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High-grade serous ovarian cancer (HGSOC) is the most lethal gynecological malignancy and may arise in either the fallopian tube epithelium (FTE) or ovarian surface epithelium (OSE). A mutation in p53 is reported in 96% of HGSOC, most frequently at R273 and R248. The goal of this study was to identify specific gene targets in the FTE that are altered by mutant p53, but not in the OSE. Gene analysis revealed that both R273 and R248 mutant p53 reduces CDH6 expression in the oviduct, but CDH6 was not detected in murine OSE cells. p53R273H induced SLUG and FOXM1 while p53R248W did not induce SLUG and only modestly increased FOXM1, which correlated with less migration as compared to p53R273H. An oviduct specific PAX8Cre/+/p53R270H/+ mouse model was created and confirmed that in vivo mutant p53 repressed CDH6 but was not sufficient to stabilize p53 expression alone. Overexpression of mutant p53 in the p53 null OVCAR5 cells decreased CDH6 levels indicating this was a gain-of-function. SLUG knockdown in murine oviductal cells with p53R273H restored CDH6 repression and a ChIP analysis revealed direct binding of mutant p53 on the CDH6 promoter. NSC59984, a small molecule that degrades mutant p53R273H, rescued CDH6 expression. In summary, CDH6 is expressed in the oviduct, but not the ovary, and is repressed by mutant p53. CDH6 expression with further validations may aide in establishing markers that inform upon the cell of origin of high grade serous tumors.
Ovarian cancer is the fifth leading cause of cancer related deaths in American women . The American Cancer Society projects 22,280 new cases of ovarian cancer in 2016 and the estimated 5 year death rate is 65% . Epithelial ovarian cancer (EOC) constitutes the most predominant form of the disease with high grade serous ovarian cancer (HGSOC) being the most common and lethal histotype . One of the obstacles in developing treatments for HGSOC is the lack of understanding of the pathogenesis of HGSOC due to an uncertain site of origin . Traditionally, it was thought that HGSOC arises from the ovarian surface epithelium (OSE), but over the last decade it has become apparent that the fallopian tube epithelium (FTE) is also a likely source for HGSOC . As evidence, prophylactically removed fallopian tubes from women who are genetically predisposed to developing ovarian cancer expressed dysplastic and hyperplastic lesions with accumulation of mutations in the tumor suppressor gene psmall proteoglycan associated with53 in the FTE . Marquezet et al. and Merritt et al. found significant correlations between the transcriptome of serous ovarian cancers and normal fallopian tube epithelium and a decrease in overall survival for fallopian tube like tumors [6, 7]. A retrospective study found that salpingectomy was associated with a 45% reduction in the risk of ovarian cancer . Lastly, a mouse model with Pax8 driven tissue specific Brca and Pten deletion combined with Tp53 mutation in fallopian tube secretory epithelium leads to HGSOC .
Mutations in p53 occur in 96% of HGSOC, and the identification of p53 mutations in putative benign lesions suggests that mutation of this gene is critically important and occurs early in fallopian-tube derived HGSOC . In HGSOC, the most frequent p53 mutations occur in the DNA binding domain at codons R273, R248 and R175 . Some DNA binding mutations are termed gain of function (GOF) mutations, which refers to the enhanced biological activity that facilitates tumor growth and metastasis . Mouse models with p53R270H/− and p53R172H develop more carcinomas, with increased capacity for metastasis . Mice expressing a knock-in p53R248W have accelerated formation of lymphomas and sarcomas with increased chemoresistance . Ovarian carcinoma patients harboring a R248W mutation have a poor overall survival compared to R273H with selective chemoresistance to microtubule stabilizers . Currently, small molecules are being identified that can alter the mutant p53 configuration back to wild-type or can degrade mutant p53 protein. Treatment with NSC59984 in p53R273H mutant colorectal cancer cell lines demonstrated an increase in mutant p53 degradation and stabilization of p53WT signaling through activation of p73 . Given the evidence that mutation in p53 impacts tissues differently, the response of HGSOC derived from OSE and fallopian tube to small molecules that alter mutant p53 may differ.
Murine oviductal epithelial cells (MOE), the equivalent of human fallopian tube, harboring the p53R273H mutation migrate more than control cells . Microarray data confirmed expression changes of pro-migratory genes in p53R273H transfected MOE cells compared to parental cells . The tissue specificity of the pro-migratory genes remains unknown. However, the same mutation did not show any phenotypic changes in murine ovarian surface epithelial cells (MOSE)  largely due to a lack of SLUG induction. SLUG is a p53 transcriptional target and a migratory protein . Different p53 mutations have tissue specific signaling mechanisms in other cancers. For example, a study in pediatric adrenal cortical carcinoma found that p53R337H did not form sarcoma in soft tissues or bone which is frequently found in case of Li-Fraumeni families . Another study found tissue specific regulation of p53 targets in liver and spleen cells . Liver cells had induced p21 induction with no expression of apoptotic genes, but spleen cells had the inverse, specific induction of apoptotic gene PUMA occurred without changes in p21 .
