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Logo of jcinvestThe Journal of Clinical InvestigationCurrent IssueArchiveSubscriptionAbout the Journal
J Clin Invest. 2005 February 1; 115(2): 339–347.
Published online 2005 January 20. doi:  10.1172/JCI200523183
PMCID: PMC544606

Transcriptional activation of integrin β6 during the epithelial-mesenchymal transition defines a novel prognostic indicator of aggressive colon carcinoma


We used a spheroid model of colon carcinoma to analyze integrin dynamics as a function of the epithelial-mesenchymal transition (EMT), a process that provides a paradigm for understanding how carcinoma cells acquire a more aggressive phenotype. This EMT involves transcriptional activation of the β6 integrin subunit and a consequent induction of αvβ6 expression. This integrin enhances the tumorigenic properties of colon carcinoma, including activation of autocrine TGF-β and migration on interstitial fibronectin. Importantly, this study validates the clinical relevance of the EMT. Kaplan-Meier analysis of β6 expression in 488 colorectal carcinomas revealed a striking reduction in median survival time of patients with high β6 expression. Elevated receptor expression did not simply reflect increasing tumor stage, since log-rank analysis showed a more significant impact on the survival of patients with early-stage, as opposed to late-stage, disease. Cox regression analysis confirmed that this integrin is an independent variable for these tumors. These findings define the αvβ6 integrin as an important risk factor for early-stage disease and a novel therapeutic candidate for colorectal cancer.


A dynamic transition of epithelia into mesenchyme occurs during normal morphogenetic processes such as embryonic development, tissue remodeling, and wound repair by a process known as the epithelial-mesenchymal transition (EMT; reviewed in refs. 13). Of particular interest to cancer biologists is the emerging realization that the progression of epithelial-derived tumors (carcinomas) may also involve spatial or temporal occurrences of EMT (47), allowing carcinoma cells to acquire a more aggressive phenotype. This hypothesis is supported by the observation that molecules whose expression is altered during the EMT, such as E-cadherin, are often useful markers for prognosis. The mechanism of the EMT is complex and involves signals from the microenvironment, such as TGF-β, a well-characterized inducer of the process in a variety of in vitro and in vivo settings (5, 6). Although loss of E-cadherin may be a primal event for EMT, alterations in other adhesion mechanisms must occur to generate a mesenchymal phenotype. In this respect, the paradigm of an EMT is apt because an invasive carcinoma cell must acquire the ability to interact with distinct interstitial matrices subsequent to its transgression of the basement membrane. Accordingly, the integrin family of adhesion molecules represents the major receptors that mediate attachment to the ECM, with ligand occupancy triggering critical intracellular signaling pathways (8, 9). Surprisingly, however, little is known about how integrin expression and function are regulated during EMT.

Here, we have used our recently characterized in vitro model of EMT in colon carcinoma, which employs a multicellular, 3D spheroid cell system (10), to analyze integrin dynamics as a function of EMT. We report that the EMT induces a marked increase in the expression of the αvβ6 integrin, a receptor for fibronectin and tenascin. This increase is dependent on the transcriptional activation of the β6 integrin subunit mediated by Ets-1, a result that implicates this proto-oncogene as a key regulator of EMT. Further, the consequences of elevated αvβ6 expression are directly linked to both the mechanism of the EMT itself and the function of mesenchymal cells. The αvβ6 integrin promotes the activation of autocrine TGF-β that sustains the EMT and is also required for the migration of post-EMT cells on fibronectin. Moreover, this study validates our EMT model as a valuable tool for the identification of clinically relevant markers, as analysis of almost 500 colorectal carcinoma samples revealed that tumors with elevated αvβ6 expression are associated with a significantly reduced survival time of patients in comparison with tumors with no β6 expression or low β6 expression. Finally, our results define β6 expression as an independent prognostic variable for colorectal cancer and, most significantly, one that is predictive of outcome in early-stage disease.


Increased expression ofαvβ6 integrin accompanies EMT of LIM 1863 organoids.

We recently characterized a novel colon carcinoma model for EMT, in which the well-differentiated LIM 1863 cell line switches from a suspension culture of 3D spheroids (termed organoids) to a migratory monolayer phenotype following exposure to TGF-β (10). Further, we demonstrated that this bona fide EMT conversion was accelerated in response to a synergistic effect of TNF-α signaling (10). LIM 1863 organoids express 2 αv integrins, αvβ5 and αvβ6 (11), and the β5 subunit is expressed in excess of the β6 subunit (Figure (Figure1A).1A). Following induction of EMT, however, a striking increase in the surface expression of β6 occurs as assessed by surface labeling and immunoprecipitation with an αv antibody (Figure (Figure1A).1A). To verify the identity of β6, the αv immunoprecipitations were repeated and subjected to immunoblotting with a β6 antibody (Figure (Figure1B);1B); this confirmed that a dramatic induction of αvβ6 expression occurs during the EMT. No changes in αvβ5 expression were evident (data not shown). Flow cytometry revealed a greater–than–3-fold increase in β6 expression following the transition (Figure (Figure11C).

