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Volume 74(9);  May 2008
Minireview
Specific Molecular Recognition and Nonspecific Contributions to Bacterial Interaction Forces
Henk J. Busscher, Willem Norde, Henny C. van der Mei
Appl Environ Microbiol. 2008 May; 74(9): 2559–2564. Published online 2008 March 14. doi: 10.1128/AEM.02839-07
PMCID:
PMC2394898
Full Text PDF–244K
Genetics and Molecular Biology
Identification of Differentially Regulated Francisella tularensis Genes by Use of a Newly Developed Tn5-Based Transposon Delivery System
Blake W. Buchan, Molly K. McLendon, Bradley D. Jones
Appl Environ Microbiol. 2008 May; 74(9): 2637–2645. Published online 2008 March 14. doi: 10.1128/AEM.02882-07
PMCID:
PMC2394869
Abstract Full Text PDF–385K
Taxonomic and Strain-Specific Identification of the Probiotic Strain Lactobacillus rhamnosus 35 within the Lactobacillus casei Group
Sophie Coudeyras, Hélène Marchandin, Céline Fajon, Christiane Forestier
Appl Environ Microbiol. 2008 May; 74(9): 2679–2689. Published online 2008 March 7. doi: 10.1128/AEM.02286-07
PMCID:
PMC2394868
Abstract Full Text PDF–599K
Enzymology and Protein Engineering
Biochemical and Molecular Characterization of a Novel Type of Mutanase from Paenibacillus sp. Strain RM1: Identification of Its Mutan-Binding Domain, Essential for Degradation of Streptococcus mutans Biofilms
Isao Shimotsuura, Hiromitsu Kigawa, Motoyasu Ohdera, Howard K. Kuramitsu, Syozi Nakashima
Appl Environ Microbiol. 2008 May; 74(9): 2759–2765. Published online 2008 March 7. doi: 10.1128/AEM.02332-07
PMCID:
PMC2394904
Abstract Full Text PDF–752K
Physiology and Biotechnology
Multiple Pathways for Triacylglycerol Biosynthesis in Streptomyces coelicolor
Ana Arabolaza, Eduardo Rodriguez, Silvia Altabe, Hector Alvarez, Hugo Gramajo
Appl Environ Microbiol. 2008 May; 74(9): 2573–2582. Published online 2008 February 29. doi: 10.1128/AEM.02638-07
PMCID:
PMC2394905
Abstract Full Text PDF–524K
Global Response to Desiccation Stress in the Soil Actinomycete Rhodococcus jostii RHA1
Justin C. LeBlanc, Edmilson R. Gonçalves, William W. Mohn
Appl Environ Microbiol. 2008 May; 74(9): 2627–2636. Published online 2008 March 7. doi: 10.1128/AEM.02711-07
PMCID:
PMC2394902
Abstract Full Text PDF–610K Supplementary Material
The R1 Conjugative Plasmid Increases Escherichia coli Biofilm Formation through an Envelope Stress Response
Xiaole Yang, Qun Ma, Thomas K. Wood
Appl Environ Microbiol. 2008 May; 74(9): 2690–2699. Published online 2008 March 14. doi: 10.1128/AEM.02809-07
PMCID:
PMC2394867
Abstract Full Text PDF–1.4M Supplementary Material
Quantifying Genes and Transcripts To Assess the In Situ Physiology of “Dehalococcoides” spp. in a Trichloroethene-Contaminated Groundwater Site
Patrick K. H. Lee, Tamzen W. Macbeth, Kent S. Sorenson, Jr., Rula A. Deeb, Lisa Alvarez-Cohen
Appl Environ Microbiol. 2008 May; 74(9): 2728–2739. Published online 2008 March 7. doi: 10.1128/AEM.02199-07
PMCID:
PMC2394903
Abstract Full Text PDF–2.4M Supplementary Material
Malic Acid Production by Saccharomyces cerevisiae: Engineering of Pyruvate Carboxylation, Oxaloacetate Reduction, and Malate Export