The objective of this study was to identify a mutant p53 FTE target gene to determine if markers might be present that can facilitate determination of the cell of origin. Two frequently reported p53 DNA contact mutants (R273H and R248W) in HGSOC were chosen and a panel of pro-migratory genes from our previously published cDNA microarray data in FTE vs OSE was mined to determine if they are differentially regulated by mutant p53 in the OSE compared to oviductal cells. In addition, NSC59984 treatment in MOE cells harboring p53R273H and p53R248W suggests that p53 DNA binding mutants may differ and may require different small molecules to inhibit their activity.
A microarray analysis in MOE cells expressing the p53R273H revealed a significantly altered pro-migratory gene signature compared to the MOE vector control cells . Based on those results, several candidate genes (Supplementary Table S1) were chosen based on their expression in the fallopian tube, their role in migration, and their association with cancer [21–25]. The selected candidate genes were cadherin-6 type 2, K-cadherin (Cdh6, cell adhesion proteoglycan), pregnancy-associated plasma protein A (Pappa, secreted metalloprotease), wingless-type MMTV integration site family, member 4 (Wnt4, local signaling molecule) and decorin (Dcn, small proteoglycan associated with collagen). Quantitative PCR (qPCR) was used to validate the microarray using MOE cells expressing p53R270H mutation (the murine equivalent of R273H). Ccl2 expression was repressed by mutant p53  and this was confirmed as a positive control (Figure (Figure1A).1A). Increased Dcn, decreased Pappa, Cdh6 and Wnt4 expression levels were measured in MOE p53R270H (Figure (Figure1A)1A) cells compared to control. Next, CDH6 and DCN protein levels were examined. Reduced CDH6 and increased DCN protein was seen in MOE cells with p53R270H (Figure 1B and 1C).
To test if human p53 mutations (R273H and R248W) alter the pro-migratory gene expression in MOE cells, qPCR was performed. MOE cells harboring human p53 mutation R273H exhibited induced Dcn expression and reduced Cdh6, Pappa, Wnt4 and Ccl2 mRNA levels compared to control cells (Figure (Figure1D).1D). Western blot analysis confirmed that p53R273H repressed CDH6 expression and induced DCN expression in MOE cells (Figure 1E and 1F) similar to the murine p53R270H. To further determine if any of these targets are uniquely regulated in fallopian tube cells compared to the OSE, MOSE cells expressing p53R270H mutation (the murine equivalent of R273H) were used. qPCR revealed increased Dcn and reduced Ccl2, Pappa and Wnt4 in MOSEp53R270H cells compared to control cells (Figure (Figure1G).1G). Interestingly, Cdh6 expression was not detected in MOSE cells. Consistent with qPCR analysis, CDH6 protein was not detected and DCN expression was not altered in MOSE cells with p53R270H (Figure (Figure1H).1H). These analyses revealed that CDH6 is repressed in MOE cells by p53 mutation, but its expression and regulation in MOSE cells was not detectable.
MOE cells with stable p53R248W expression were next investigated. A MOEp53R248W clone was confirmed for human p53 mRNA (Supplementary Figure S1A) and p53 protein expression (Supplementary Figure S1B and S1C). p53R248W increased Dcn and reduced Ccl2, Cdh6, Pappa and Wnt4 as compared to control (Figure (Figure2A).2A). CDH6 protein levels were decreased and DCN was induced due to p53R248W in MOE cells (Figure 2B and 2C) similar to p53R273H. Because p53R273H and p53R248W are the two most frequently mutated sites in ovarian cancer, and our previous data indicated that p53R273H mutation enhanced migration , we tested the effect of stable p53R248W on migration. MOEp53R248W cells migrated ~20% faster than the vector control (MOENeo cells), but not as rapidly as MOE p53R273H cells (Figure (Figure2D).2D). FOXM1 is induced by mutant p53 and can increase tumor metastases . Our previous data indicated that SLUG was a key downstream target of R273H that mediated motility . FOXM1 expression levels in MOE p53R248W cells were lower than the levels in MOE p53R273H cells (Figure (Figure2E2E & 2F). SLUG expression was not detected in MOE p53R248W cells (Figure (Figure2E2E & 2F). These data suggest that p53R273H and p53R248W do not equally induce SLUG and FOXM1 expression in the fallopian tube and this modified migration.
