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Volume 74(20);  October 2008
Genetics and Molecular Biology
Identification and Characterization of Lactococcal-Prophage-Carried Superinfection Exclusion Genes
Jennifer Mahony, Stephen McGrath, Gerald F. Fitzgerald, Douwe van Sinderen
Appl Environ Microbiol. 2008 October; 74(20): 6206–6215. Published online 2008 August 22. doi: 10.1128/AEM.01053-08
PMCID:
PMC2570291
Abstract Full Text PDF–313K Supplementary Material
Specific DNA Binding of a Potential Transcriptional Regulator, Inosine 5′-Monophosphate Dehydrogenase-Related Protein VII, to the Promoter Region of a Methyl Coenzyme M Reductase I-Encoding Operon Retrieved from Methanothermobacter thermautotrophicus Strain ΔH
Naoya Shinzato, Miho Enoki, Hiroaki Sato, Kohei Nakamura, Toru Matsui, Yoichi Kamagata
Appl Environ Microbiol. 2008 October; 74(20): 6239–6247. Published online 2008 August 29. doi: 10.1128/AEM.02155-07
PMCID:
PMC2570296
Abstract Full Text PDF–609K
The Deep-Sea Bacterium Photobacterium profundum SS9 Utilizes Separate Flagellar Systems for Swimming and Swarming under High-Pressure Conditions
Emiley A. Eloe, Federico M. Lauro, Rudi F. Vogel, Douglas H. Bartlett
Appl Environ Microbiol. 2008 October; 74(20): 6298–6305. Published online 2008 August 22. doi: 10.1128/AEM.01316-08
PMCID:
PMC2570297
Abstract Full Text PDF–509K Supplementary Material
Growth Temperature Exerts Differential Physiological and Transcriptional Responses in Laboratory and Wine Strains of Saccharomyces cerevisiae
Francisco J. Pizarro, Michael C. Jewett, Jens Nielsen, Eduardo Agosin
Appl Environ Microbiol. 2008 October; 74(20): 6358–6368. Published online 2008 August 22. doi: 10.1128/AEM.00602-08
PMCID:
PMC2570279
Abstract Full Text PDF–687K Supplementary Material
Enzymology and Protein Engineering
Characterization of DegQVh, a Serine Protease and a Protective Immunogen from a Pathogenic Vibrio harveyi Strain
Wei-wei Zhang, Kun Sun, Shuang Cheng, Li Sun
Appl Environ Microbiol. 2008 October; 74(20): 6254–6262. Published online 2008 August 22. doi: 10.1128/AEM.00109-08
PMCID:
PMC2570273
Abstract Full Text PDF–580K Supplementary Material
Identification of Lacto-N-Biose I Phosphorylase from Vibrio vulnificus CMCP6
Masahiro Nakajima, Motomitsu Kitaoka
Appl Environ Microbiol. 2008 October; 74(20): 6333–6337. Published online 2008 August 22. doi: 10.1128/AEM.02846-07
PMCID:
PMC2570299
Abstract Full Text PDF–100K
Physiology and Biotechnology
Engineering of a Glycerol Utilization Pathway for Amino Acid Production by Corynebacterium glutamicum
Doris Rittmann, Steffen N. Lindner, Volker F. Wendisch
Appl Environ Microbiol. 2008 October; 74(20): 6216–6222. Published online 2008 August 29. doi: 10.1128/AEM.00963-08
PMCID:
PMC2570274
Abstract Full Text PDF–354K
Characterization of the Pseudomonas pseudoalcaligenes CECT5344 Cyanase, an Enzyme That Is Not Essential for Cyanide Assimilation
Víctor M. Luque-Almagro, María-J. Huertas, Lara P. Sáez, Manuel Martínez Luque-Romero, Conrado Moreno-Vivián, Francisco Castillo, M. Dolores Roldán, Rafael Blasco
Appl Environ Microbiol. 2008 October; 74(20): 6280–6288. Published online 2008 August 15. doi: 10.1128/AEM.00916-08
PMCID:
PMC2570302
Abstract Full Text PDF–625K
Mycology
Formulation of a Defined V8 Medium for Induction of Sexual Development of Cryptococcus neoformans
Cory R. Kent, Patricia Ortiz-Bermúdez, Steven S. Giles, Christina M. Hull
Appl Environ Microbiol. 2008 October; 74(20): 6248–6253. Published online 2008 September 5. doi: 10.1128/AEM.00970-08
PMCID:
PMC2570290
Abstract Full Text PDF–316K
Genetic Structure and Aggressiveness of Erysiphe necator Populations during Grapevine Powdery Mildew Epidemics
Josselin Montarry, Philippe Cartolaro, François Delmotte, Jérôme Jolivet, Laetitia Willocquet
Appl Environ Microbiol. 2008 October; 74(20): 6327–6332. Published online 2008 August 22. doi: 10.1128/AEM.01200-08
PMCID:
PMC2570294
Abstract Full Text PDF–202K
Functional Expression and Subcellular Localization of the Aflatoxin Pathway Enzyme Ver-1 Fused to Enhanced Green Fluorescent Protein
Sung-Yong Hong, John E. Linz
Appl Environ Microbiol. 2008 October; 74(20): 6385–6396. Published online 2008 August 29. doi: 10.1128/AEM.01185-08
Correction in:
Appl Environ Microbiol. 2009 February; 75(4): 1220.