Figure 1
Integrin αvβ6 expression increases following EMT. (A) LIM 1863 organoids or cells harvested 24 hours after induction of EMT were surface biotinylated, and the extracts were immunoprecipitated with an mAb directed against integrin αv ...

The time course of β6 induction during the EMT was evaluated by immunoblotting (Figure (Figure1D).1D). Expression remained low during the first 3 hours, with an initial increase apparent at 6–12 hours and maximal expression seen at 24 hours. In contrast, expression of another cell surface receptor, the α6β4 integrin, remained unchanged over the same time course (data not shown). We then sought to determine whether this β6 upregulation occurs at the mRNA level using real-time quantitative PCR. As shown in Figure Figure1E,1E, we observed a greater–than–3-fold increase in mRNA level for β6 in post-EMT cells as compared with organoids, a result consistent with the flow cytometry data. Taken together, the data indicate that upregulation of the β6 integrin subunit mRNA and a consequent increase in αvβ6 expression occur during the EMT of LIM 1863 colon carcinoma cells.

Transcriptional control ofβ6 integrin by the Ets-1 transcription factor.

Although transcriptional regulation of the β6 integrin has not been studied, we reported recently that the expression and activity of the Ets-1 transcription factor are induced during the EMT (12). This proto-oncogene is a member of a family of transcription factors that regulate genes involved in development, cellular differentiation, and cell proliferation (13). Interestingly, we identified 4 potential consensus Ets-binding sites in the first 1 kb of the human β6 promoter (numbered 1–4, with 1 being most proximal to the transcription start site; Figure Figure2A).2A). To determine whether Ets-1 is capable of transactivating the β6 promoter, we performed luciferase assays with a number of Ets family members (Figure (Figure2B).2B). Ets-1 displayed a robust activation of the β6 promoter (greater than 2.5-fold), whereas none of the other family members tested showed any inducing effect. The closely related factor Ets-2, as well as Mef and NERF2, failed to activate the promoter to a greater degree than the PCI control did, while the others tested repressed activity (Figure (Figure2B).2B). Because all these family members bind the same core recognition sequence, this finding strongly argues for selectivity of Ets-1 in promoting β6 integrin transcription. To assess the relative contributions of each of these 4 potential regulatory sites, we performed gel shift assays. Ets-1 bound strongly to site 1, and no binding was evident for any of the other 3 more distal sequences (Figure (Figure2C).2C). To substantiate this result, we performed site-directed mutagenesis of the core recognition sequence GGAA to TTAA at this first site. When increasing doses of wild-type Ets-1 were titrated into the transcription assay, a clear dose-response effect of β6 promoter activity was observed (Figure (Figure2D).2D). In contrast, mutagenesis of site 1 completely abrogated any luciferase activity, independent of dose, thus confirming the specificity and importance of this Ets-1–binding site for regulating β6 transcription.

Figure 2
Transcriptional regulation of β6 by the Ets-1 transcription factor. (A) Schematic of the human integrin β6 promoter. The transcription start site (TSS) and translation start site (ATG) are indicated. Putative Ets-binding sites are shown ...

Elevatedαvβ6 expression promotes tumorigenic functions following EMT.

To ascribe a functional role for increased αvβ6 expression during the EMT, we focused initially on its classical role as a fibronectin receptor (14). Although LIM 1863 organoids are nonmotile (11), they are capable of undergoing chemotaxis following EMT (10). Indeed, using Transwells (Corning Inc.) coated with specific matrix proteins, we observed that post-EMT cells were significantly more chemotactic when the Transwells were coated with fibronectin than when they were not coated or were coated with laminin-1 (Figure (Figure3A).3A). This migration is mediated by αvβ6 and is not attributable to an alternative compensatory response of the post-EMT phenotype, since it was inhibited by a function-blocking β6 antibody (Figure (Figure3B).3B). These data indicate that induction of αvβ6-mediated migration on fibronectin is a consequence of the EMT of LIM 1863 cells.

Figure 3
Increased αvβ6 expression promotes migration on fibronectin. (A) Chemotactic migration assay of post-EMT LIM 1863 cells for 3 days on untreated control Transwells (Con), or Transwells coated with laminin (Lm) or fibronectin (Fn). Data ...

