PMCCPMCCPMCC

Search tips
Search criteria 

Advanced
Logo of aemJournal InfoAuthorsReviewersSubscribersPermissionsJournals.ASM.orgJournal
 
Volume 71(8);  August 2005
Minireview
Microbial Diversity and Its Relationship to Planetary Protection
Ronald L. Crawford
Appl Environ Microbiol. 2005 August; 71(8): 4163–4168. doi: 10.1128/AEM.71.8.4163-4168.2005
PMCID:
PMC1183353
Full Text PDF–67K
Genetics and Molecular Biology
Integration of Signals through Crc and PtsN in Catabolite Repression of Pseudomonas putida TOL Plasmid pWW0
Isabel Aranda-Olmedo, Juan L. Ramos, Silvia Marqués
Appl Environ Microbiol. 2005 August; 71(8): 4191–4198. doi: 10.1128/AEM.71.8.4191-4198.2005
PMCID:
PMC1183334
Abstract Full Text PDF–237K
Elucidation of a Carotenoid Biosynthesis Gene Cluster Encoding a Novel Enzyme, 2,2′-β-Hydroxylase, from Brevundimonas sp. Strain SD212 and Combinatorial Biosynthesis of New or Rare Xanthophylls
Yasuhiro Nishida, Kyoko Adachi, Hiroaki Kasai, Yoshikazu Shizuri, Kazutoshi Shindo, Akiyoshi Sawabe, Sadao Komemushi, Wataru Miki, Norihiko Misawa
Appl Environ Microbiol. 2005 August; 71(8): 4286–4296. doi: 10.1128/AEM.71.8.4286-4296.2005
PMCID:
PMC1183362
Abstract Full Text PDF–273K
Genetic Characterization of Accumulation of Polyhydroxyalkanoate from Styrene in Pseudomonas putida CA-3
Niall D. O'Leary, Kevin E. O'Connor, Patrick Ward, Miriam Goff, Alan D. W. Dobson
Appl Environ Microbiol. 2005 August; 71(8): 4380–4387. doi: 10.1128/AEM.71.8.4380-4387.2005
PMCID:
PMC1183336
Abstract Full Text PDF–153K
Expression of the psl Operon in Pseudomonas aeruginosa PAO1 Biofilms: PslA Performs an Essential Function in Biofilm Formation
Jörg Overhage, Mirle Schemionek, Jeremy S. Webb, Bernd H. A. Rehm
Appl Environ Microbiol. 2005 August; 71(8): 4407–4413. doi: 10.1128/AEM.71.8.4407-4413.2005
PMCID:
PMC1183271
Abstract Full Text PDF–290K
Identification and Characterization of Putative Virulence Genes and Gene Clusters in Aeromonas hydrophila PPD134/91
H. B. Yu, Y. L. Zhang, Y. L. Lau, F. Yao, S. Vilches, S. Merino, J. M. Tomas, S. P. Howard, K. Y. Leung
Appl Environ Microbiol. 2005 August; 71(8): 4469–4477. doi: 10.1128/AEM.71.8.4469-4477.2005
PMCID:
PMC1183340
Abstract Full Text PDF–155K
Analysis of the hupSL Operon of the Nonheterocystous Cyanobacterium Lyngbya majuscula CCAP 1446/4: Regulation of Transcription and Expression under a Light-Dark Regimen
Elsa Leitão, Fredrik Oxelfelt, Paulo Oliveira, Pedro Moradas-Ferreira, Paula Tamagnini
Appl Environ Microbiol. 2005 August; 71(8): 4567–4576. doi: 10.1128/AEM.71.8.4567-4576.2005
PMCID:
PMC1183275
Abstract Full Text PDF–359K
Escherichia coli K1's Capsule Is a Barrier to Bacteriophage T7
Dean Scholl, Sankar Adhya, Carl Merril
Appl Environ Microbiol. 2005 August; 71(8): 4872–4874. doi: 10.1128/AEM.71.8.4872-4874.2005
PMCID:
PMC1183359
Abstract Full Text PDF–156K
Presence and Characterization of a Mosaic Genomic Island Which Distinguishes Sorbitol-Fermenting Enterohemorrhagic Escherichia coli O157:H− from E. coli O157:H7
Andreas Janka, Georg Becker, Anne-Katharina Sonntag, Martina Bielaszewska, Ulrich Dobrindt, Helge Karch
Appl Environ Microbiol. 2005 August; 71(8): 4875–4878. doi: 10.1128/AEM.71.8.4875-4878.2005
PMCID:
PMC1183287
Abstract Full Text PDF–97K
Molecular Serotyping of Escherichia coli O26:H11
Lisa M. Durso, James L. Bono, James E. Keen
Appl Environ Microbiol. 2005 August; 71(8): 4941–4944. doi: 10.1128/AEM.71.8.4941-4944.2005
PMCID:
PMC1183322
Abstract Full Text PDF–75K
Enzymology and Protein Engineering
Halotolerant Cyanobacterium Aphanothece halophytica Contains NapA-Type Na+/H+ Antiporters with Novel Ion Specificity That Are Involved in Salt Tolerance at Alkaline pH
Nuchanat Wutipraditkul, Rungaroon Waditee, Aran Incharoensakdi, Takashi Hibino, Yoshito Tanaka, Tatsunosuke Nakamura, Masamitsu Shikata, Tetsuko Takabe, Teruhiro Takabe
Appl Environ Microbiol. 2005 August; 71(8): 4176–4184. doi: 10.1128/AEM.71.8.4176-4184.2005
PMCID:
PMC1183346
Abstract Full Text PDF–257K
Use of Enrichment Culture for Directed Evolution of the Vibrio fluvialis JS17 ω-Transaminase, Which Is Resistant to Product Inhibition by Aliphatic Ketones
Hyungdon Yun, Bum-Yeol Hwang, Jae-Hun Lee, Byung-Gee Kim
Appl Environ Microbiol. 2005 August; 71(8): 4220–4224. doi: 10.1128/AEM.71.8.4220-4224.2005
PMCID:
PMC1183280
Abstract Full Text PDF–104K
Characterization of an Unusual Cold-Active β-Glucosidase Belonging to Family 3 of the Glycoside Hydrolases from the Psychrophilic Isolate Paenibacillus sp. Strain C7
Stephanie Shipkowski, Jean E. Brenchley