PMCID:
PMC2570292
Abstract Full Text PDF–1.7M Supplementary Material Correction
In Situ Detection of Freshwater Fungi in an Alpine Stream by New Taxon-Specific Fluorescence In Situ Hybridization Probes
Christiane Baschien, Werner Manz, Thomas R. Neu, Ludmila Marvanová, Ulrich Szewzyk
Appl Environ Microbiol. 2008 October; 74(20): 6427–6436. Published online 2008 September 5. doi: 10.1128/AEM.00815-08
PMCID:
PMC2570288
Abstract Full Text PDF–877K
Public Health Microbiology
Diversity and Distribution of Commensal Fecal Escherichia coli Bacteria in Beef Cattle Administered Selected Subtherapeutic Antimicrobials in a Feedlot Setting
Ranjana Sharma, Krysty Munns, Trevor Alexander, Toby Entz, Parasto Mirzaagha, L. Jay Yanke, Michael Mulvey, Edward Topp, Tim McAllister
Appl Environ Microbiol. 2008 October; 74(20): 6178–6186. Published online 2008 August 22. doi: 10.1128/AEM.00704-08
PMCID:
PMC2570304
Abstract Full Text PDF–603K
Salmonella and Escherichia coli O157:H7 Contamination on Hides and Carcasses of Cull Cattle Presented for Slaughter in the United States: an Evaluation of Prevalence and Bacterial Loads by Immunomagnetic Separation and Direct Plating Methods
Dayna M. Brichta-Harhay, Michael N. Guerini, Terrance M. Arthur, Joseph M. Bosilevac, Norasak Kalchayanand, Steven D. Shackelford, Tommy L. Wheeler, Mohammad Koohmaraie
Appl Environ Microbiol. 2008 October; 74(20): 6289–6297. Published online 2008 August 22. doi: 10.1128/AEM.00700-08
PMCID:
PMC2570275
Abstract Full Text PDF–593K
Factors Associated with Cross-Contamination of Hides of Scottish Cattle by Escherichia coli O157
A. E. Mather, S. W. J. Reid, S. A. McEwen, H. E. Ternent, R. J. Reid-Smith, P. Boerlin, D. J. Taylor, W. B. Steele, G. J. Gunn, D. J. Mellor
Appl Environ Microbiol. 2008 October; 74(20): 6313–6319. Published online 2008 August 22. doi: 10.1128/AEM.00770-08
PMCID:
PMC2570309
Abstract Full Text PDF–118K
Early Attachment Sites for Shiga-Toxigenic Escherichia coli O157:H7 in Experimentally Inoculated Weaned Calves
Evelyn A. Dean-Nystrom, William C. Stoffregen, Brad T. Bosworth, Harley W. Moon, Joachim F. Pohlenz
Appl Environ Microbiol. 2008 October; 74(20): 6378–6384. Published online 2008 August 22. doi: 10.1128/AEM.00636-08
PMCID:
PMC2570283
Abstract Full Text PDF–1.1M
Characterization and Deposition of Respirable Large- and Small-Particle Bioaerosols