TGF-β is a central mediator of the EMT process (5, 6, 15), and it is the exogenous application of this cytokine that drives the EMT in the LIM 1863 spheroid model (10). Unexpectedly, we discovered that LIM 1863 cells undergoing EMT exhibit autocrine expression and secretion of TGF-β (Figure (Figure4A).4A). Organoids or cytokine-treated cells were seeded for 7 hours in RPMI medium supplemented with 5% FCS, washed 3 times with serum-free medium to remove the endogenous TGF-β present in serum, and then cultured for an additional 17 hours. Serum-free media contained no TGF-β, whereas the final of the 3 washes contained background levels derived from the FCS (Figure (Figure4A).4A). TGF-β production by intact organoids was negligible compared with the residual TGF-β levels of the controls. In contrast, post-EMT cells secreted high levels of TGF-β, confirming the existence of autonomous TGF-β production in these cells.

Figure 4
Autocrine TGF-β production and activation by αvβ6 in EMT cells. (A) ELISA was performed to measure secreted TGF-β levels in serum-free media (Media), media after washing (Wash), or overnight culture media from organoid ...

TGF-β family members are secreted as latent complexes that require activation in order to bind their receptors, and an essential role for αvβ6 to bind and activate latent TGF-β has emerged (16). Therefore we assessed whether the αvβ6 induced during the EMT is capable of activating TGF-β, by coculturing intact organoids or post-EMT cells with mink lung epithelial reporter cells stably expressing a portion of the plasminogen activator inhibitor 1 promoter, as described previously (16, 17). Coculture with the post-EMT cells caused a significant increase in luciferase levels compared with coculture with control (organoid) cells (Figure (Figure4B).4B). Significantly, this increase was abolished by a function-blocking mAb against β6 (3G9), which indicates that this effect is completely attributable to the increased expression of αvβ6 receptor on these cells. Taken together, these results show that LIM 1863 cells induced to undergo an EMT not only produce an autocrine supply of TGF but also have the capacity to process and activate the latent form of the cytokine using the αvβ6 integrin.

EMT andαvβ6 expression in vivo.

Having found that upregulation of αvβ6 is a consequence of the EMT process in vitro, we sought to establish a relationship among EMT, β6 expression, and tumor progression in vivo. To achieve this, LIM 1863 xenograft tumors were grown s.c. in nude mice, before immunohistochemical analysis of relevant markers. As expected, these organoid-derived tumors stained only weakly for β6 (Figure (Figure5A).5A). However, there was a dramatic induction of β6 expression in localized regions of the tumors, such as is shown in Figure Figure5A,5A, and in particular on tumor cells that were invading the stroma. Thus, tumor cells that were migrating out from an invasive front displayed a clear increase in receptor expression. Significantly, when a sequential tumor section was stained for E-cadherin, the in situ tumor cells were strongly positive, whereas the invading cells had completely lost expression of this molecule (Figure (Figure5B).5B). Based on our model, we conclude that the invading cells had undergone an EMT in vivo (most likely the result of stromal factors), resulting in loss of the epithelial marker E-cadherin and a concomitant upregulation of β6. These morphological data not only support our hypothesis that elevated β6 expression facilitates the invasion and dissemination of colon carcinoma cells but also provide direct evidence that the EMT correlates with disease progression.

Figure 5
The integrin αvβ6 is a marker of EMT in vivo. Integrin β6 (A) or E-cadherin (B) immunostaining of sequential tumor sections derived from LIM 1863 xenografts. E-cadherin expression is prominent in the tumor tissue (T) and absent ...

Highαvβ6 expression in human colon carcinoma is a prognostic indicator of poor survival.

Based on our EMT data, we predicted that the frequency of αvβ6 expression in human disease is skewed toward late-stage, more aggressive tumors, rather than adenomas and in situ carcinomas. To examine this postulate, we performed immunohistochemistry on tissue arrays of malignant colorectal tumors with known clinical outcome (Figure (Figure6).6). Table Table11 summarizes the patient characteristics for 488 successfully stained primary carcinoma samples, of which 181 (37%) were positive for β6 expression. The median age of patients was 68 years, with a range from 23 to 94. For subsequent analysis, the staining intensity of β6 was scored as 0, 1, or 2. Of the 488 samples, 307 (63%) were negative (score 0), 95 (19%) exhibited low expression (score 1), and 86 (18%) exhibited high expression (score 2) (Table (Table11).

Figure 6
Expression of αvβ6 in malignant human colon carcinoma. (AE) Representative β6 immunostaining of normal human colon (A) or malignant colon carcinoma tissue (BE). A negative (B) and a positive (C) tumor sample are ...
Table 1
Patient characteristics

Normal colonic mucosa did not exhibit any staining for β6 (Figure (Figure6A).6A). A tumor sample negative for β6 expression is shown in Figure Figure6B,6B, and, in contrast, an example of strong immunoreactivity of β6 expression (score 2) is shown in Figure Figure6C.6C. Consistent with the hypothesis that αvβ6 expression occurs as a function of tumor progression, high β6 expression was detected in the more poorly differentiated infiltrating tumor cells invading through desmoplastic stroma (Figure (Figure6D).6D). Heterogeneous distribution patterns were frequently observed (e.g., Figure Figure6E)6E) that displayed an intense upregulation and preferential localization of the integrin at the edges of infiltrating tumor islands. A sequential serial section of this particular tumor was used as a negative control (Figure (Figure66F).