Appl Environ Microbiol. 2005 August; 71(8): 4225–4232. doi: 10.1128/AEM.71.8.4225-4232.2005
PMCID:
PMC1183342
Abstract Full Text PDF–162K
First Archaeal Inorganic Polyphosphate/ATP-Dependent NAD Kinase, from Hyperthermophilic Archaeon Pyrococcus horikoshii: Cloning, Expression, and Characterization
Haruhiko Sakuraba, Ryushi Kawakami, Toshihisa Ohshima
Appl Environ Microbiol. 2005 August; 71(8): 4352–4358. doi: 10.1128/AEM.71.8.4352-4358.2005
PMCID:
PMC1183369
Abstract Full Text PDF–290K
Two Rhizobial Strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, Encode Haloalkane Dehalogenases with Novel Structures and Substrate Specificities
Yukari Sato, Marta Monincová, Radka Chaloupková, Zbyňek Prokop, Yoshiyuki Ohtsubo, Kiwamu Minamisawa, Masataka Tsuda, Jiří Damborský, Yuji Nagata
Appl Environ Microbiol. 2005 August; 71(8): 4372–4379. doi: 10.1128/AEM.71.8.4372-4379.2005
PMCID:
PMC1183339
Abstract Full Text PDF–338K
Characterization of an Inducible Phenylserine Aldolase from Pseudomonas putida 24-1
Haruo Misono, Hiroshi Maeda, Kouiti Tuda, Sakuko Ueshima, Naoto Miyazaki, Shinji Nagata
Appl Environ Microbiol. 2005 August; 71(8): 4602–4609. doi: 10.1128/AEM.71.8.4602-4609.2005
PMCID:
PMC1183316
Abstract Full Text PDF–426K
Regiospecificity of Two Multicomponent Monooxygenases from Pseudomonas stutzeri OX1: Molecular Basis for Catabolic Adaptation of This Microorganism to Methylated Aromatic Compounds
Valeria Cafaro, Eugenio Notomista, Paola Capasso, Alberto Di Donato
Appl Environ Microbiol. 2005 August; 71(8): 4736–4743. doi: 10.1128/AEM.71.8.4736-4743.2005
PMCID:
PMC1183305
Abstract Full Text PDF–134K
Mutation of Glutamic Acid 103 of Toluene o-Xylene Monooxygenase as a Means To Control the Catabolic Efficiency of a Recombinant Upper Pathway for Degradation of Methylated Aromatic Compounds
Valeria Cafaro, Eugenio Notomista, Paola Capasso, Alberto Di Donato
Appl Environ Microbiol. 2005 August; 71(8): 4744–4750. doi: 10.1128/AEM.71.8.4744-4750.2005
PMCID:
PMC1183268
Abstract Full Text PDF–257K
Physiology and Biotechnology
Simultaneous Display of Multiple Foreign Peptides in the FliD Capping and FliC Filament Proteins of the Escherichia coli Flagellum
Katariina Majander, Timo K. Korhonen, Benita Westerlund-Wikström
Appl Environ Microbiol. 2005 August; 71(8): 4263–4268. doi: 10.1128/AEM.71.8.4263-4268.2005
PMCID:
PMC1183357
Abstract Full Text PDF–275K
Expression of 3-Ketoacyl-Acyl Carrier Protein Reductase (fabG) Genes Enhances Production of Polyhydroxyalkanoate Copolymer from Glucose in Recombinant Escherichia coli JM109
Christopher T. Nomura, Kazunori Taguchi, Zhihua Gan, Kazuhiro Kuwabara, Tomoyo Tanaka, Kazuma Takase, Yoshiharu Doi
Appl Environ Microbiol. 2005 August; 71(8): 4297–4306. doi: 10.1128/AEM.71.8.4297-4306.2005
PMCID:
PMC1183366
Abstract Full Text PDF–203K
Secretion of Human Serum Albumin by Kluyveromyces lactis Overexpressing KlPDI1 and KlERO1
Tiziana Lodi, Barbara Neglia, Claudia Donnini
Appl Environ Microbiol. 2005 August; 71(8): 4359–4363. doi: 10.1128/AEM.71.8.4359-4363.2005
PMCID:
PMC1183311
Abstract Full Text PDF–138K
Allophanate Hydrolase, Not Urease, Functions in Bacterial Cyanuric Acid Metabolism
Gang Cheng, Nir Shapir, Michael J. Sadowsky, Lawrence P. Wackett
Appl Environ Microbiol. 2005 August; 71(8): 4437–4445. doi: 10.1128/AEM.71.8.4437-4445.2005
PMCID:
PMC1183272
Abstract Full Text PDF–269K
Biodesulfurization of Dibenzothiophene by Microbial Cells Coated with Magnetite Nanoparticles
GuoBin Shan, JianMin Xing, HuaiYing Zhang, HuiZhou Liu
Appl Environ Microbiol. 2005 August; 71(8): 4497–4502. doi: 10.1128/AEM.71.8.4497-4502.2005
PMCID:
PMC1183266
Abstract Full Text PDF–269K
Chemobiosynthesis of Novel 6-Deoxyerythronolide B Analogues by Mutation of the Loading Module of 6-Deoxyerythronolide B Synthase 1
Sumati Murli, Karen S. MacMillan, Zhihao Hu, Gary W. Ashley, Steven D. Dong, James T. Kealey, Christopher D. Reeves, Jonathan Kennedy
Appl Environ Microbiol. 2005 August; 71(8): 4503–4509. doi: 10.1128/AEM.71.8.4503-4509.2005
PMCID:
PMC1183267
Abstract Full Text PDF–177K
Activation of the Protein Kinase C1 Pathway upon Continuous Heat Stress in Saccharomyces cerevisiae Is Triggered by an Intracellular Increase in Osmolarity due to Trehalose Accumulation
Femke I. C. Mensonides, Stanley Brul, Frans M. Klis, Klaas J. Hellingwerf, M. Joost Teixeira de Mattos
Appl Environ Microbiol. 2005 August; 71(8): 4531–4538. doi: 10.1128/AEM.71.8.4531-4538.2005
PMCID:
PMC1183310
Abstract Full Text PDF–210K
Mycosubtilin Overproduction by Bacillus subtilis BBG100 Enhances the Organism's Antagonistic and Biocontrol Activities