Rintze M. Zelle, Erik de Hulster, Wouter A. van Winden, Pieter de Waard, Cor Dijkema, Aaron A. Winkler, Jan-Maarten A. Geertman, Johannes P. van Dijken, Jack T. Pronk, Antonius J. A. van Maris
Appl Environ Microbiol. 2008 May; 74(9): 2766–2777. Published online 2008 March 14. doi: 10.1128/AEM.02591-07
PMCID:
PMC2394876
Abstract Full Text PDF–854K Supplementary Material
Development of Bottom-Fermenting Saccharomyces Strains That Produce High SO2 Levels, Using Integrated Metabolome and Transcriptome Analysis
Satoshi Yoshida, Jun Imoto, Toshiko Minato, Rie Oouchi, Mao Sugihara, Takeo Imai, Tatsuji Ishiguro, Satoru Mizutani, Masaru Tomita, Tomoyoshi Soga, Hiroyuki Yoshimoto
Appl Environ Microbiol. 2008 May; 74(9): 2787–2796. Published online 2008 February 29. doi: 10.1128/AEM.01781-07
PMCID:
PMC2394901
Abstract Full Text PDF–1.1M
Sheathless Mutant of Cyanobacterium Gloeothece sp. Strain PCC 6909 with Increased Capacity To Remove Copper Ions from Aqueous Solutions
Ernesto Micheletti, Sara Pereira, Francesca Mannelli, Pedro Moradas-Ferreira, Paula Tamagnini, Roberto De Philippis
Appl Environ Microbiol. 2008 May; 74(9): 2797–2804. Published online 2008 March 7. doi: 10.1128/AEM.02212-07
Correction in:
Appl Environ Microbiol. 2008 August; 74(16): 5266.
PMCID:
PMC2394890
Abstract Full Text PDF–669K Correction
Dramatic Activation of Antibiotic Production in Streptomyces coelicolor by Cumulative Drug Resistance Mutations
Guojun Wang, Takeshi Hosaka, Kozo Ochi
Appl Environ Microbiol. 2008 May; 74(9): 2834–2840. Published online 2008 February 29. doi: 10.1128/AEM.02800-07
PMCID:
PMC2394871
Abstract Full Text PDF–532K Supplementary Material
Enterohemorrhagic Escherichia coli Exploits EspA Filaments for Attachment to Salad Leaves
Robert K. Shaw, Cedric N. Berger, Bart Feys, Stuart Knutton, Mark J. Pallen, Gad Frankel
Appl Environ Microbiol. 2008 May; 74(9): 2908–2914. Published online 2008 February 29. doi: 10.1128/AEM.02704-07
PMCID:
PMC2394865
Abstract Full Text PDF–972K
Highly Selective and Rapid Arsenic Removal by Metabolically Engineered Escherichia coli Cells Expressing Fucus vesiculosus Metallothionein
Shailendra Singh, Ashok Mulchandani, Wilfred Chen
Appl Environ Microbiol. 2008 May; 74(9): 2924–2927. Published online 2008 March 7. doi: 10.1128/AEM.02871-07
PMCID:
PMC2394894
Abstract Full Text PDF–93K
Mycology
Rapid Differentiation of Phenotypically Similar Yeast Species by Single-Strand Conformation Polymorphism Analysis of Ribosomal DNA
Qi-Ming Wang, Juan Li, Shi-An Wang, Feng-Yan Bai
Appl Environ Microbiol. 2008 May; 74(9): 2604–2611. Published online 2008 March 14. doi: 10.1128/AEM.02223-07
PMCID:
PMC2394880
Abstract Full Text PDF–350K
Imaging of Long-Distance α-Aminoisobutyric Acid Translocation Dynamics during Resource Capture by Serpula lacrymans
Monika Tlalka, Mark Fricker, Sarah Watkinson
Appl Environ Microbiol. 2008 May; 74(9): 2700–2708. Published online 2008 March 14. doi: 10.1128/AEM.02765-07
PMCID:
PMC2394889
Abstract Full Text PDF–1.0M Supplementary Material
Saline-Dependent Regulation of Manganese Peroxidase Genes in the Hypersaline-Tolerant White Rot Fungus Phlebia sp. Strain MG-60
Ichiro Kamei, Chieko Daikoku, Yuji Tsutsumi, Ryuichiro Kondo
Appl Environ Microbiol. 2008 May; 74(9): 2709–2716. Published online 2008 February 29. doi: 10.1128/AEM.02257-07