We then examined whether there was an association between αvβ6 expression and patient survival. We analyzed the data by considering only disease-related death as an event, censoring deaths unrelated to disease and the patients who were alive when they were last seen. To determine differences in the cancer survival among patients who differed in αvβ6 expression (scores 0–2), the log-rank test was performed, and the corresponding Kaplan-Meier plot is shown in Figure Figure7.7. The log-rank test indicated there was no significant survival difference between patients with score 0 and patients with score 1 (P = 0.99). There was, however, a significant difference between patients with score 0 and patients with score 2 (P = 0.048), and between patients with score 0 or 1 and patients with score 2 (P = 0.04). Further, the Kaplan-Meier plot showed that patients with score 0 or 1 (i.e., either no expression or low expression of β6) had longer survival times than patients with score 2 (high expression of β6). For this reason, we combined the patients with a score of 0 or 1 in the data set and compared their survival with that of the patients with score 2. The survival estimates showed a striking difference in median survival between the 2 groups: the group with a score of 0 or 1 averaged 16.5 years, whereas that with a score of 2 averaged less than 5 years and showed a 15% lower 5-year survival rate (Table (Table2).2). From a biological perspective, we conclude that elevated expression of αvβ6 is a prognostic indicator of poor survival for patients with colorectal carcinoma. This key finding substantiates the data predicted by the spheroid model.

Figure 7
Kaplan-Meier survival analysis using a log-rank test. The samples were grouped according to β6 expression level (score 0, negative; score 1, low expression; score 2, high expression) and analyzed using the log-rank test for overall survival.
Table 2
Survival estimates for disease-related deaths

The log-rank results suggested a significant interaction between the effects of score and stage, and it was possible that the survival effects of β6 simply correlated with the degree of invasion. For this reason, we separated the expression data by stage, either early (stages 1 and 2) or late (stages 3 and 4) (Table (Table2).2). For patients with stage 3 or 4 tumors, high expression of β6 resulted in a minor (4–5%), not significant, reduction in both 5- and 10-year survival rates. In stark contrast, elevated β6 expression had a much more significant impact on the survival of those patients with early-stage tumors (P = 0.0015), highlighted by a greater-than-28% reduction in 5-year survival compared with that of patients with no expression or low expression. Importantly, these data define β6 expression as an independent prognostic variable for colorectal cancer that is predictive of outcome in early-stage disease.

Based on the above findings, the proportional hazard ratio model was used to obtain more precise estimates of the effects of β6 expression on survival by adjusting for the effects of age, sex, stage, and tumor type. Table Table33 summarizes the χ2 P values, the hazard ratios, and the 95% confidence interval of hazard ratio, for all variables. Again, when score 0 and 1 patients (no expression or low expression) were compared with score 2 patients (high expression), the P value of 0.007 revealed a significant difference in survival. As expected, the standard prognostic indicators of tumor stage and age at detection each showed significant effects on survival. Significantly, the hazard ratio of 1.6 for elevated β6 expression indicated that the hazard of dying was 60% higher in patients with score 2 than in patients with score 0 or 1. This result confirmed the findings of the log-rank test in identifying β6 expression as an independent variable and, importantly, suggested that high β6 expression in colon tumors represented a significant risk factor for patient survival.

Table 3
Multivariate analysis for disease-related deaths (Cox regression model)

Expression ofαvβ6 in human colon cancer metastases.

In Figure Figure88 we provide evidence of αvβ6 expression in human colon carcinoma metastases as assessed by immunohistochemistry on lymph nodes and liver specimens obtained from patients with colorectal cancer. Infiltrating colon carcinoma cells were easily discernible by H&E staining of a section of lymph node from a patient with invasive colon cancer (Figure (Figure8A).8A). β6 Staining of the same tissue showed strong immunoreactivity in the tumor cells, while the lymphatic cells of the organ were negative, as expected (Figure (Figure8B).8B). To define receptor expression in more distal organs, we stained metastatic lesions in randomly selected liver biopsies (Figure (Figure8,8, C and D). The colonic metastases were readily distinguished from the hepatic tissue by H&E staining (Figure (Figure8C),8C), and these tumor cells again displayed strong β6 staining (Figure (Figure8D;8D; 3 of 4 cases). Negative-control tissue staining showed no immunoreactivity, as expected (data not shown). The demonstration of αvβ6 expression in distal metastases supports our conclusion that αvβ6 expression in colorectal cancer correlates with disease progression and poorer clinical outcome.

