glaser, Ivan Nikolov, Valentina Moskvina, Peter A Holmans
BMC Proc. 2007; 1(Suppl 1): S104. Published online 2007 December 18.
PMCID:
PMC2367583
Abstract Full Text PDF–214K
Genome-wide single-nucleotide polymorphism linkage analyses of quantitative rheumatoid arthritis phenotypes in Caucasian NARAC families
Kimberly E Taylor, Wei Chen, Christopher I Amos, Lindsey A Criswell
BMC Proc. 2007; 1(Suppl 1): S105. Published online 2007 December 18.
PMCID:
PMC2367581
Abstract Full Text PDF–410K
A likelihood-based procedure for obtaining confidence intervals of disease loci with general pedigree data
Shuyan Wan, Shili Lin
BMC Proc. 2007; 1(Suppl 1): S106. Published online 2007 December 18.
PMCID:
PMC2367465
Abstract Full Text PDF–276K
Linkage analysis of anti-CCP levels as dichotomized and quantitative traits using GAW15 single-nucleotide polymorphism scan of NARAC families
Xiaohong R Yang, Kimberly F Kerstann, Andrew W Bergen, Alisa M Goldstein, Lynn R Goldin
BMC Proc. 2007; 1(Suppl 1): S107. Published online 2007 December 18.
PMCID:
PMC2367471
Abstract Full Text PDF–331K
The feasibility of oligogenic combined segregation and linkage analysis in CEPH pedigrees
E Warwick Daw, Robert Yu
BMC Proc. 2007; 1(Suppl 1): S108. Published online 2007 December 18.
PMCID:
PMC2367495
Abstract Full Text PDF–218K
Application of an iterative Bayesian variable selection method in a genome-wide association study of rheumatoid arthritis
Soonil Kwon, Dai Wang, Xiuqing Guo
BMC Proc. 2007; 1(Suppl 1): S109. Published online 2007 December 18.
PMCID:
PMC2367600
Abstract Full Text PDF–298K
A Bayesian genome-wide linkage analysis of quantitative traits for rheumatoid arthritis via perfect sampling
Cheongeun Oh
BMC Proc. 2007; 1(Suppl 1): S110. Published online 2007 December 18.
PMCID:
PMC2367591
Abstract Full Text PDF–279K
Bayesian hierarchical modeling of means and covariances of gene expression data within families
Roger Pique-Regi, John Morrison, Duncan C Thomas
BMC Proc. 2007; 1(Suppl 1): S111. Published online 2007 December 18.
PMCID:
PMC2367475
Abstract Full Text PDF–923K
A Bayesian latent class analysis for whole-genome association analyses: an illustration using the GAW15 simulated rheumatoid arthritis dense scan data
Fredrick R Schumacher, Peter Kraft
BMC Proc. 2007; 1(Suppl 1): S112. Published online 2007 December 18.
PMCID:
PMC2367528
Abstract Full Text PDF–240K
The null distribution of stochastic search gene suggestion: a Bayesian approach to gene mapping
Michael D Swartz, Sanjay Shete
BMC Proc. 2007; 1(Suppl 1): S113. Published online 2007 December 18.
PMCID:
PMC2367497
Abstract Full Text PDF–233K
Model selection based on logistic regression in a highly correlated candidate gene region
Hae-Won Uh, Bart JA Mertens, Henk Jan van der Wijk, Hein Putter, Hans C van Houwelingen, Jeanine J Houwing-Duistermaat
BMC Proc. 2007; 1(Suppl 1): S114. Published online 2007 December 18.
PMCID:
PMC2367469
Abstract Full Text PDF–321K
Studying genetic determinants of natural variation in human gene expression using Bayesian ANOVA
Kevin C Cartier, Lara Miscimarra, Jean-Eudes Dazard, Yeunjoo Song, Sudha K Iyengar, J Sunil Rao
BMC Proc. 2007; 1(Suppl 1): S115. Published online 2007 December 18.
PMCID:
PMC2367590
Abstract Full Text PDF–1.2M
Rheumatoid arthritis, item response theory, Blom transformation, and mixed models
Aldi T Kraja, Jon Corbett, An Ping, Rosa S Lin, Petra A Jacobsen, Michael Crosswhite, Ingrid B Borecki, Michael A Province
BMC Proc. 2007; 1(Suppl 1): S116. Published online 2007 December 18.