Valérie Leclère, Max Béchet, Akram Adam, Jean-Sébastien Guez, Bernard Wathelet, Marc Ongena, Philippe Thonart, Frédérique Gancel, Marlène Chollet-Imbert, Philippe Jacques
Appl Environ Microbiol. 2005 August; 71(8): 4577–4584. doi: 10.1128/AEM.71.8.4577-4584.2005
PMCID:
PMC1183317
Abstract Full Text PDF–194K
Involvement of a Branched-Chain Aminotransferase in Production of Volatile Sulfur Compounds in Yarrowia lipolytica
Daniela Cernat Bondar, Jean-Marie Beckerich, Pascal Bonnarme
Appl Environ Microbiol. 2005 August; 71(8): 4585–4591. doi: 10.1128/AEM.71.8.4585-4591.2005
PMCID:
PMC1183345
Abstract Full Text PDF–447K
Expression of 17 Genes in Clostridium thermocellum ATCC 27405 during Fermentation of Cellulose or Cellobiose in Continuous Culture
David M. Stevenson, Paul J. Weimer
Appl Environ Microbiol. 2005 August; 71(8): 4672–4678. doi: 10.1128/AEM.71.8.4672-4678.2005
PMCID:
PMC1183361
Abstract Full Text PDF–206K
Proteins Encoded by Sphingomonas elodea ATCC 31461 rmlA and ugpG Genes, Involved in Gellan Gum Biosynthesis, Exhibit both dTDP- and UDP-Glucose Pyrophosphorylase Activities
Elisabete Silva, Ana Rita Marques, Arsénio Mendes Fialho, Ana Teresa Granja, Isabel Sá-Correia
Appl Environ Microbiol. 2005 August; 71(8): 4703–4712. doi: 10.1128/AEM.71.8.4703-4712.2005
PMCID:
PMC1183319
Abstract Full Text PDF–259K
Engineering of Phenylacetaldehyde Reductase for Efficient Substrate Conversion in Concentrated 2-Propanol
Yoshihide Makino, Kousuke Inoue, Tohru Dairi, Nobuya Itoh
Appl Environ Microbiol. 2005 August; 71(8): 4713–4720. doi: 10.1128/AEM.71.8.4713-4720.2005
PMCID:
PMC1183298
Abstract Full Text PDF–342K
Characterization of Colony Morphology Variants Isolated from Pseudomonas aeruginosa Biofilms
Mary Jo Kirisits, Lynne Prost, Melissa Starkey, Matthew R. Parsek
Appl Environ Microbiol. 2005 August; 71(8): 4809–4821. doi: 10.1128/AEM.71.8.4809-4821.2005
PMCID:
PMC1183349
Abstract Full Text PDF–686K
Insights into the Biosynthesis of the Benzoquinone Ansamycins Geldanamycin and Herbimycin, Obtained by Gene Sequencing and Disruption
Andreas Rascher, Zhihao Hu, Greg O. Buchanan, Ralph Reid, C. Richard Hutchinson
Appl Environ Microbiol. 2005 August; 71(8): 4862–4871. doi: 10.1128/AEM.71.8.4862-4871.2005
PMCID:
PMC1183368
Abstract Full Text PDF–338K Supplementary Material
Mycology
Characterization of Carbohydrate-Binding Cytochrome b562 from the White-Rot Fungus Phanerochaete chrysosporium
Makoto Yoshida, Kiyohiko Igarashi, Masahisa Wada, Satoshi Kaneko, Norio Suzuki, Hirotoshi Matsumura, Nobuhumi Nakamura, Hiroyuki Ohno, Masahiro Samejima
Appl Environ Microbiol. 2005 August; 71(8): 4548–4555. doi: 10.1128/AEM.71.8.4548-4555.2005
PMCID:
PMC1183321
Abstract Full Text PDF–317K
Study of Spanish Grape Mycobiota and Ochratoxin A Production by Isolates of Aspergillus tubingensis and Other Members of Aspergillus Section Nigri
Angel Medina, Rufino Mateo, Laura López-Ocaña, Francisco Manuel Valle-Algarra, Misericordia Jiménez
Appl Environ Microbiol. 2005 August; 71(8): 4696–4702. doi: 10.1128/AEM.71.8.4696-4702.2005
PMCID:
PMC1183270
Abstract Full Text PDF–92K
Isolation and Characterization of Aspergillus oryzae Vacuolar Protein Sorting Mutants
Mamoru Ohneda, Manabu Arioka, Katsuhiko Kitamoto
Appl Environ Microbiol. 2005 August; 71(8): 4856–4861. doi: 10.1128/AEM.71.8.4856-4861.2005
PMCID:
PMC1183288
Abstract Full Text PDF–248K
Farnesol Concentrations Required To Block Germ Tube Formation in Candida albicans in the Presence and Absence of Serum
Daniel D. Mosel, Raluca Dumitru, Jacob M. Hornby, Audrey L. Atkin, Kenneth W. Nickerson
Appl Environ Microbiol. 2005 August; 71(8): 4938–4940. doi: 10.1128/AEM.71.8.4938-4940.2005
PMCID:
PMC1183276
Abstract Full Text PDF–54K
Public Health Microbiology
Role for HtrA in Stress Induction and Virulence Potential in Listeria monocytogenes
Helena M. Stack, Roy D. Sleator, Megan Bowers, Colin Hill, Cormac G. M. Gahan
Appl Environ Microbiol. 2005 August; 71(8): 4241–4247. doi: 10.1128/AEM.71.8.4241-4247.2005
PMCID:
PMC1183364
Abstract Full Text PDF–231K
Distribution of Cryptosporidium Genotypes in Storm Event Water Samples from Three Watersheds in New York
Jianlin Jiang, Kerri A. Alderisio, Lihua Xiao
Appl Environ Microbiol. 2005 August; 71(8): 4446–4454. doi: 10.1128/AEM.71.8.4446-4454.2005
PMCID:
PMC1183313
Abstract Full Text PDF–339K
Host Species-Specific Metabolic Fingerprint Database for Enterococci and Escherichia coli and Its Application To Identify Sources of Fecal Contamination in Surface Waters
W. Ahmed, R. Neller, M. Katouli