Figure 8
In vivo αvβ6 protein expression in human colorectal metastases. Representative H&E (A and C) or β6 immunohistochemistry (B and D) in lymph node (A and B) or liver tissue (C and D) containing human colorectal metastases. ...


The progression to invasive and metastatic carcinoma involves profound alterations in epithelial structure and function. We show here that the EMT of colon carcinoma is coincident with an increase in αvβ6 integrin expression, and the culmination of our observations is that high expression of β6 in primary colon carcinomas is a prognostic marker for aggressive disease and patient mortality. This integrin is expressed primarily during development, and high αvβ6 expression in adults is limited only to a few epithelial tissues (18, 19). However, αvβ6 can be reexpressed in parallel with specific morphogenetic events such as inflammation and wound healing (19). Wound healing, in particular, is believed to involve EMT processes, and the induction of αvβ6 implies a central role for the receptor (1921). In addition, several studies have shown neo-expression of αvβ6 in oral squamous cell carcinomas (19, 22, 23), although a link between expression and patient outcome has not been established. Nonetheless, these studies are consistent with our observation that αvβ6 expression is induced as a consequence of EMT. Interestingly, studies on the phenotypic changes induced by the EMT have traditionally focused on the transcriptional repression of epithelial markers that maintain tissue polarity, such as E-cadherin, and the functional consequences of induced mesenchymal markers. Our discovery that an epithelial integrin is dynamically regulated during the EMT of colon carcinoma, and specifically one that is upregulated during development, is consistent with the long-standing hypothesis that colorectal carcinogenesis more accurately reflects a dedifferentiation of epithelia to a more embryonic phenotype.

The induction of αvβ6 expression that we observed during the EMT is dependent on the transcriptional upregulation of the β6 integrin subunit. The transcriptional regulation of β6 had not been investigated previously to our knowledge, and it now appears that Ets-1 may be a key transcription factor that influences EMT. In fact, we have recently reported that Ets-1 expression is upregulated as a consequence of the EMT, and that it is responsible for the induction of the VEGF receptor Flt-1 (12). A functional role for Ets-1 in β6 regulation was evidenced by its ability to bind and transactivate the human β6 promoter. Our screening identified 4 putative consensus sites within the first kilobase of the promoter sequence, but only the first site appeared to be of importance. Ets-1 bound preferentially to this site in gel shift assays, and, most significantly, site-directed mutagenesis of this region completely abrogated transactivation activity. Since Ets-1 typically exerts its effects in cooperation with other transcriptional factors and cofactors, we are currently seeking to identify other regulators of β6 transcription. The role, if any, of the other 3 consensus sites also awaits further characterization. Although they appear dispensable for β6 regulation during the EMT process, the possibility exists that alternate triggers, or tissue-specific factors, might act to influence β6 gene regulation via these sites.

We define 2 key functions of αvβ6 that can be linked to the biology of aggressive colon carcinoma: activation of autocrine TGF-β, and promotion of migration on fibronectin matrices. Firstly, TGF-β has been proposed to act as a cell-autonomous promoter of late-stage human tumor development because of its ability to regulate EMT (5). In this context, the autocrine TGF-β production we observed would provide the means to stabilize and sustain the EMT by continuous TGF-β receptor signaling in a cell-autonomous fashion. However, it is the ability of αvβ6 to activate autocrine TGF-β in post-EMT cells that is most novel with respect to colon carcinoma progression. The recognition that this integrin can bind and activate latent TGF-β (16) identified a likely role for this receptor in contributing to the onset of TGF-β–mediated diseases, such as inflammation and fibrosis (24, 25). From our perspective, induced expression of αvβ6 in colon carcinoma would provide a mechanism to locally regulate TGF-β function in vivo, to provide a feedback loop to perpetuate the EMT process, and, in turn, to create a tumor microenvironment more amenable to progression. Indeed, the morphological analysis of the xenografts (Figure (Figure5)5) provides in vivo evidence for this concept.

Secondly, having a specific fibronectin receptor elicited as a consequence of the EMT also has selective advantages for tumor cells. The colonic epithelium resides upon a basement membrane, composed primarily of laminins, collagen IV, and proteoglycans, which provides an interface with the lamina propria beneath (26). The structural composition of this zone differs in its high fibrillar collagen content, and also in enrichment with fibronectin and tenascin, both ligands for αvβ6 (14, 27). Thus, an enhanced migratory capacity on fibronectin would facilitate the escape and dissemination of invading colon carcinoma cells into the lamina propria. Moreover, αvβ6 expression and fibronectin recognition may also be important for colonization of the liver, the primary site for metastases derived from colorectal tumors. In addition to the anatomical consideration that portal blood flow from the colon goes directly to this organ, our data suggest that there may be an additional dimension to colonization that specifically involves αvβ6. Since there is no basement membrane under the endothelium of liver microvessels as in other tissues, it has been suggested that adhesion to fibronectin may be of central importance for liver metastasis, because it is abundant on the surface of hepatocytes (28). We propose, therefore, that an increased propensity to adhere to fibronectin would promote colon carcinoma metastasis to the liver by aiding extravasation.