PMCID:
PMC2367565
Abstract Full Text PDF–526K
Functional group-based linkage analysis of gene expression trait loci
Na Li, Baolin Wu, Peng Wei, Benhuai Xie, Yang Xie, Guanghua Xiao, Wei Pan
BMC Proc. 2007; 1(Suppl 1): S117. Published online 2007 December 18.
PMCID:
PMC2367612
Abstract Full Text PDF–469K
Modeling the complex gene × environment interplay in the simulated rheumatoid arthritis GAW15 data using latent variable structural equation modeling
Nora L Nock, Emma K Larkin, Nathan J Morris, Yali Li, Catherine M Stein
BMC Proc. 2007; 1(Suppl 1): S118. Published online 2007 December 18.
PMCID:
PMC2367478
Abstract Full Text PDF–312K
Genome-wide sparse canonical correlation of gene expression with genotypes
Elena Parkhomenko, David Tritchler, Joseph Beyene
BMC Proc. 2007; 1(Suppl 1): S119. Published online 2007 December 18.
PMCID:
PMC2367499
Abstract Full Text PDF–233K
Application of bivariate mixed counting process models to genetic analysis of rheumatoid arthritis severity
Rinku Sutradhar, Dushanthi Pinnaduwage, Shelley B Bull
BMC Proc. 2007; 1(Suppl 1): S120. Published online 2007 December 18.
PMCID:
PMC2367476
Abstract Full Text PDF–510K
Clustering and principal-components approach based on heritability for mapping multiple gene expressions
Yuanjia Wang, Yixin Fang, Shuang Wang
BMC Proc. 2007; 1(Suppl 1): S121. Published online 2007 December 18.
PMCID:
PMC2367519
Abstract Full Text PDF–390K
Penalized canonical correlation analysis to quantify the association between gene expression and DNA markers
Sandra Waaijenborg, Aeilko H Zwinderman
BMC Proc. 2007; 1(Suppl 1): S122. Published online 2007 December 18.
PMCID:
PMC2367589
Abstract Full Text PDF–361K
Association mapping via a class of haplotype-sharing statistics
Andrew S Allen, Glen A Satten
BMC Proc. 2007; 1(Suppl 1): S123. Published online 2007 December 18.
PMCID:
PMC2367563
Abstract Full Text PDF–247K
Using the maternal-fetal genotype incompatibility test to assess non-inherited maternal HLA-DRB1 antigen coding alleles as rheumatoid arthritis risk factors
Hsin-Ju Hsieh, Christina GS Palmer, Sinead Harney, Hsiu-Wen Chen, Lara Bauman, Matthew A Brown, Janet S Sinsheimer
BMC Proc. 2007; 1(Suppl 1): S124. Published online 2007 December 18.
PMCID:
PMC2367472
Abstract Full Text PDF–238K
Cladistic analysis of genotype data-application to GAW15 Problem 3
Hsuan Jung, Keyan Zhao, Paul Marjoram
BMC Proc. 2007; 1(Suppl 1): S125. Published online 2007 December 18.
PMCID:
PMC2367549
Abstract Full Text PDF–277K
Analysis of variation in NF-κB genes and expression levels of NF-κB-regulated molecules
Wen Liu-Mares, Zhifu Sun, William R Bamlet, Elizabeth J Atkinson, Brooke L Fridley, Susan L Slager, Mariza de Andrade, Ellen L Goode
BMC Proc. 2007; 1(Suppl 1): S126. Published online 2007 December 18.
PMCID:
PMC2367504
Abstract Full Text PDF–223K
Genome-wide analysis of single-locus and epistasis single-nucleotide polymorphism effects on anti-cyclic citrullinated peptide as a measure of rheumatoid arthritis
Li Ma, Daniel Dvorkin, John R Garbe, Yang Da
BMC Proc. 2007; 1(Suppl 1): S127. Published online 2007 December 18.