Appl Environ Microbiol. 2005 August; 71(8): 4461–4468. doi: 10.1128/AEM.71.8.4461-4468.2005
PMCID:
PMC1183341
Abstract Full Text PDF–107K
Characterization of Botulinum Progenitor Toxins by Mass Spectrometry
Harry B. Hines, Frank Lebeda, Martha Hale, Ernst E. Brueggemann
Appl Environ Microbiol. 2005 August; 71(8): 4478–4486. doi: 10.1128/AEM.71.8.4478-4486.2005
PMCID:
PMC1183299
Abstract Full Text PDF–159K Supplementary Material
Mobility of Protozoa through Narrow Channels
Wei Wang, Leslie M. Shor, Eugene J. LeBoeuf, John P. Wikswo, David S. Kosson
Appl Environ Microbiol. 2005 August; 71(8): 4628–4637. doi: 10.1128/AEM.71.8.4628-4637.2005
PMCID:
PMC1183301
Abstract Full Text PDF–289K
Critical Factors Influencing the Occurrence of Vibrio cholerae in the Environment of Bangladesh
Anwar Huq, R. Bradley Sack, Azhar Nizam, Ira M. Longini, G. Balakrish Nair, Afsar Ali, J. Glenn Morris, Jr., M. N. Huda Khan, A. Kasem Siddique, Mohammed Yunus, M. John Albert, David A. Sack, Rita R. Colwell
Appl Environ Microbiol. 2005 August; 71(8): 4645–4654. doi: 10.1128/AEM.71.8.4645-4654.2005
PMCID:
PMC1183289
Abstract Full Text PDF–241K
Molecular Characterization of Korean Bacillus anthracis Isolates by Amplified Fragment Length Polymorphism Analysis and Multilocus Variable-Number Tandem Repeat Analysis
Chunsun Ryu, Kyunghee Lee, Han-Jun Hawng, Cheon-Kwon Yoo, Won-Keun Seong, Hee-Bok Oh
Appl Environ Microbiol. 2005 August; 71(8): 4664–4671. doi: 10.1128/AEM.71.8.4664-4671.2005
PMCID:
PMC1183344
Abstract Full Text PDF–249K
Statistical Analyses: Possible Reasons for Unreliability of Source Tracking Efforts
Clarivel Lasalde, Roberto Rodríguez, Gary A. Toranzos
Appl Environ Microbiol. 2005 August; 71(8): 4690–4695. doi: 10.1128/AEM.71.8.4690-4695.2005
PMCID:
PMC1183283
Abstract Full Text PDF–154K
Effect of pH on an In Vitro Model of Gastric Microbiota in Enteral Nutrition Patients
Graeme A. O'May, Nigel Reynolds, George T. Macfarlane
Appl Environ Microbiol. 2005 August; 71(8): 4777–4783. doi: 10.1128/AEM.71.8.4777-4783.2005
PMCID:
PMC1183347
Abstract Full Text PDF–278K
Adhesion of Vibrio cholerae to Granular Starches
Hanan Gancz, Orly Niderman-Meyer, Meir Broza, Yechezkel Kashi, Eyal Shimoni
Appl Environ Microbiol. 2005 August; 71(8): 4850–4855. doi: 10.1128/AEM.71.8.4850-4855.2005
PMCID:
PMC1183348
Abstract Full Text PDF–172K
Specificity of a Bacteroides thetaiotaomicron Marker for Human Feces
C. Andrew Carson, Jessica M. Christiansen, Helen Yampara-Iquise, Verel W. Benson, Claire Baffaut, Jerri V. Davis, Robert R. Broz, William B. Kurtz, Wendi M. Rogers, William H. Fales
Appl Environ Microbiol. 2005 August; 71(8): 4945–4949. doi: 10.1128/AEM.71.8.4945-4949.2005
PMCID:
PMC1183297
Abstract Full Text PDF–112K
Environmental Microbiology
Phosphate Starvation-Inducible Gene ushA Encodes a 5′ Nucleotidase Required for Growth of Corynebacterium glutamicum on Media with Nucleotides as the Phosphorus Source
Doris Rittmann, Ulrike Sorger-Herrmann, Volker F. Wendisch
Appl Environ Microbiol. 2005 August; 71(8): 4339–4344. doi: 10.1128/AEM.71.8.4339-4344.2005
PMCID:
PMC1183354
Abstract Full Text PDF–125K
Cadmium Accumulation and DNA Homology with Metal Resistance Genes in Sulfate-Reducing Bacteria
Naghma Naz, Hilary K. Young, Nuzhat Ahmed, Geoffrey M. Gadd
Appl Environ Microbiol. 2005 August; 71(8): 4610–4618. doi: 10.1128/AEM.71.8.4610-4618.2005
PMCID:
PMC1183370
Abstract Full Text PDF–305K
Biological Control of Hog Waste Odor through Stimulated Microbial Fe(III) Reduction
John D. Coates, Kimberly A. Cole, Urania Michaelidou, Jennifer Patrick, Michael J. McInerney, Laurie A. Achenbach
Appl Environ Microbiol. 2005 August; 71(8): 4728–4735. doi: 10.1128/AEM.71.8.4728-4735.2005
PMCID:
PMC1183269
Abstract Full Text PDF–210K
Novel AroA with High Tolerance to Glyphosate, Encoded by a Gene of Pseudomonas putida 4G-1 Isolated from an Extremely Polluted Environment in China
Yi-Cheng Sun, Yan-Cheng Chen, Zhe-Xian Tian, Feng-Mei Li, Xin-Yue Wang, Jing Zhang, Zhen-Long Xiao, Min Lin, Niamh Gilmartin, David N. Dowling, Yi-Ping Wang
Appl Environ Microbiol. 2005 August; 71(8): 4771–4776. doi: 10.1128/AEM.71.8.4771-4776.2005
PMCID:
PMC1183292
Abstract Full Text PDF–604K
Microbial Ecology
Comparison between Cultured Small-Intestinal and Fecal Microbiotas in Beagle Dogs
Silja Mentula, Jaana Harmoinen, Matti Heikkilä, Elias Westermarck, Merja Rautio, Pentti Huovinen, Eija Könönen
Appl Environ Microbiol. 2005 August; 71(8): 4169–4175. doi: 10.1128/AEM.71.8.4169-4175.2005
PMCID:
PMC1183360
Abstract Full Text PDF–227K