PMCID:
PMC2394866
Abstract Full Text PDF–780K
Mechanism for Oxidation of High-Molecular-Weight Substrates by a Fungal Versatile Peroxidase, MnP2
Takahisa Tsukihara, Yoichi Honda, Ryota Sakai, Takahito Watanabe, Takashi Watanabe
Appl Environ Microbiol. 2008 May; 74(9): 2873–2881. Published online 2008 March 7. doi: 10.1128/AEM.02080-07
PMCID:
PMC2394877
Abstract Full Text PDF–560K
Public Health Microbiology
Molecular Epidemiology of Bacillus anthracis: Determining the Correct Origin
Paola Pilo, Vincent Perreten, Joachim Frey
Appl Environ Microbiol. 2008 May; 74(9): 2928–2931. Published online 2008 March 7. doi: 10.1128/AEM.02574-07
PMCID:
PMC2394883
Abstract Full Text PDF–226K
Environmental Microbiology
Effect of Wastewater Treatment Plant Effluent on Microbial Function and Community Structure in the Sediment of a Freshwater Stream with Variable Seasonal Flow
Steven A. Wakelin, Matt J. Colloff, Rai S. Kookana
Appl Environ Microbiol. 2008 May; 74(9): 2659–2668. Published online 2008 March 14. doi: 10.1128/AEM.02348-07
PMCID:
PMC2394891
Abstract Full Text PDF–602K
Temporal Transcriptomic Microarray Analysis of “Dehalococcoides ethenogenes” Strain 195 during the Transition into Stationary Phase
David R. Johnson, Eoin L. Brodie, Alan E. Hubbard, Gary L. Andersen, Stephen H. Zinder, Lisa Alvarez-Cohen
Appl Environ Microbiol. 2008 May; 74(9): 2864–2872. Published online 2008 February 29. doi: 10.1128/AEM.02208-07
PMCID:
PMC2394897
Abstract Full Text PDF–310K Supplementary Material
Covariability of Vibrio cholerae Microdiversity and Environmental Parameters
Young-Gun Zo, Nipa Chokesajjawatee, Eiji Arakawa, Haruo Watanabe, Anwar Huq, Rita R. Colwell
Appl Environ Microbiol. 2008 May; 74(9): 2915–2920. Published online 2008 February 29. doi: 10.1128/AEM.02139-07
PMCID:
PMC2394870
Abstract Full Text PDF–507K Supplementary Material
Microbial Ecology
Selenate-Dependent Anaerobic Arsenite Oxidation by a Bacterium from Mono Lake, California
Jenny C. Fisher, James T. Hollibaugh
Appl Environ Microbiol. 2008 May; 74(9): 2588–2594. Published online 2008 March 7. doi: 10.1128/AEM.01995-07
PMCID:
PMC2394884
Abstract Full Text PDF–528K
Cultivation and Ecosystem Role of a Marine Roseobacter Clade-Affiliated Cluster Bacterium
Xavier Mayali, Peter J. S. Franks, Farooq Azam
Appl Environ Microbiol. 2008 May; 74(9): 2595–2603. Published online 2008 March 7. doi: 10.1128/AEM.02191-07
PMCID:
PMC2394886
Abstract Full Text PDF–763K
Novel Root Fungal Consortium Associated with a Dominant Desert Grass
Andrea Porras-Alfaro, Jose Herrera, Robert L. Sinsabaugh, Kylea J. Odenbach, Timothy Lowrey, Donald O. Natvig
Appl Environ Microbiol. 2008 May; 74(9): 2805–2813. Published online 2008 March 14. doi: 10.1128/AEM.02769-07
PMCID:
PMC2394874
Abstract Full Text PDF–866K
Biogeographic and Phylogenetic Diversity of Thermoacidophilic Cyanidiales in Yellowstone National Park, Japan, and New Zealand
J. A. Toplin, T. B. Norris, C. R. Lehr, T. R. McDermott, R. W. Castenholz
Appl Environ Microbiol. 2008 May; 74(9): 2822–2833. Published online 2008 March 14. doi: 10.1128/AEM.02741-07
PMCID:
PMC2394875
Abstract Full Text PDF–1.3M