PMCID:
PMC2367477
Abstract Full Text PDF–587K
Comparison of measures for haplotype similarity
Vivien Marquard, Lars Beckmann, Justo L Bermejo, Christine Fischer, Jenny Chang-Claude
BMC Proc. 2007; 1(Suppl 1): S128. Published online 2007 December 18.
PMCID:
PMC2367614
Abstract Full Text PDF–354K
Association testing by haplotype-sharing methods applicable to whole-genome analysis
Ilja M Nolte, André R de Vries, Geert T Spijker, Ritsert C Jansen, Dumitru Brinza, Alexander Zelikovsky, Gerard J te Meerman
BMC Proc. 2007; 1(Suppl 1): S129. Published online 2007 December 18.
PMCID:
PMC2367507
Abstract Full Text PDF–605K
Association tests based on the principal-component analysis
Sohee Oh, Taesung Park
BMC Proc. 2007; 1(Suppl 1): S130. Published online 2007 December 18.
PMCID:
PMC2367557
Abstract Full Text PDF–260K
Association mapping through heuristic evolutionary history reconstruction-application to GAW15 Problem 3
Alexander Platt
BMC Proc. 2007; 1(Suppl 1): S131. Published online 2007 December 18.
PMCID:
PMC2367498
Abstract Full Text PDF–321K
Visualizing genotype × phenotype relationships in the GAW15 simulated data
Xuejun Qin, Silke Schmidt, Eden Martin, Elizabeth R Hauser
BMC Proc. 2007; 1(Suppl 1): S132. Published online 2007 December 18.
PMCID:
PMC2367489
Abstract Full Text PDF–702K
Fine-scale linkage disequilibrium mapping: a comparison of coalescent-based and haplotype-clustering-based methods
Sungho Won, Ritwik Sinha, Yuqun Luo
BMC Proc. 2007; 1(Suppl 1): S133. Published online 2007 December 18.
PMCID:
PMC2367559
Abstract Full Text PDF–253K
A two-step multiple-marker strategy for genome-wide association studies
Hugues Aschard, Mickaël Guedj, Florence Demenais
BMC Proc. 2007; 1(Suppl 1): S134. Published online 2007 December 18.
PMCID:
PMC2367542
Abstract Full Text PDF–275K
Two-stage strategies to detect gene × gene interactions in case-control data
Amina Barhdadi, Marie-Pierre Dubé
BMC Proc. 2007; 1(Suppl 1): S135. Published online 2007 December 18.
PMCID:
PMC2367578
Abstract Full Text PDF–256K
One-stage design is empirically more powerful than two-stage design for family-based genome-wide association studies
Rori V Rohlfs, Chelsea Taylor, Lucia Mirea, Shelley B Bull, Mary Corey, Amy D Anderson
BMC Proc. 2007; 1(Suppl 1): S137. Published online 2007 December 18.
PMCID:
PMC2367501
Abstract Full Text PDF–226K
Two-stage study designs for analyzing disease-associated covariates: linkage thresholds and case-selection strategies
Mike Schmidt, Xuejun Qin, Eden R Martin, Elizabeth R Hauser, Silke Schmidt
BMC Proc. 2007; 1(Suppl 1): S138. Published online 2007 December 18.
PMCID:
PMC2367505
Abstract Full Text PDF–213K
Two-stage analysis strategy for identifying the IgM quantitative trait locus
Tao Wang, Qing Lu, Monica Torres-Caban, Robert C Elston
BMC Proc. 2007; 1(Suppl 1): S139. Published online 2007 December 18.
PMCID:
PMC2367539
Abstract Full Text PDF–216K
Genome-wide association tests by two-stage approaches with unified analysis of families and unrelated individuals
Xuexia Wang, Zhaogong Zhang, Shuanglin Zhang, Qiuying Sha
BMC Proc. 2007; 1(Suppl 1): S140. Published online 2007 December 18.
PMCID:
PMC2367544
Abstract Full Text PDF–224K
A mixture model approach to multiple testing for the genetic analysis of gene expression
Cyril Dalmasso, Joseph Pickrell, Marianne Tuefferd, Emmanuelle Génin, Catherine Bourgain, Philippe Broët
BMC Proc. 2007; 1(Suppl 1): S141. Published online 2007 December 18.
