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Volume 9(Suppl 1);  2008
Introduction
Bioinformatics research in the Asia Pacific: a 2007 update
Shoba Ranganathan, Michael Gribskov, Tin Wee Tan
BMC Bioinformatics. 2008; 9(Suppl 1): S1. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S1
PMCID:
PMC2259402
Abstract Full Text PDF–386K
Proceedings
SNP@Promoter: a database of human SNPs (Single Nucleotide Polymorphisms) within the putative promoter regions
Byoung-Chul Kim, Woo-Yeon Kim, Daeui Park, Won-Hyong Chung, Kwang-sik Shin, Jong Bhak
BMC Bioinformatics. 2008; 9(Suppl 1): S2. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S2
PMCID:
PMC2259403
Abstract Full Text PDF–739K
Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles
Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin, Wen-Lian Hsu
BMC Bioinformatics. 2008; 9(Suppl 1): S3. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S3
PMCID:
PMC2259404
Abstract Full Text PDF–773K
Transmembrane helix prediction using amino acid property features and latent semantic analysis
Madhavi Ganapathiraju, N Balakrishnan, Raj Reddy, Judith Klein-Seetharaman
BMC Bioinformatics. 2008; 9(Suppl 1): S4. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S4
PMCID:
PMC2259405
Abstract Full Text PDF–1.0M
Towards ontology-driven navigation of the lipid bibliosphere
Christopher JO Baker, Rajaraman Kanagasabai, Wee Tiong Ang, Anitha Veeramani, Hong-Sang Low, Markus R Wenk
BMC Bioinformatics. 2008; 9(Suppl 1): S5. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S5
PMCID:
PMC2259406
Abstract Full Text PDF–827K
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations
Qingwei Xu, Yixiang Shi, Qiang Lu, Guoqing Zhang, Qingming Luo, Yixue Li
BMC Bioinformatics. 2008; 9(Suppl 1): S6. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S6
PMCID:
PMC2259407
Abstract Full Text PDF–1.3M
Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses
Olivo Miotto, Tin Wee Tan, Vladimir Brusic
BMC Bioinformatics. 2008; 9(Suppl 1): S7. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S7
PMCID:
PMC2259408
Abstract Full Text PDF–695K Supplementary Material
The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays
Shu-Hwa Chen, Chen-Zen Lo, Ming-Chi Tsai, Chao A Hsiung, Chung-Yen Lin
BMC Bioinformatics. 2008; 9(Suppl 1): S8. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S8
PMCID:
PMC2259409
Abstract Full Text PDF–1.0M
Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments
Hongya Zhao, Kwok-Leung Chan, Lee-Ming Cheng, Hong Yan
BMC Bioinformatics. 2008; 9(Suppl 1): S9. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S9
PMCID:
PMC2259410
Abstract Full Text PDF–638K
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches
Shivashankar H Nagaraj, Robin B Gasser, Alasdair J Nisbet, Shoba Ranganathan
BMC Bioinformatics. 2008; 9(Suppl 1): S10. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S10
PMCID:
PMC2259411
Abstract Full Text PDF–859K Supplementary Material
Analyzing the simplicial decomposition of spatial protein structures
Rafael Ördög, Zoltán Szabadka, Vince Grolmusz
BMC Bioinformatics. 2008; 9(Suppl 1): S11. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S11
PMCID:
PMC2259412
Abstract Full Text PDF–999K
Improved general regression network for protein domain boundary prediction
Paul D Yoo, Abdur R Sikder, Bing Bing Zhou, Albert Y Zomaya
BMC Bioinformatics. 2008; 9(Suppl 1): S12. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S12
PMCID:
PMC2259413
Abstract Full Text PDF–751K
Functional site prediction selects correct protein models
Vijayalakshmi Chelliah, William R Taylor
BMC Bioinformatics. 2008; 9(Suppl 1): S13. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S13
PMCID:
PMC2259414
Abstract Full Text PDF–1.4M
Modelling the structures of G protein-coupled receptors aided by three-dimensional validation
Siavoush Dastmalchi, W Bret Church, Michael B Morris
BMC Bioinformatics. 2008; 9(Suppl 1): S14. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S14
PMCID:
PMC2259415
Abstract Full Text PDF–1.2M Supplementary Material
Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage
Khar Heng Choo, Joo Chuan Tong, Shoba Ranganathan
BMC Bioinformatics. 2008; 9(Suppl 1): S15. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S15
PMCID:
PMC2259416
Abstract Full Text PDF–974K
Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors
Naveena Yanamala, Kalyan C Tirupula, Judith Klein-Seetharaman
BMC Bioinformatics. 2008; 9(Suppl 1): S16. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S16
PMCID:
PMC2259417
Abstract Full Text PDF–2.1M
Stability of the core domain of p53: insights from computer simulations
Arumugam Madhumalar, Derek John Smith, Chandra Verma
BMC Bioinformatics. 2008; 9(Suppl 1): S17. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S17
PMCID:
PMC2259418
Abstract Full Text PDF–2.5M
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis
Olivo Miotto, AT Heiny, Tin Wee Tan, J Thomas August, Vladimir Brusic
BMC Bioinformatics. 2008; 9(Suppl 1): S18. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S18
PMCID:
PMC2259419
Abstract Full Text PDF–1.1M Supplementary Material
Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes
Guang Lan Zhang, Asif M Khan, Kellathur N Srinivasan, AT Heiny, KX Lee, Chee Keong Kwoh, J Thomas August, Vladimir Brusic
BMC Bioinformatics. 2008; 9(Suppl 1): S19. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S19
PMCID:
PMC2259420
Abstract Full Text PDF–537K
SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803
Woo-Yeon Kim, Sungsoo Kang, Byoung-Chul Kim, Jeehyun Oh, Seongwoong Cho, Jong Bhak, Jong-Soon Choi
BMC Bioinformatics. 2008; 9(Suppl 1): S20. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S20
PMCID:
PMC2259421
Abstract Full Text PDF–1.8M
Motif-directed network component analysis for regulatory network inference
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wang, Robert Clarke, Eric Hoffman
BMC Bioinformatics. 2008; 9(Suppl 1): S21. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S21
PMCID:
PMC2259422
Abstract Full Text PDF–904K Supplementary Material
Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors
Lesheng Kong, Shoba Ranganathan
BMC Bioinformatics. 2008; 9(Suppl 1): S22. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S22
PMCID:
PMC2259423
Abstract Full Text PDF–1.5M Supplementary Material
Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment
Dadabhai T Singh, Rahul Trehan, Bertil Schmidt, Timo Bretschneider
BMC Bioinformatics. 2008; 9(Suppl 1): S23. Published online 2008 February 13. doi: 10.1186/1471-2105-9-S1-S23
PMCID:
PMC2259424
Abstract Full Text PDF–1016K Supplementary Material
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