The key conclusion of this study relates to the expression of αvβ6 in human colorectal cancer. We identified this receptor as a marker of aggressive carcinoma, in part based on its high frequency of expression (almost 40%) in malignant tumors. Additional compelling evidence for the involvement of αvβ6 in tumor progression is provided by our demonstration of β6 expression in both lymphatic and hepatic metastases derived from human colorectal carcinomas. However, the result of greatest consequence is that analysis of the clinical data revealed that elevated β6 expression, rather than the simple presence or absence of the receptor, is linked to significantly reduced survival times. Even more striking was the discovery that its value as a prognostic marker is more significant for early-stage tumors. It is likely that the effects of β6 expression on late-stage tumors are masked by additional genetic and epigenetic alterations. However, based on our results, it is tempting to speculate that the EMT process can contribute directly to tumor progression and development of metastatic disease, and that αvβ6 represents a novel marker for this event. Moreover, the hazard ratio analysis confirmed that this receptor is a stand-alone variable, similar to those of stage and age at diagnosis, for colorectal tumors, and indicated that high expression of this integrin is an independent and important risk factor for patient survival. Overall, these findings establish αvβ6 as a novel prognostic indicator for human colon cancer and validate our EMT model as a valuable tool for the identification of clinically relevant markers.

Finally, a potentially important consequence of our work is that αvβ6 may be an attractive therapeutic candidate for colon cancer and, in particular, that it may be possible to selectively target invading and metastasizing cells. Furthermore, because elevated β6 expression is predictive of outcome in early-stage disease, it may also be a feasible target for earlier intervention and treatment. Targeting integrin function has emerged as a legitimate therapeutic strategy for several disease types. In this regard, the current development and characterization of function-blocking anti-β6 antibodies (29) offer the promise of new reagents and novel treatments not only for diseases such as fibrosis but also, in light of the findings presented here, for aggressive colorectal cancer.


Cell culture and EMT induction.

LIM 1863 cells (11, 30) were grown as organoids in RPMI 1640 (GIBCO; Invitrogen Corp.) supplemented with 5% FCS. To induce the EMT, LIM 1863 cells were seeded in 24-well plates with a combination of TNF-α (10 ng/ml) and TGF-β1 (2 ng/ml) for 24 hours (10). Morphological changes in the organoids were assessed by phase-contrast microscopy. The cell line HEK293 (human embryonic kidney) was grown in DMEM supplemented with 10% FCS and antibiotics (penicillin and streptomycin) (GIBCO; Invitrogen Corp.). Mink lung epithelial cells stably transfected with a plasmid containing the luciferase cDNA downstream of a TGF-β–sensitive portion of the plasminogen activator inhibitor 1 promoter were grown in DMEM supplemented with 4.5 g/l glucose and 10% FCS.


The murine mAb directed against αv integrin, 13C2, was a kind gift from M. Horton (Imperial Cancer Research Fund, London, United Kingdom). The anti-β6 mAbs 3G9 and 2G2 were obtained from S. Violette (Biogen Idec, Cambridge, Massachusetts, USA), and the specificity of these antibodies has recently been reported (29). The anti-β6 antibody CSβ6 and function-blocking monoclonal 10D5 were purified in our laboratories, and control mouse Igs were purchased from Sigma-Aldrich. The polyclonal E-cadherin antibody (H-108) was purchased from Santa Cruz Biotechnology Inc.

Real-time quantitative PCR.

Real-time quantitative PCR was performed on RNA samples that were first reverse-transcribed and then treated with DNase. The primers and probes (listed below) were designed using Primer Express software version 1.0 (Applied Biosystems), based on mRNA sequences obtained from the National Center for Biotechnology Information database (31). All reactions were performed in an ABI PRISM 7700 Sequence Detection System (PerkinElmer Applied Biosystems). Reactions were carried out in triplicate in a 50-μl reaction volume containing 25 μl of 2× TaqMan PCR Master Mix, a 50-nM concentration of each forward and reverse primer, a 100-nM concentration of dual-labeled probe, and 1 μg of total cDNA. Conditions for all PCR reactions were 2 minutes at 50°C and 10 minutes at 95°C, followed by 40 cycles of 95°C for 10 seconds and 60°C for 1 minute. Normalization to actin (housekeeping gene) was performed for each sample. Cycle threshold values were exported into an Excel (Microsoft Corp.) worksheet for calculation of fold changes according to the °°CT method. The primers and dual-labeled probe (TET/TAMRA) were as follows: β6 integrin sense, 5′-CTACCTGTGGTGACCCCTGTAAC-3′; β6 integrin antisense, 5′-GCTTGGCCAGCTGCTGAC-3′; β6 integrin probe, 5′/5TET/CTAAACGGAGCTGCATTGAGTGCCACC/36-TAM/3′.