PMCID:
PMC2367480
Abstract Full Text PDF–366K
The multiplicity problem in linkage analysis of gene expression data – the power of differentiating cis- and trans-acting regulators
Baisong Huang, Jagadish Rangrej, Andrew D Paterson, Lei Sun
BMC Proc. 2007; 1(Suppl 1): S142. Published online 2007 December 18.
PMCID:
PMC2367579
Abstract Full Text PDF–227K
Estimating the number and size of the main effects in genome-wide case-control association studies
Po-Hsiu Kuo, József Bukszár, Edwin JCG van den Oord
BMC Proc. 2007; 1(Suppl 1): S143. Published online 2007 December 18.
PMCID:
PMC2367536
Abstract Full Text PDF–238K
Rapid and robust association mapping of expression quantitative trait loci
Alex C Lam, Michael Schouten, Yurii S Aulchenko, Chris S Haley, Dirk-Jan de Koning
BMC Proc. 2007; 1(Suppl 1): S144. Published online 2007 December 18.
PMCID:
PMC2367564
Abstract Full Text PDF–335K
Statistical corrections of linkage data suggest predominantly cis regulations of gene expression
Jianxin Shi, David O Siegmund, Douglas F Levinson
BMC Proc. 2007; 1(Suppl 1): S145. Published online 2007 December 18.
PMCID:
PMC2367613
Abstract Full Text PDF–462K
Two-step intermediate fine mapping with likelihood ratio test statistics: applications to Problems 2 and 3 data of GAW15
Ritwik Sinha, Yuqun Luo
BMC Proc. 2007; 1(Suppl 1): S146. Published online 2007 December 18.
PMCID:
PMC2367514
Abstract Full Text PDF–281K
Genome-wide association studies using an adaptive two-stage analysis for a case-control design
Kijoung Song, Qing Lu, Xiwu Lin, Dawn Waterworth, Robert C Elston
BMC Proc. 2007; 1(Suppl 1): S147. Published online 2007 December 18.
PMCID:
PMC2367582
Abstract Full Text PDF–229K
Comparison of false-discovery rate for genome-wide and fine mapping regions
Meredith E Tabangin, Jessica G Woo, Chunyan Liu, Todd G Nick, Lisa J Martin
BMC Proc. 2007; 1(Suppl 1): S148. Published online 2007 December 18.
PMCID:
PMC2367535
Abstract Full Text PDF–246K
Genome-wide association tests by using block information in family data
Rui Tang, Fei Wang, Qiuying Sha, Shuanglin Zhang, Huann-Sheng Chen
BMC Proc. 2007; 1(Suppl 1): S149. Published online 2007 December 18.
PMCID:
PMC2359871
Abstract Full Text PDF–229K
Impact of normalization and filtering on linkage analysis of gene expression data
Joseph Beyene, Pingzhao Hu, Elena Parkhomenko, David Tritchler
BMC Proc. 2007; 1(Suppl 1): S150. Published online 2007 December 18.
PMCID:
PMC2367572
Abstract Full Text PDF–240K
The genetics of gene expression: comparison of linkage scans using two phenotype normalization methods
Mariza de Andrade, Elizabeth J Atkinson, Brooke L Fridley, Ellen L Goode, Shannon McDonnell, Wen Liu-Mares, Kari G Rabe, Zhifu Sun, Susan L Slager
BMC Proc. 2007; 1(Suppl 1): S151. Published online 2007 December 18.
PMCID:
PMC2367553
Abstract Full Text PDF–309K
Normalization of microarray expression data using within-pedigree pool and its effect on linkage analysis
Yoonhee Kim, Betty Q Doan, Priya Duggal, Joan E Bailey-Wilson
BMC Proc. 2007; 1(Suppl 1): S152. Published online 2007 December 18.
PMCID:
PMC2367611
Abstract Full Text PDF–560K
Impact of gene expression data pre-processing on expression quantitative trait locus mapping
Aurelie Labbe, Marie-Paule Roth, Pierre-Hugues Carmichael, Maria Martinez
BMC Proc. 2007; 1(Suppl 1): S153. Published online 2007 December 18.