Naturally Occurring DNA Transfer System Associated with Membrane Vesicles in Cellulolytic Ruminococcus spp. of Ruminal Origin
Athol V. Klieve, Melvin T. Yokoyama, Robert J. Forster, Diane Ouwerkerk, Peter A. Bain, Erin L. Mawhinney
Appl Environ Microbiol. 2005 August; 71(8): 4248–4253. doi: 10.1128/AEM.71.8.4248-4253.2005
PMCID:
PMC1183309
Abstract Full Text PDF–217K
Diel Infection of a Cyanobacterium by a Contractile Bacteriophage
C. Cheng Kao, Susan Green, Barry Stein, Susan S. Golden
Appl Environ Microbiol. 2005 August; 71(8): 4276–4279. doi: 10.1128/AEM.71.8.4276-4279.2005
PMCID:
PMC1183273
Abstract Full Text PDF–202K
Phylogenetic Characterization of a Polychlorinated-Dioxin- Dechlorinating Microbial Community by Use of Microcosm Studies
Naoko Yoshida, Nobutaka Takahashi, Akira Hiraishi
Appl Environ Microbiol. 2005 August; 71(8): 4325–4334. doi: 10.1128/AEM.71.8.4325-4334.2005
PMCID:
PMC1183323
Abstract Full Text PDF–355K
In Vitro Study of Lipid Biosynthesis in an Anaerobically Methane-Oxidizing Microbial Mat
Martin Blumenberg, Richard Seifert, Katja Nauhaus, Thomas Pape, Walter Michaelis
Appl Environ Microbiol. 2005 August; 71(8): 4345–4351. doi: 10.1128/AEM.71.8.4345-4351.2005
PMCID:
PMC1183335
Abstract Full Text PDF–213K
Responses of Baltic Sea Ice and Open-Water Natural Bacterial Communities to Salinity Change
Hermanni Kaartokallio, Maria Laamanen, Kaarina Sivonen
Appl Environ Microbiol. 2005 August; 71(8): 4364–4371. doi: 10.1128/AEM.71.8.4364-4371.2005
PMCID:
PMC1183304
Abstract Full Text PDF–253K
Shewanella oneidensis MR-1 Uses Overlapping Pathways for Iron Reduction at a Distance and by Direct Contact under Conditions Relevant for Biofilms
Douglas P. Lies, Maria E. Hernandez, Andreas Kappler, Randall E. Mielke, Jeffrey A. Gralnick, Dianne K. Newman
Appl Environ Microbiol. 2005 August; 71(8): 4414–4426. doi: 10.1128/AEM.71.8.4414-4426.2005
PMCID:
PMC1183279
Abstract Full Text PDF–346K
Isolation and Characterization of a Genetically Tractable Photoautotrophic Fe(II)-Oxidizing Bacterium, Rhodopseudomonas palustris Strain TIE-1
Yongqin Jiao, Andreas Kappler, Laura R. Croal, Dianne K. Newman
Appl Environ Microbiol. 2005 August; 71(8): 4487–4496. doi: 10.1128/AEM.71.8.4487-4496.2005
PMCID:
PMC1183355
Abstract Full Text PDF–474K
Isolation and Characterization of a Novel Single-Stranded RNA Virus Infectious to a Marine Fungoid Protist, Schizochytrium sp. (Thraustochytriaceae, Labyrinthulea)
Yoshitake Takao, Keizo Nagasaki, Kazuyuki Mise, Tetsuro Okuno, Daiske Honda
Appl Environ Microbiol. 2005 August; 71(8): 4516–4522. doi: 10.1128/AEM.71.8.4516-4522.2005
PMCID:
PMC1183295
Abstract Full Text PDF–408K
Low Intraspecific Diversity in a Polynucleobacter Subcluster Population Numerically Dominating Bacterioplankton of a Freshwater Pond
Martin W. Hahn, Matthias Pöckl, Qinglong L. Wu
Appl Environ Microbiol. 2005 August; 71(8): 4539–4547. doi: 10.1128/AEM.71.8.4539-4547.2005
PMCID:
PMC1183363
Abstract Full Text PDF–217K
Methanogen Diversity Evidenced by Molecular Characterization of Methyl Coenzyme M Reductase A (mcrA) Genes in Hydrothermal Sediments of the Guaymas Basin
Ashita Dhillon, Mark Lever, Karen G. Lloyd, Daniel B. Albert, Mitchell L. Sogin, Andreas Teske
Appl Environ Microbiol. 2005 August; 71(8): 4592–4601. doi: 10.1128/AEM.71.8.4592-4601.2005
PMCID:
PMC1183284
Abstract Full Text PDF–672K
16S rRNA Sequences and Differences in Bacteria Isolated from the Muztag Ata Glacier at Increasing Depths
Shurong Xiang, Tandong Yao, Lizhe An, Bingliang Xu, Junxia Wang
Appl Environ Microbiol. 2005 August; 71(8): 4619–4627. doi: 10.1128/AEM.71.8.4619-4627.2005
PMCID:
PMC1183274
Abstract Full Text PDF–472K
Diurnal Variation of Cell Proliferation in Three Bacterial Taxa from Coastal North Sea Waters
Annelie Pernthaler, Jakob Pernthaler
Appl Environ Microbiol. 2005 August; 71(8): 4638–4644. doi: 10.1128/AEM.71.8.4638-4644.2005
PMCID:
PMC1183367
Abstract Full Text PDF–186K
Genetic Diversity of Viable, Injured, and Dead Fecal Bacteria Assessed by Fluorescence-Activated Cell Sorting and 16S rRNA Gene Analysis
Kaouther Ben-Amor, Hans Heilig, Hauke Smidt, Elaine E. Vaughan, Tjakko Abee, Willem M. de Vos
Appl Environ Microbiol. 2005 August; 71(8): 4679–4689. doi: 10.1128/AEM.71.8.4679-4689.2005
PMCID:
PMC1183343
Abstract Full Text PDF–525K
Cultivation of Mesophilic Soil Crenarchaeotes in Enrichment Cultures from Plant Roots
Holly M. Simon, Courtney E. Jahn, Luke T. Bergerud, Marek K. Sliwinski, Paul J. Weimer, David K. Willis, Robert M. Goodman
Appl Environ Microbiol. 2005 August; 71(8): 4751–4760. doi: 10.1128/AEM.71.8.4751-4760.2005