Expression vector and luciferase reporter gene constructs.

An 1,134-bp fragment corresponding to nucleotides –926 to +208 of the human ITGβ6 promoter was cloned from human genomic DNA (BD Biosciences — Clontech) by PCR and subcloned into the pGL2 luciferase reporter vector (Promega Corp.). The fragment was inserted into the NheI-XhoI site upstream of the luciferase gene of the pGL2 vector.

DNA transfection assays.

Cotransfections of 2.5 × 105 HEK293 cells were carried out with varying amounts of reporter gene construct DNA and expression vector DNA using 4 μl LipofectAMINE (Invitrogen Corp.) as previously described (32). The cells were harvested 16 hours after transfection and assayed for luciferase activity. Transfections for every construct were performed independently and in duplicate. Cotransfection of a second plasmid for determination of transfection efficiency was omitted, because potential artifacts with this technique have been reported and because many commonly used viral promoters contain potential binding sites for Ets factors (33).

Site-directed mutagenesis.

Site-directed mutagenesis of the ITGβ6 was performed using the QuikChange Site-Directed Mutagenesis Kit (Stratagene) according to the manufacturer’s recommendations. In brief, PCR primers encoding the ITGβ6 promoter Ets site, –66 to –63, and flanking sequences were used, with TTAA substituted for GGAA (mutation underlined): 5′-AACATGATTTACTTAATTGTTCTCCTTATAAGGAAGGCAGG-3′ and 3′-CCTGCCTTCCTTATAAGGAGAACAATTAAGTAAATCATGTT-5′. PCR was performed with PfuTurbo polymerase (Stratagene) using the wild-type ITGβ6 promoter luciferase reporter construct as a template. The PCR reaction was digested with DpnI, and the undigested plasmids were transformed into DH5α bacteria. Individual plasmid preparations were sequenced to verify incorporation of the Ets site mutation.

Electrophoretic mobility shift assay.

Electrophoretic mobility shift assays were performed as described previously (34). In brief, 2 μl of in vitro translation product and 0.1–0.2 ng [32P]dATP-labeled double-stranded oligonucleotide probes (5,000–20,000 cpm) were run on 4% polyacrylamide gels containing 0.5× Tris-Borate-EDTA buffer. Oligonucleotides used as probes were as follows (Ets consensus binding site underlined): human ITGβ6 promoter site –73 to –51, 5′-AGAACAAGGAAGTAAATCATGTT-3′ and 3′-AACATGATTTACTTCCTTGTTCT-5′.

Immunoprecipitation and immunoblot analysis.

To assess β6 integrin protein levels, cells were extracted in a Triton X lysis buffer (1% Triton X-100, 50 mM Tris, 150 mM NaCl) containing protease inhibitors (pepstatin, PMSF, aprotinin, and leupeptin) for 1 hour. Extracts were clarified by centrifugation. For immunoprecipitations, the lysates were precleared twice with anti-mouse IgG-agarose (Sigma-Aldrich). Immunoprecipitations were carried out indirectly using the monoclonal 13C2 or isotype-matched control IgG and captured with anti-mouse IgG-agarose. Extracts and precipitates were analyzed by SDS-PAGE, and proteins were transferred to nitrocellulose by electrophoresis. Residual protein sites were blocked in Tween/Tris-buffered saline (TBST) containing 5% skim milk. The filters were incubated with an mAb directed against β6 (2G2) in TBST plus 2.5% skim milk for 1 hour and developed using ECL.

Xenograft studies.

LIM 1863 organoids (approximately 3 × 106 cells) were inoculated s.c. into the flanks of female nude mice. The animals were 6–7 weeks of age at the time of tumor implantation. Tumor xenografts were harvested 16 weeks later, and formalin-fixed, paraffin-embedded sections were used for immunohistochemistry. All animal studies were approved by the Institutional Animal Care and Use Committee (IACUC) of Beth Israel Deaconess Medical Center.

Flow cytometry.

Cells were incubated with either the anti-β6 mAb 3G9 or an isotype-matched control IgG (10 μg/ml in PBS) for 30 minutes. After washing, cells were resuspended in FITC-conjugated secondary antibody for 30 minutes in the dark, prior to FACScan analysis (BD Biosciences).