PMCID:
PMC2367602
Abstract Full Text PDF–234K
Different normalization strategies for microarray gene expression traits affect the heritability estimation
Jun Ma, Zhaohui S Qin
BMC Proc. 2007; 1(Suppl 1): S154. Published online 2007 December 18.
PMCID:
PMC2367576
Abstract Full Text PDF–235K
Mapping of trans-acting regulatory factors from microarray data
Jeanette N McClintick, Yunlong Liu, Howard J Edenberg
BMC Proc. 2007; 1(Suppl 1): S155. Published online 2007 December 18.
PMCID:
PMC2367593
Abstract Full Text PDF–242K
Normalizing a large number of quantitative traits using empirical normal quantile transformation
Bo Peng, Robert K Yu, Kevin L DeHoff, Christopher I Amos
BMC Proc. 2007; 1(Suppl 1): S156. Published online 2007 December 18.
PMCID:
PMC2367615
Abstract Full Text PDF–218K
Controlling for false positive findings of trans-hubs in expression quantitative trait loci mapping
Jie Peng, Pei Wang, Hua Tang
BMC Proc. 2007; 1(Suppl 1): S157. Published online 2007 December 18.
PMCID:
PMC2367467
Abstract Full Text PDF–488K
Effects on linkage analyses of different Affymetrix expression measures as quantitative trait phenotypes
Juan Manuel Peralta, Laura Almasy
BMC Proc. 2007; 1(Suppl 1): S158. Published online 2007 December 18.
PMCID:
PMC2367575
Abstract Full Text PDF–331K
Modeling linkage disequilibrium in exact linkage computations: a comparison of first-order Markov approaches and the clustered-markers approach
Cornelis A Albers, Hilbert J Kappen
BMC Proc. 2007; 1(Suppl 1): S159. Published online 2007 December 18.
PMCID:
PMC2367570
Abstract Full Text PDF–352K
Analysis of high-density single-nucleotide polymorphism data: three novel methods that control for linkage disequilibrium between markers in a linkage analysis
Kristina Allen-Brady, Benjamin D Horne, Alka Malhotra, Craig Teerlink, Nicola J Camp, Alun Thomas
BMC Proc. 2007; 1(Suppl 1): S160. Published online 2007 December 18.
PMCID:
PMC2367532
Abstract Full Text PDF–363K
Handling linkage disequilibrium in linkage analysis using dense single-nucleotide polymorphisms
Kelly Cho, Qiong Yang, Josée Dupuis
BMC Proc. 2007; 1(Suppl 1): S161. Published online 2007 December 18.
PMCID:
PMC2367569
Abstract Full Text PDF–331K
Combining multiple family-based association studies
Hua Tang, Jie Peng, Pei Wang, Marc Coram, Li Hsu
BMC Proc. 2007; 1(Suppl 1): S162. Published online 2007 December 18.
PMCID:
PMC2367479
Abstract Full Text PDF–363K
Conditional genotype analysis: detecting secondary disease loci in linkage disequilibrium with a primary disease locus
Glenys Thomson, Ana Maria Valdes
BMC Proc. 2007; 1(Suppl 1): S163. Published online 2007 December 18.
PMCID:
PMC2367484
Abstract Full Text PDF–333K
Genome-wide association mapping using mixed-models: application to GAW15 Problem 3
Keyan Zhao, Magnus Nordborg, Paul Marjoram
BMC Proc. 2007; 1(Suppl 1): S164. Published online 2007 December 18.
PMCID:
PMC2367554
Abstract Full Text PDF–343K
Robust ranks of true associations in genome-wide case-control association studies
Gang Zheng, Jungnam Joo, Jing-Ping Lin, Mario Stylianou, Myron A Waclawiw, Nancy L Geller
BMC Proc. 2007; 1(Suppl 1): S165. Published online 2007 December 18.
PMCID:
PMC2367568
Abstract Full Text PDF–402K
Impact of marker density on the accuracy of association mapping
Weihua Zhang, Winston Lau, Cheng Hu, Tai-Yue Kuo
BMC Proc. 2007; 1(Suppl 1): S166. Published online 2007 December 18.
PMCID:
PMC2367596
Abstract Full Text PDF–206K
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