PMCID:
PMC1183331
Abstract Full Text PDF–401K
Culturability and Coexistence of Colony-Forming and Single-Cell Marine Bacterioplankton
Karin Simu, Karin Holmfeldt, Ulla Li Zweifel, Åke Hagström
Appl Environ Microbiol. 2005 August; 71(8): 4793–4800. doi: 10.1128/AEM.71.8.4793-4800.2005
PMCID:
PMC1183315
Abstract Full Text PDF–542K
Optically Transparent Porous Medium for Nondestructive Studies of Microbial Biofilm Architecture and Transport Dynamics
Andrew P. Leis, Sven Schlicher, Hilmar Franke, Martin Strathmann
Appl Environ Microbiol. 2005 August; 71(8): 4801–4808. doi: 10.1128/AEM.71.8.4801-4808.2005
PMCID:
PMC1183365
Abstract Full Text PDF–660K
Composition and Structure of Microbial Communities from Stromatolites of Hamelin Pool in Shark Bay, Western Australia
Dominic Papineau, Jeffrey J. Walker, Stephen J. Mojzsis, Norman R. Pace
Appl Environ Microbiol. 2005 August; 71(8): 4822–4832. doi: 10.1128/AEM.71.8.4822-4832.2005
PMCID:
PMC1183352
Abstract Full Text PDF–1.3M
Correlation of Campylobacter Bacteriophage with Reduced Presence of Hosts in Broiler Chicken Ceca
R. J. Atterbury, E. Dillon, C. Swift, P. L. Connerton, J. A. Frost, C. E. R. Dodd, C. E. D. Rees, I. F. Connerton
Appl Environ Microbiol. 2005 August; 71(8): 4885–4887. doi: 10.1128/AEM.71.8.4885-4887.2005
PMCID:
PMC1183290
Abstract Full Text PDF–57K
Habits of Magnetosome Crystals in Coccoid Magnetotactic Bacteria
Ulysses Lins, Martha R. McCartney, Marcos Farina, Richard B. Frankel, Peter R. Buseck
Appl Environ Microbiol. 2005 August; 71(8): 4902–4905. doi: 10.1128/AEM.71.8.4902-4905.2005
PMCID:
PMC1183320
Abstract Full Text PDF–323K
Identification of Acyl-Homoserine Lactone Signal Molecules Produced by Nitrosomonas europaea Strain Schmidt
E. O. Burton, H. W. Read, M. C. Pellitteri, W. J. Hickey
Appl Environ Microbiol. 2005 August; 71(8): 4906–4909. doi: 10.1128/AEM.71.8.4906-4909.2005
PMCID:
PMC1183371
Abstract Full Text PDF–170K
Distribution of the ermG Gene among Bacterial Isolates from Porcine Intestinal Contents
Yanping Wang, Gui-Rong Wang, Nadja B. Shoemaker, Terence R. Whitehead, Abigail A. Salyers
Appl Environ Microbiol. 2005 August; 71(8): 4930–4934. doi: 10.1128/AEM.71.8.4930-4934.2005
PMCID:
PMC1183278
Abstract Full Text PDF–109K
Food Microbiology
Inhibition of Clostridium perfringens by a Novel Strain of Bacillus subtilis Isolated from the Gastrointestinal Tracts of Healthy Chickens
Alex Yeow-Lim Teo, Hai-Meng Tan
Appl Environ Microbiol. 2005 August; 71(8): 4185–4190. doi: 10.1128/AEM.71.8.4185-4190.2005
PMCID:
PMC1183296
Abstract Full Text PDF–182K
Study of Adhesion and Survival of Lactobacilli and Bifidobacteria on Table Olives with the Aim of Formulating a New Probiotic Food
Paola Lavermicocca, Francesca Valerio, Stella Lisa Lonigro, Maria De Angelis, Lorenzo Morelli, Maria Luisa Callegari, Carlo G. Rizzello, Angelo Visconti
Appl Environ Microbiol. 2005 August; 71(8): 4233–4240. doi: 10.1128/AEM.71.8.4233-4240.2005
PMCID:
PMC1183302
Abstract Full Text PDF–333K
Discrimination of Enterobacterial Repetitive Intergenic Consensus PCR Types of Campylobacter coli and Campylobacter jejuni by Fourier Transform Infrared Spectroscopy
D. J. M. Mouwen, M. J. B. M. Weijtens, R. Capita, C. Alonso-Calleja, M. Prieto
Appl Environ Microbiol. 2005 August; 71(8): 4318–4324. doi: 10.1128/AEM.71.8.4318-4324.2005
PMCID:
PMC1183312
Abstract Full Text PDF–148K
Lactobacillus oligofermentans sp. nov., Associated with Spoilage of Modified-Atmosphere-Packaged Poultry Products
Joanna Koort, Anna Murros, Tom Coenye, Susanna Eerola, Peter Vandamme, Antti Sukura, Johanna Björkroth
Appl Environ Microbiol. 2005 August; 71(8): 4400–4406. doi: 10.1128/AEM.71.8.4400-4406.2005
PMCID:
PMC1183308
Abstract Full Text PDF–328K
Concurrent Quantitation of Total Campylobacter and Total Ciprofloxacin-Resistant Campylobacter Loads in Rinses from Retail Raw Chicken Carcasses from 2001 to 2003 by Direct Plating at 42°C
Ramakrishna Nannapaneni, Robert Story, Keith C. Wiggins, Michael G. Johnson
Appl Environ Microbiol. 2005 August; 71(8): 4510–4515. doi: 10.1128/AEM.71.8.4510-4515.2005
PMCID:
PMC1183281
Abstract Full Text PDF–134K
Genetic Analysis of Two Bile Salt Hydrolase Activities in Lactobacillus acidophilus NCFM
Olivia McAuliffe, Raul J. Cano, Todd R. Klaenhammer
Appl Environ Microbiol. 2005 August; 71(8): 4925–4929. doi: 10.1128/AEM.71.8.4925-4929.2005
PMCID:
PMC1183333
Abstract Full Text PDF–140K
Plant Microbiology
Impact of Plant Species and Site on Rhizosphere-Associated Fungi Antagonistic to Verticillium dahliae Kleb.