Impact of Nitrate on the Structure and Function of Bacterial Biofilm Communities in Pipelines Used for Injection of Seawater into Oil Fields
Carsten U. Schwermer, Gaute Lavik, Raeid M. M. Abed, Braden Dunsmore, Timothy G. Ferdelman, Paul Stoodley, Armin Gieseke, Dirk de Beer
Appl Environ Microbiol. 2008 May; 74(9): 2841–2851. Published online 2008 March 14. doi: 10.1128/AEM.02027-07
PMCID:
PMC2394879
Abstract Full Text PDF–695K Supplementary Material
Dynamics of the Methanogenic Archaeal Community during Plant Residue Decomposition in an Anoxic Rice Field Soil
Jingjing Peng, Zhe Lü, Junpeng Rui, Yahai Lu
Appl Environ Microbiol. 2008 May; 74(9): 2894–2901. Published online 2008 March 14. doi: 10.1128/AEM.00070-08
PMCID:
PMC2394899
Abstract Full Text PDF–725K
Food Microbiology
Modeling the Aminogenic Potential of Enterococcus faecalis EF37 in Dry Fermented Sausages through Chemical and Molecular Approaches
Fausto Gardini, Sara Bover-Cid, Rosanna Tofalo, Nicoletta Belletti, Veronica Gatto, Giovanna Suzzi, Sandra Torriani
Appl Environ Microbiol. 2008 May; 74(9): 2740–2750. Published online 2008 February 22. doi: 10.1128/AEM.02267-07
PMCID:
PMC2394872
Abstract Full Text PDF–1.9M
Plant Microbiology
The Type III Secretion System of Xanthomonas fuscans subsp. fuscans Is Involved in the Phyllosphere Colonization Process and in Transmission to Seeds of Susceptible Beans
A. Darsonval, A. Darrasse, D. Meyer, M. Demarty, K. Durand, C. Bureau, C. Manceau, M.-A. Jacques
Appl Environ Microbiol. 2008 May; 74(9): 2669–2678. Published online 2008 March 1. doi: 10.1128/AEM.02906-07
PMCID:
PMC2394892
Abstract Full Text PDF–757K
Functional nodFE Genes Are Present in Sinorhizobium sp. Strain MUS10, a Symbiont of the Tropical Legume Sesbania rostrata
Hari B. Krishnan, Demosthenis Chronis
Appl Environ Microbiol. 2008 May; 74(9): 2921–2923. Published online 2008 March 7. doi: 10.1128/AEM.00075-08
PMCID:
PMC2394878
Abstract Full Text PDF–575K
Invertebrate Microbiology
Cysteine Scanning Mutagenesis of α4, a Putative Pore-Lining Helix of the Bacillus thuringiensis Insecticidal Toxin Cry1Aa
Frédéric Girard, Vincent Vachon, Gabrielle Préfontaine, Lucie Marceau, Yanhui Su, Geneviève Larouche, Charles Vincent, Jean-Louis Schwartz, Luke Masson, Raynald Laprade
Appl Environ Microbiol. 2008 May; 74(9): 2565–2572. Published online 2008 March 7. doi: 10.1128/AEM.00094-08
PMCID:
PMC2394908
Abstract Full Text PDF–773K
Methods
Comparison of BGM and PLC/PRC/5 Cell Lines for Total Culturable Viral Assay of Treated Sewage
Roberto A. Rodríguez, Patricia M. Gundy, Charles P. Gerba
Appl Environ Microbiol. 2008 May; 74(9): 2583–2587. Published online 2008 March 7. doi: 10.1128/AEM.00626-07
PMCID:
PMC2394896
Abstract Full Text PDF–120K
Randomly Amplified Polymorphic DNA PCR as a Tool for Assessment of Marine Viral Richness
Danielle M. Winget, K. Eric Wommack
Appl Environ Microbiol. 2008 May; 74(9): 2612–2618. Published online 2008 March 14. doi: 10.1128/AEM.02829-07
PMCID:
PMC2394873
Abstract Full Text PDF–1.6M
Targeted Inactivation of Francisella tularensis Genes by Group II Introns
Stephen A. Rodriguez, Jieh-Juen Yu, Greg Davis, Bernard P. Arulanandam, Karl E. Klose
Appl Environ Microbiol. 2008 May; 74(9): 2619–2626. Published online 2008 February 29. doi: 10.1128/AEM.02905-07