Richard J. Thomas, Daniel Webber, William Sellors, Aaron Collinge, Andrew Frost, Anthony J. Stagg, Stephen C. Bailey, Pramukh N. Jayasekera, Rosa R. Taylor, Steve Eley, Richard W. Titball
Appl Environ Microbiol. 2008 October; 74(20): 6437–6443. Published online 2008 August 22. doi: 10.1128/AEM.01194-08
PMCID:
PMC2570277
Abstract Full Text PDF–591K
Isolation and Identification of Bifidobacteriaceae from Human Saliva
David Beighton, Steven C. Gilbert, Douglas Clark, Maria Mantzourani, Mustafa al-Haboubi, Farida Ali, Elizabeth Ransome, Nicholas Hodson, Michael Fenlon, Liana Zoitopoulos, Jennifer Gallagher
Appl Environ Microbiol. 2008 October; 74(20): 6457–6460. Published online 2008 August 22. doi: 10.1128/AEM.00895-08
PMCID:
PMC2570306
Abstract Full Text PDF–236K
Microbial Ecology
Multilocus Sequence Typing and Phylogenetic Analyses of Pseudomonas aeruginosa Isolates from the Ocean
Nurul Huda Khan, Mahbuba Ahsan, Susumu Yoshizawa, Shoichi Hosoya, Akira Yokota, Kazuhiro Kogure
Appl Environ Microbiol. 2008 October; 74(20): 6194–6205. Published online 2008 August 29. doi: 10.1128/AEM.02322-07
PMCID:
PMC2570286
Abstract Full Text PDF–532K
First Cultivation and Ecological Investigation of a Bacterium Affiliated with the Candidate Phylum OP5 from Hot Springs
Koji Mori, Michinari Sunamura, Katsunori Yanagawa, Jun-ichiro Ishibashi, Youko Miyoshi, Takao Iino, Ken-ichiro Suzuki, Tetsuro Urabe
Appl Environ Microbiol. 2008 October; 74(20): 6223–6229. Published online 2008 September 5. doi: 10.1128/AEM.01351-08
PMCID:
PMC2570270
Abstract Full Text PDF–725K
Heme Uptake by Microscilla marina and Evidence for Heme Uptake Systems in the Genomes of Diverse Marine Bacteria
Brian M. Hopkinson, Kelly L. Roe, Katherine A. Barbeau
Appl Environ Microbiol. 2008 October; 74(20): 6263–6270. Published online 2008 August 29. doi: 10.1128/AEM.00964-08
PMCID:
PMC2570271
Abstract Full Text PDF–1.0M Supplementary Material
Metabolic Microenvironmental Control by Photosynthetic Biofilms under Changing Macroenvironmental Temperature and pH Conditions
Andrew Bissett, Andreas Reimer, Dirk de Beer, Fumito Shiraishi, Gernot Arp
Appl Environ Microbiol. 2008 October; 74(20): 6306–6312. Published online 2008 August 8. doi: 10.1128/AEM.00877-08
PMCID:
PMC2570272
Abstract Full Text PDF–727K Supplementary Material
Detection of Bifidobacterium animalis subsp. lactis (Bb12) in the Intestine after Feeding of Sows and Their Piglets
Gloria Solano-Aguilar, Harry Dawson, Marta Restrepo, Kate Andrews, Bryan Vinyard, Joseph F. Urban, Jr.