Gabriele Berg, Christin Zachow, Jana Lottmann, Monika Götz, Rodrigo Costa, Kornelia Smalla
Appl Environ Microbiol. 2005 August; 71(8): 4203–4213. doi: 10.1128/AEM.71.8.4203-4213.2005
PMCID:
PMC1183293
Abstract Full Text PDF–339K
Expression of Nitrite and Nitric Oxide Reductases in Free-Living and Plant-Associated Agrobacterium tumefaciens C58 Cells
Seung-Hun Baek, James P. Shapleigh
Appl Environ Microbiol. 2005 August; 71(8): 4427–4436. doi: 10.1128/AEM.71.8.4427-4436.2005
PMCID:
PMC1183285
Abstract Full Text PDF–239K Supplementary Material
Elevated Temperature Enhances Virulence of Erwinia carotovora subsp. carotovora Strain EC153 to Plants and Stimulates Production of the Quorum Sensing Signal, N-Acyl Homoserine Lactone, and Extracellular Proteins
H. Hasegawa, A. Chatterjee, Y. Cui, A. K. Chatterjee
Appl Environ Microbiol. 2005 August; 71(8): 4655–4663. doi: 10.1128/AEM.71.8.4655-4663.2005
PMCID:
PMC1183306
Abstract Full Text PDF–338K
Nonpathogenic Strains of Colletotrichum lindemuthianum Trigger Progressive Bean Defense Responses during Appressorium-Mediated Penetration
Claire Veneault-Fourrey, Richard Laugé, Thierry Langin
Appl Environ Microbiol. 2005 August; 71(8): 4761–4770. doi: 10.1128/AEM.71.8.4761-4770.2005
PMCID:
PMC1183332
Abstract Full Text PDF–762K
Multilocus Simple Sequence Repeat Markers for Differentiating Strains and Evaluating Genetic Diversity of Xylella fastidiosa
Hong Lin, Edwin L. Civerolo, Rong Hu, Samuel Barros, Marta Francis, M. Andrew Walker
Appl Environ Microbiol. 2005 August; 71(8): 4888–4892. doi: 10.1128/AEM.71.8.4888-4892.2005
PMCID:
PMC1183328
Abstract Full Text PDF–136K
Transcriptome-Based Identification of the Sinorhizobium meliloti NodD1 Regulon
Delphine Capela, Sébastien Carrere, Jacques Batut
Appl Environ Microbiol. 2005 August; 71(8): 4910–4913. doi: 10.1128/AEM.71.8.4910-4913.2005
PMCID:
PMC1183327
Abstract Full Text PDF–68K
Invertebrate Microbiology
Functional Importance of Deletion Mutant Genotypes in an Insect Nucleopolyhedrovirus Population
Oihane Simón, Trevor Williams, Miguel López-Ferber, Primitivo Caballero
Appl Environ Microbiol. 2005 August; 71(8): 4254–4262. doi: 10.1128/AEM.71.8.4254-4262.2005
PMCID:
PMC1183314
Abstract Full Text PDF–184K
Effects of Bacteria on Artemia franciscana Cultured in Different Gnotobiotic Environments
Antonio Marques, Thi Dinh, Christos Ioakeimidis, Geert Huys, Jean Swings, Willy Verstraete, Jean Dhont, Patrick Sorgeloos, Peter Bossier
Appl Environ Microbiol. 2005 August; 71(8): 4307–4317. doi: 10.1128/AEM.71.8.4307-4317.2005
PMCID:
PMC1183358
Abstract Full Text PDF–106K
Structure and Topology of Microbial Communities in the Major Gut Compartments of Melolontha melolontha Larvae (Coleoptera: Scarabaeidae)
Markus Egert, Ulrich Stingl, Lars Dyhrberg Bruun, Bianca Pommerenke, Andreas Brune, Michael W. Friedrich
Appl Environ Microbiol. 2005 August; 71(8): 4556–4566. doi: 10.1128/AEM.71.8.4556-4566.2005
PMCID:
PMC1183286
Abstract Full Text PDF–644K
Aphid-Symbiotic Bacteria Cultured in Insect Cell Lines
A. C. Darby, S. M. Chandler, S. C. Welburn, A. E. Douglas
Appl Environ Microbiol. 2005 August; 71(8): 4833–4839. doi: 10.1128/AEM.71.8.4833-4839.2005
PMCID:
PMC1183350
Abstract Full Text PDF–447K
Methods
Development and Assessment of a Real-Time PCR Assay for Rapid and Sensitive Detection of a Novel Thermotolerant Bacterium, Lactobacillus thermotolerans, in Chicken Feces
Abu Sadeque Md. Selim, Piyanuch Boonkumklao, Teruo Sone, Apinya Assavanig, Masaru Wada, Atsushi Yokota
Appl Environ Microbiol. 2005 August; 71(8): 4214–4219. doi: 10.1128/AEM.71.8.4214-4219.2005
PMCID:
PMC1183300
Abstract Full Text PDF–171K
Bacteriophages May Bias Outcome of Bacterial Enrichment Cultures
Maite Muniesa, Anicet R. Blanch, Francisco Lucena, Juan Jofre
Appl Environ Microbiol. 2005 August; 71(8): 4269–4275. doi: 10.1128/AEM.71.8.4269-4275.2005
PMCID:
PMC1183318
Abstract Full Text PDF–179K
Enhanced Reactivity of Rhizopus oryzae Lipase Displayed on Yeast Cell Surfaces in Organic Solvents: Potential as a Whole-Cell Biocatalyst in Organic Solvents
Seizaburo Shiraga, Masayuki Kawakami, Masaji Ishiguro, Mitsuyoshi Ueda
Appl Environ Microbiol. 2005 August; 71(8): 4335–4338. doi: 10.1128/AEM.71.8.4335-4338.2005
PMCID:
PMC1183351
Abstract Full Text PDF–60K Supplementary Material
Use of Saccharomyces cerevisiae BLYES Expressing Bacterial Bioluminescence for Rapid, Sensitive Detection of Estrogenic Compounds
John Sanseverino, Rakesh K. Gupta, Alice C. Layton, Stacey S. Patterson, Steven A. Ripp, Leslie Saidak, Michael L. Simpson, T. Wayne Schultz, Gary S. Sayler