Immunohistochemistry was performed using the avidin-biotin complex protocol on paraffin-embedded tissue. Tissue microarray slides were generated as previously described (35). Briefly, formalin-fixed, paraffin-embedded tissue blocks containing colon carcinoma specimens were retrieved from the archives of the Yale University Department of Pathology (New Haven, Connecticut, USA) under Human Investigative Committee (HIC) protocol no. 8219. To generate the microarray, areas of invasive carcinoma were selected for coring and placement into a recipient master block using a Tissue Microarrayer (Beecher Instruments Inc.). Cores measured 0.6 mm in greatest dimension and were spaced 0.8 mm apart. The tissue microarray was sliced into 5-μm sections and adhered to slides by an adhesive tape-transfer system (Instrumedics Inc.) and UV cross-linking. For the metastasis staining, 4 randomly selected cases of liver metastasis and 2 samples of lymph node containing colorectal metastases were selected for study from the Beth Israel Deaconess Medical Center, Department of Pathology (tissue procurement was approved by the Institutional Review Board). For immunohistochemistry, the slides were deparaffinized, and endogenous peroxidase activity was blocked by incubation in a hydrogen peroxide/methanol buffer. Antigen retrieval was then performed by incubation of the slides in a pepsin solution (Zymed Laboratories Inc.) at 37°C. Overnight incubation at 4°C with primary antibody (2G2, 2 μg/ml; E-cadherin, 0.04 μg/ml) in 0.1% BSA was preceded by blocking with 1× casein solution (Vector Laboratories Inc.). Negative controls were performed by substitution of the primary antibody with PBS. The following day, biotinylated anti-mouse IgG (1:200; DakoCytomation) was applied to the slides, which were subsequently treated using a Vectastain ABC kit (Vector Laboratories Inc.). Slides were incubated for 10 minutes with a peroxidase solution (DAKO EnVision+ System, Peroxidase [DAB]; DakoCytomation), stained with hematoxylin, dehydrated, cleared, and mounted.

Migration assay.

Migration assays were performed by assessment of the ability of cells to migrate toward 3T3-conditioned medium using 6.5-mm Costar Transwell chambers (8 μm pore size; Corning Inc.). Where indicated, Transwell membranes were coated on both surfaces with 20 μg/ml laminin-1 (Roche Diagnostics Corp.) or 50 μg/ml human cellular fibronectin (Sigma-Aldrich) by immersion overnight at 4°C, before aspiration and 3 washes in PBS. LIM 1863 organoids were treated with TNF-α and TGF-β to induce an EMT and added to the upper chambers, and 3T3-conditioned medium was added to the lower wells of the chambers to induce chemotaxis. For antibody-inhibition studies, cells were seeded in medium containing either no antibody, anti-β6 (10D5), or an isotype-matched control IgG antibody (100 μg/ml). After 3 days, cells were removed from the upper face of the filters using cotton swabs, and the cells that had migrated to the lower surface were fixed in methanol. Filters were mounted onto microscope slides using VECTASHIELD mounting medium with DAPI (Vector Laboratories Inc.), and migration was quantified by visual counting using fluorescence microscopy. Assays were carried out in triplicate, and the results presented are the means of 8 random fields from each well.

TGF-β bioassay.

In 96-well plates, LIM 1863 cells were cultured in the presence and absence of TNF-α and TGF-β for 24 hours (in 100 μl of RPMI plus 5% FCS). After 3 gentle washes with DMEM containing 10% FCS, 2 × 104 reporter cells (17) were seeded onto the LIM 1863 cells in 100 μl per well in the absence or presence of the β6-blocking antibody 3G9 (30 μg/ml) or isotype-matched control (CSβ6). Cells were cultured for an additional 16–20 hours, and lysates were assayed for luciferase activity as previously described (16).

Statistical methods.

Kaplan-Meier method was used to estimate median survival, 5-year survival, and 10-year survival along with their 95% confidence intervals. Log-rank test was used to examine the differences in the overall survival between groups. The proportional hazard ratio model was used to obtain more precise estimates of the effects of protein expression on survival by adjusting for the effects of age, gender, tumor type, and cancer stage. In all analyses, only disease-related deaths were treated as events.


This work was supported by NIH grants CA 80789 and CA107548 (to A.M. Mercurio) and by the Harvard Digestive Diseases Center (NIH grant DK34854; to R.C. Bates). We wish to thank Jeffrey Goldsmith (Beth Israel Deaconess Medical Center), David Rimm (Yale University, New Haven, Connecticut, USA), and Shelia Violette (Biogen Idec, Cambridge, Massachusetts, USA) for invaluable contributions to this manuscript by way of reagents, techniques, and expertise.


Nonstandard abbreviations used: EMT, epithelial-mesenchymal transition.

Conflict of interest: The authors have declared that no conflict of interest exists.


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