PMCID:
PMC2394887
Abstract Full Text PDF–430K
Analysis of Bacterial Communities in Soil by Use of Denaturing Gradient Gel Electrophoresis and Clone Libraries, as Influenced by Different Reverse Primers
Jolanda K. Brons, Jan Dirk van Elsas
Appl Environ Microbiol. 2008 May; 74(9): 2717–2727. Published online 2008 February 29. doi: 10.1128/AEM.02195-07
PMCID:
PMC2394888
Abstract Full Text PDF–1.0M
New Triplex Real-Time PCR Assay for Detection of Mycobacterium avium subsp. paratuberculosis in Bovine Feces
H. Schönenbrücher, A. Abdulmawjood, K. Failing, M. Bülte
Appl Environ Microbiol. 2008 May; 74(9): 2751–2758. Published online 2008 March 7. doi: 10.1128/AEM.02534-07
PMCID:
PMC2394907
Abstract Full Text PDF–94K
Feasibility of Transferring Fluorescent In Situ Hybridization Probes to an 18S rRNA Gene Phylochip and Mapping of Signal Intensities
Katja Metfies, Linda K. Medlin
Appl Environ Microbiol. 2008 May; 74(9): 2814–2821. Published online 2008 March 7. doi: 10.1128/AEM.02122-07
PMCID:
PMC2394893
Abstract Full Text PDF–460K
Relative Abundance of Bacteroides spp. in Stools and Wastewaters as Determined by Hierarchical Oligonucleotide Primer Extension
Pei-Ying Hong, Jer-Horng Wu, Wen-Tso Liu
Appl Environ Microbiol. 2008 May; 74(9): 2882–2893. Published online 2008 March 14. doi: 10.1128/AEM.02568-07
PMCID:
PMC2394900
Abstract Full Text PDF–765K
Innovative Methods for Soil DNA Purification Tested in Soils with Widely Differing Characteristics
Marketa Sagova-Mareckova, Ladislav Cermak, Jitka Novotna, Kamila Plhackova, Jana Forstova, Jan Kopecky
Appl Environ Microbiol. 2008 May; 74(9): 2902–2907. Published online 2008 March 14. doi: 10.1128/AEM.02161-07
PMCID:
PMC2394906
Abstract Full Text PDF–222K Supplementary Material
Evolutionary and Genomic Microbiology
Genomic Insights into Mn(II) Oxidation by the Marine Alphaproteobacterium Aurantimonas sp. Strain SI85-9A1
Gregory J. Dick, Sheila Podell, Hope A. Johnson, Yadira Rivera-Espinoza, Rizlan Bernier-Latmani, James K. McCarthy, Justin W. Torpey, Brian G. Clement, Terry Gaasterland, Bradley M. Tebo
Appl Environ Microbiol. 2008 May; 74(9): 2646–2658. Published online 2008 March 14. doi: 10.1128/AEM.01656-07
PMCID:
PMC2394881
Abstract Full Text PDF–2.0M Supplementary Material
Analysis of Neurotoxin Cluster Genes in Clostridium botulinum Strains Producing Botulinum Neurotoxin Serotype A Subtypes
Mark J. Jacobson, Guangyun Lin, Brian Raphael, Joanne Andreadis, Eric A. Johnson
Appl Environ Microbiol. 2008 May; 74(9): 2778–2786. Published online 2008 March 7. doi: 10.1128/AEM.02828-07
PMCID:
PMC2394882
Abstract Full Text PDF–282K
Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter
Shawn R. Starkenburg, Frank W. Larimer, Lisa Y. Stein, Martin G. Klotz, Patrick S. G. Chain, Luis A. Sayavedra-Soto, Amisha T. Poret-Peterson, Mira E. Gentry, Daniel J. Arp, Bess Ward, Peter J. Bottomley
Appl Environ Microbiol. 2008 May; 74(9): 2852–2863. Published online 2008 March 7. doi: 10.1128/AEM.02311-07
PMCID:
PMC2394895
Abstract Full Text PDF–2.3M Supplementary Material
Erratum
Articles from Applied and Environmental Microbiology are provided here courtesy of
American Society for Microbiology (ASM)