Appl Environ Microbiol. 2005 August; 71(8): 4455–4460. doi: 10.1128/AEM.71.8.4455-4460.2005
PMCID:
PMC1183329
Abstract Full Text PDF–194K
Rapid Detection of Enteroviruses in Small Volumes of Natural Waters by Real-Time Quantitative Reverse Transcriptase PCR
Jed A. Fuhrman, Xiaolin Liang, Rachel T. Noble
Appl Environ Microbiol. 2005 August; 71(8): 4523–4530. doi: 10.1128/AEM.71.8.4523-4530.2005
PMCID:
PMC1183282
Abstract Full Text PDF–286K
Suicide Polymerase Endonuclease Restriction, a Novel Technique for Enhancing PCR Amplification of Minor DNA Templates
Stefan J. Green, Dror Minz
Appl Environ Microbiol. 2005 August; 71(8): 4721–4727. doi: 10.1128/AEM.71.8.4721-4727.2005
PMCID:
PMC1183356
Abstract Full Text PDF–151K
Single-Nucleotide Polymorphism Phylotyping of Escherichia coli
Florence Hommais, Sabrina Pereira, Cécile Acquaviva, Patricia Escobar-Páramo, Erick Denamur
Appl Environ Microbiol. 2005 August; 71(8): 4784–4792. doi: 10.1128/AEM.71.8.4784-4792.2005
PMCID:
PMC1183324
Abstract Full Text PDF–584K Supplementary Material
Novel Approach to Quantitative Detection of Specific rRNA in a Microbial Community, Using Catalytic DNA
Hikaru Suenaga, Rui Liu, Yuko Shiramasa, Takahiro Kanagawa
Appl Environ Microbiol. 2005 August; 71(8): 4879–4884. doi: 10.1128/AEM.71.8.4879-4884.2005
PMCID:
PMC1183326
Abstract Full Text PDF–127K
Fluorophore-Labeled Primers Improve the Sensitivity, Versatility, and Normalization of Denaturing Gradient Gel Electrophoresis
Josh D. Neufeld, William W. Mohn
Appl Environ Microbiol. 2005 August; 71(8): 4893–4896. doi: 10.1128/AEM.71.8.4893-4896.2005
PMCID:
PMC1183338
Abstract Full Text PDF–197K
Insertional Inactivation of Determinants for Mg2+ and Co2+ Transport as a Tool for Screening Recombinant Lactococcus Species Clones
Susan Mills, Aidan Coffey, Colin Hill, Gerald F. Fitzgerald, Olivia McAuliffe, R. Paul Ross
Appl Environ Microbiol. 2005 August; 71(8): 4897–4901. doi: 10.1128/AEM.71.8.4897-4901.2005
PMCID:
PMC1183277
Abstract Full Text PDF–196K
Development of a Plasmid-Mediated Reporter System for In Vivo Monitoring of Gene Expression in the Archaeon Methanosarcina acetivorans
Ethel E. Apolinario, Karin M. Jackson, Kevin R. Sowers
Appl Environ Microbiol. 2005 August; 71(8): 4914–4918. doi: 10.1128/AEM.71.8.4914-4918.2005
PMCID:
PMC1183294
Abstract Full Text PDF–123K
Development of PCR Assays Targeting Genes in O-Antigen Gene Clusters for Detection and Identification of Escherichia coli O45 and O55 Serogroups
Chitrita DebRoy, Pina M. Fratamico, Elisabeth Roberts, Michael A. Davis, Yanhong Liu
Appl Environ Microbiol. 2005 August; 71(8): 4919–4924. doi: 10.1128/AEM.71.8.4919-4924.2005
PMCID:
PMC1183307
Abstract Full Text PDF–83K
Identification of Genes Involved in Cytochrome c Biogenesis in Shewanella oneidensis, Using a Modified mariner Transposon
R. Bouhenni, A. Gehrke, D. Saffarini
Appl Environ Microbiol. 2005 August; 71(8): 4935–4937. doi: 10.1128/AEM.71.8.4935-4937.2005
PMCID:
PMC1183303
Abstract Full Text PDF–89K
Biodegradation
Metabolism of the Aliphatic Nitramine 4-Nitro-2,4-Diazabutanal by Methylobacterium sp. Strain JS178
Diane Fournier, Sandra Trott, Jalal Hawari, Jim Spain
Appl Environ Microbiol. 2005 August; 71(8): 4199–4202. doi: 10.1128/AEM.71.8.4199-4202.2005
PMCID:
PMC1183330
Abstract Full Text PDF–92K
Correlation of Biological Activity and Reactor Performance in Biofiltration of Toluene with the Fungus Paecilomyces variotii CBS115145
Inés García-Peña, Sergio Hernández, Richard Auria, Sergio Revah
Appl Environ Microbiol. 2005 August; 71(8): 4280–4285. doi: 10.1128/AEM.71.8.4280-4285.2005
PMCID:
PMC1183337
Abstract Full Text PDF–111K
Evolutionary and Genomic Microbiology
Correlation of Phenotype with the Genotype of Egg-Contaminating Salmonella enterica Serovar Enteritidis
Cesar A. Morales, Steffen Porwollik, Jonathan G. Frye, Hailu Kinde, Michael McClelland, Jean Guard-Bouldin
Appl Environ Microbiol. 2005 August; 71(8): 4388–4399. doi: 10.1128/AEM.71.8.4388-4399.2005
PMCID:
PMC1183325
Abstract Full Text PDF–151K
Metagenomic Analysis Reveals Diverse Polyketide Synthase Gene Clusters in Microorganisms Associated with the Marine Sponge Discodermia dissoluta
Andreas Schirmer, Rishali Gadkari, Christopher D. Reeves, Fadia Ibrahim, Edward F. DeLong, C. Richard Hutchinson
Appl Environ Microbiol. 2005 August; 71(8): 4840–4849. doi: 10.1128/AEM.71.8.4840-4849.2005
PMCID:
PMC1183291
Abstract Full Text PDF–546K Supplementary Material
Articles from Applied and Environmental Microbiology are provided here courtesy of
American Society for Microbiology (ASM)