The aim of this work was to design an optimized toxigenic culture scheme for detection and combined identification and toxigenic type characterization of C. difficile from stool samples. Indeed, as long as toxinogenic C. difficile strains are recognized as the primary cause of nosocomial gastrointestinal disease, a good management approach includes optimal diagnostic methods, which so far include EIAs, CA, or toxigenic culture.
The presence of
C. difficile in stool cultures is easily suspected on the basis of phenotypic characteristics (such as colony morphology, odor, and fluorescence under UV light). However, for accurate identification, additional tests, such as biochemical test panels or even gas-liquid chromatographic analysis (
17), are needed. In the present work, we propose to identify
C. difficile by PCR amplification of an internal fragment of the
tpi housekeeping gene, which was found more discriminatory than 16S ribosomal DNA for the identification of 12 species within the genus
Clostridium (
13). This
tpi fragment was successfully amplified from all the 72
C. difficile strains previously selected from various hosts and geographic sources and was not amplified from the other 11 species tested, including
C. sordellii and
C. bifermentans, which are phylogenetically closely related to
C. difficile (
11). Furthermore, the combined detection of
tpi,
tcdA, and
tcdB fragment genes by multiplex PCR provides a one-step method for identification and toxigenic type characterization of
C. difficile. Of note, A−B+ variant strains are sometimes reported only on the basis of lack of
tcdA amplification, or even on the basis of lack of toxin A detection by EIA (
1,
28). This approach may be unreliable, because PCR inhibitors or any variations in the
tcdA sequence (other than those characterizing these A−B+ variants) can result in lack of
tcdA fragment amplification or lack of toxin A detection by EIA. The primers designed in this work allow the detection of a partially deleted
tcdA fragment in A−B+ variant strains and thus avoid false toxigenic type characterization.
At present, many
C. difficile variant strains are characterized on the basis of their
tcdA and
tcdB toxin genes in comparison to the reference strain VPI 10463 (
26), but A−B+ variant strains (especially those belonging to toxinotype VIII and serogroup F) are of particular clinical significance (
2,
21,
27). Epidemiological studies have reported various prevalence rates: 0.2% in the United States (
24), 2.5 to 3% in European countries (
4,
9), and 6.7 to 39% in Japan (
18,
19). Higher rates, such as 56.5% reported in an Israeli hospital (
28), suggest local epidemic events. However, almost all these results were obtained from retrospective studies, while at the time of diagnosis, A−B+ variants were only suspected or even not detected. The present multiplex PCR allows the characterization of toxigenic types at the time of diagnosis and is thus more efficient for diagnosis of intestinal infections involving A−B+ variants. The detection of nontoxigenic isolates by
tpi amplification could also contribute to a better knowledge of the global epidemiology of this species.
The
C. difficile detection rate for human samples in the present work was comparable to that of previous studies (
22,
29). However, few data are available about
C. difficile detection rates for animal samples. In the present study, 8% of animal samples (corresponding to 23 of 245 horses, 20 of 272 cattle, 5 of 22 dogs, and 2 of 10 cats) were positive for
C. difficile culture, but only 4.3% were positive for toxinogenic strains (13 horses, 11 cattle, 2 dogs, and 1 cat). It was suggested that 21 and 30% of domestic pets (dogs and cats, respectively) could be infected or colonized by
C. difficile (
25). Other authors reported that 6 to 42% of horses that developed acute colitis or diarrhea were positive for
C. difficile culture and that horses that developed acute colitis during or immediately after antimicrobial treatment had the highest recovery rates (
7,
14). In fact, our results agree with the data mentioned above, since only a few horses had a history of antibiotic treatment associated with diarrhea or colitis.
Although CA and many EIAs are available for the diagnosis of
C. difficile-associated disease, culture of
C. difficile remains essential (
12). The epidemiology of an outbreak can be monitored only by bacterial culture, and macroepidemiology or antimicrobial susceptibility studies also require strain isolation. The multiplex PCR-toxigenic culture scheme described here provides both strain isolation and toxigenic type characterization. It may also be compared to the Triage
C. difficile Panel, since both methods target a species-specific marker (the
tpi gene in multiplex PCR, the Gdh antigen in Triage) and toxins of
C. difficile (
tcdA and
tcdB genes in multiplex PCR, toxin A in Triage). Indeed, since Triage detects only toxin A, it cannot characterize A−B+ variants, which appear as nontoxigenic strains (requiring complementary tests in the case of Gdh-positive and toxin A-negative results to avoid a mistaken diagnosis). Rapid diagnosis of
C. difficile-associated disease is needed in order to initiate specific treatment and to take adequate measures to control nosocomial spread, but monitoring pathogenic variant strains is also essential in order to better evaluate the relevance of the diagnostic tests in each hospital laboratory. The present multiplex PCR-toxigenic culture scheme may be proposed as a reliable diagnostic method, since it provides detection and toxigenic type results within 36 to 48 h. An EIA such as the Triage
C. difficile Panel provides results within 1 h and is thus well suited for urgent situations, as when there is a suspicion of pseudomembranous colitis. Finally, since CA is not routinely performed in most clinical microbiology laboratories, EIAs are largely used for the diagnosis of
C. difficile-associated disease. Since toxigenic culture is also an alternative diagnostic method (which also provides isolates suitable for epidemiological analysis) (
12), the multiplex PCR-toxigenic culture scheme may be proposed as an improved diagnostic approach for human and animal
C. difficile intestinal infections, offering combined species identification and toxigenic type characterization.