Appl Environ Microbiol. 2008 October; 74(20): 6338–6347. Published online 2008 August 8. doi: 10.1128/AEM.00309-08
PMCID:
PMC2570311
Abstract Full Text PDF–227K
Global Occurrence of Archaeal amoA Genes in Terrestrial Hot Springs
Chuanlun L. Zhang, Qi Ye, Zhiyong Huang, WenJun Li, Jinquan Chen, Zhaoqi Song, Weidong Zhao, Christopher Bagwell, William P. Inskeep, Christian Ross, Lei Gao, Juergen Wiegel, Christopher S. Romanek, Everett L. Shock, Brian P. Hedlund
Appl Environ Microbiol. 2008 October; 74(20): 6417–6426. Published online 2008 August 1. doi: 10.1128/AEM.00843-08
PMCID:
PMC2570307
Abstract Full Text PDF–1.3M
Comparative Molecular Analysis of Endoevaporitic Microbial Communities
Jason W. Sahl, Norman R. Pace, John R. Spear
Appl Environ Microbiol. 2008 October; 74(20): 6444–6446. Published online 2008 August 29. doi: 10.1128/AEM.00879-08
PMCID:
PMC2570308
Abstract Full Text PDF–509K Supplementary Material
Extensive Genome Rearrangements and Multiple Horizontal Gene Transfers in a Population of Pyrococcus Isolates from Vulcano Island, Italy
James R. White, Patricia Escobar-Paramo, Emmanuel F. Mongodin, Karen E. Nelson, Jocelyne DiRuggiero
Appl Environ Microbiol. 2008 October; 74(20): 6447–6451. Published online 2008 August 22. doi: 10.1128/AEM.01024-08
PMCID:
PMC2570278
Abstract Full Text PDF–366K Supplementary Material
Food Microbiology
Bacteriophages Reduce Experimental Contamination of Hard Surfaces, Tomato, Spinach, Broccoli, and Ground Beef by Escherichia coli O157:H7
Tamar Abuladze, Manrong Li, Marc Y. Menetrez, Timothy Dean, Andre Senecal, Alexander Sulakvelidze
Appl Environ Microbiol. 2008 October; 74(20): 6230–6238. Published online 2008 August 22. doi: 10.1128/AEM.01465-08
PMCID:
PMC2570303
Abstract Full Text PDF–385K
Characterization of ApuB, an Extracellular Type II Amylopullulanase from Bifidobacterium breve UCC2003
Mary O'Connell Motherway, Gerald F. Fitzgerald, Sabine Neirynck, Sinead Ryan, Lothar Steidler, Douwe van Sinderen
Appl Environ Microbiol. 2008 October; 74(20): 6271–6279. Published online 2008 August 8. doi: 10.1128/AEM.01169-08
PMCID:
PMC2570300
Abstract Full Text PDF–703K
Sources of Clostridia in Raw Milk on Farms
Marie-Claude Julien, Patrice Dion, Carole Lafrenière, Hani Antoun, Pascal Drouin
Appl Environ Microbiol. 2008 October; 74(20): 6348–6357. Published online 2008 August 29. doi: 10.1128/AEM.00913-08
PMCID:
PMC2570301
Abstract Full Text PDF–1.1M Supplementary Material
Plant Microbiology
ShmR Is Essential for Utilization of Heme as a Nutritional Iron Source in Sinorhizobium meliloti
Vanesa Amarelle, Mark R. O'Brian, Elena Fabiano
Appl Environ Microbiol. 2008 October; 74(20): 6473–6475. Published online 2008 August 29. doi: 10.1128/AEM.01590-08
PMCID:
PMC2570276
Abstract Full Text PDF–391K
Invertebrate Microbiology
Phylogenetic Characterization of Two Novel Commensal Bacteria Involved with Innate Immune Homeostasis in Drosophila melanogaster
Seong Woon Roh, Young-Do Nam, Ho-Won Chang, Kyoung-Ho Kim, Min-Soo Kim, Ji-Hwan Ryu, Sung-Hee Kim, Won-Jae Lee, Jin-Woo Bae
Appl Environ Microbiol. 2008 October; 74(20): 6171–6177. Published online 2008 August 22. doi: 10.1128/AEM.00301-08
PMCID:
PMC2570289
Abstract Full Text PDF–424K
Methods
Genetic Tools for Studying Capnocytophaga canimorsus
Manuela Mally, Guy R. Cornelis
Appl Environ Microbiol. 2008 October; 74(20): 6369–6377. Published online 2008 August 22. doi: 10.1128/AEM.01218-08
PMCID:
PMC2570293
Abstract Full Text PDF–749K
Novel Parachlamydia acanthamoebae Quantification Method Based on Coculture with Amoebae
Junji Matsuo, Yasuhiro Hayashi, Shinji Nakamura, Marie Sato, Yoshihiko Mizutani, Masahiro Asaka, Hiroyuki Yamaguchi
Appl Environ Microbiol. 2008 October; 74(20): 6397–6404. Published online 2008 August 29. doi: 10.1128/AEM.00841-08
PMCID:
PMC2570282
Abstract Full Text PDF–1.1M
TRiFLe, a Program for In Silico Terminal Restriction Fragment Length Polymorphism Analysis with User-Defined Sequence Sets
Pilar Junier, Thomas Junier, Karl-Paul Witzel
Appl Environ Microbiol. 2008 October; 74(20): 6452–6456. Published online 2008 August 29. doi: 10.1128/AEM.01394-08
PMCID:
PMC2570284
Abstract Full Text PDF–844K
Development of a Transposon Mutagenesis System in the Oral Spirochete Treponema denticola
Yu Yang, Philip E. Stewart, Xiaoguang Shi, Chunhao Li
Appl Environ Microbiol. 2008 October; 74(20): 6461–6464. Published online 2008 August 22. doi: 10.1128/AEM.01424-08
PMCID:
PMC2570287
Abstract Full Text PDF–204K
TaqMan-Based Real-Time PCR Method for Detection of Yersinia pseudotuberculosis in Food
S. Thisted Lambertz, C. Nilsson, S. Hallanvuo
Appl Environ Microbiol. 2008 October; 74(20): 6465–6469. Published online 2008 August 29. doi: 10.1128/AEM.01459-08
PMCID:
PMC2570298
Abstract Full Text PDF–97K
Gram-Negative Bacterial Lipopolysaccharide Retention by a Positively Charged New-Generation Filter
Ilaria Bononi, Veronica Balatti, Soccorso Gaeta, Mauro Tognon
Appl Environ Microbiol. 2008 October; 74(20): 6470–6472. Published online 2008 August 22. doi: 10.1128/AEM.00552-08
PMCID:
PMC2570310
Abstract Full Text PDF–199K
Biodegradation
Biodegradation of 2-Ethylhexyl Nitrate by Mycobacterium austroafricanum IFP 2173
Elodie Nicolau, Lucien Kerhoas, Martine Lettere, Yves Jouanneau, Rémy Marchal
Appl Environ Microbiol. 2008 October; 74(20): 6187–6193. Published online 2008 August 22. doi: 10.1128/AEM.01142-08
PMCID:
PMC2570280
Abstract Full Text PDF–435K
Fate of the Nitrilotriacetic Acid-Fe(III) Complex during Photodegradation and Biodegradation by Rhodococcus rhodochrous
Andrei Bunescu, Pascale Besse-Hoggan, Martine Sancelme, Gilles Mailhot, Anne-Marie Delort
Appl Environ Microbiol. 2008 October; 74(20): 6320–6326. Published online 2008 August 29. doi: 10.1128/AEM.00537-08
PMCID:
PMC2570295
Abstract Full Text PDF–479K
Identification of Critical Members in a Sulfidogenic Benzene-Degrading Consortium by DNA Stable Isotope Probing
A. R. Oka, C. D. Phelps, L. M. McGuinness, A. Mumford, L. Y. Young, L. J. Kerkhof
Appl Environ Microbiol. 2008 October; 74(20): 6476–6480. Published online 2008 August 29. doi: 10.1128/AEM.01082-08
PMCID:
PMC2570285
Abstract Full Text PDF–325K
Evolutionary and Genomic Microbiology
The Genome of Polaromonas sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology
Timothy E. Mattes, Anne K. Alexander, Paul M. Richardson, A. Christine Munk, Cliff S. Han, Paul Stothard, Nicholas V. Coleman
Appl Environ Microbiol. 2008 October; 74(20): 6405–6416. Published online 2008 August 22. doi: 10.1128/AEM.00197-08
PMCID:
PMC2570305
Abstract Full Text PDF–2.6M Supplementary Material
Letter to the Editor
Models with Insignificant Parameters
Sencer Buzrul
Appl Environ Microbiol. 2008 October; 74(20): 6481–6482. doi: 10.1128/AEM.01217-08
Includes additional comments & authors
PMCID:
PMC2570281
Full Text PDF–38K
Articles from Applied and Environmental Microbiology are provided here courtesy of
American Society for Microbiology (ASM)