In order to verify whether CDH6 is regulated by mutant p53 in vivo, a transgenic mouse model was developed. A tissue specific transgenic mouse model was generated by crossing mice with a Lox-stop-Lox site regulating expression of the R270H mutation with mice expressing cre-recombinase driven by the Pax8 promoter. Using this model, p53R270H remains floxed and only p53WT is expressed except in PAX8 expressing tissues, such as the oviduct, uterus, and kidney. PCR confirmed that the p53R270H had recombined in the oviduct and uterus, but not in the ovaries, which do not express PAX8 and therefore would lack cre-recombinase (Supplementary Figure S2A). Mice were sacrificed after 9 months, tissues were dissected and mRNA was extracted for qPCR. Cdh6, Pappa, Wnt4, and Ccl2 mRNA levels were decreased and Dcn mRNA was increased in PAX8cre/+p53R270H/+ compared to control PAX8cre/+ oviducts (Figure (Figure3A).3A). Dcn, Pappa, Wnt4, and Ccl2 were not significantly altered in the PAX8cre/+p53R270H/+ ovaries (Supplementary Figure S2B). Consistent with the cellular models, Cdh6 mRNA levels were not detected in ovaries. Immunohistochemistry (IHC) analysis was used to identify the protein levels in PAX8cre/+p53R270H/+ and PAX8cre/+ oviducts and ovaries. CDH6 staining was high in PAX8cre/+ oviducts and the staining intensity decreased in PAX8cre/+p53R270H/+ oviducts as predicted based on repression from p53R270H (Figure (Figure3B).3B). DCN was detected in PAX8cre/+ and was induced in PAX8cre/+p53R270H/+ oviducts (Figure (Figure3B).3B). p53 stabilization was not detected in PAX8cre/+p53R270H/+ oviducts (Figure (Figure3B).3B). Negative CDH6 and p53 staining was seen in the ovaries (Supplementary Figure S2C). Both PAX8cre/+p53R270H/+ and PAX8cre/+ ovaries stained positive for DCN with no change at the protein level by R270H (Supplementary Figure S2C). Normal human fallopian tube fimbriae also expressed CDH6 (Figure (Figure3C).3C). DCN expression and p53 stabilization was not observed in normal human fallopian tube fimbriae (Figure (Figure3C).3C). CDH6 staining was not detected in normal human ovarian surface epithelium by IHC (Figure (Figure3D).3D). CK8 positive staining confirmed the presence of OSE (Figure (Figure3D).3D). Additionally, CDH6 protein was not detected in immortalized ovarian surface epithelial cell lysate (IOSE80) (Figure (Figure3E).3E). These in vivo analyses demonstrate that CDH6 is specifically repressed by mutant p53 in the oviducts.
Mutations in p53 may directly or indirectly repress Cdh6 promoter activity. To determine if mutant p53 regulates CDH6 through direct transcriptional repression, MOE cells harboring p53WT, p53R273H, and P53R248W were cultured and ChIP analysis was performed using p53 and Non–specific IgG antibodies. Mdm2 and Atf were used as positive controls in ChIP analysis (Supplementary Figure S3A and S3B) . Increased p53WT occupancy was observed on the Cdh6 promoter when compared to control IgG (Figure (Figure4A).4A). The p53R273H and p53R248W demonstrated a significantly higher occupancy on the Cdh6 promoter compared to p53WT (Figure (Figure4A).4A). These findings suggest that p53 mutation decreases Cdh6 expression in oviductal epithelium through direct repression of the promoter.
A panel of human HGSOC cell lines including OVCAR3, OVCAR5, OVKATE, OVSAHO and OVCAR8 were tested for the presence of CDH6. CDH6 protein was detected in OVCAR5, OVKATE, OVSAHO and OVCAR8 cells (Supplementary Figure S3C). A weak expression of CDH6 was observed in OVCAR3 cells (Supplementary Figure S3C). In order to decipher the regulation of CDH6 by mutant p53 in the absence of p53WT, a p53null human HGSOC cell line (OVCAR5 cells) was transfected to express p53WT, p53R273H or p53R248W. Endogenous CDH6 protein expression did not change in p53WT compared to empty vector control transfected cells (Figure (Figure4B4B & 4C). CDH6 expression was decreased by p53R273H and p53R248W in OVCAR5 cells (Figure (Figure4B4B & 4C). These results suggest that CDH6 was repressed by mutant p53 and that its repression was not dependent on blocking p53WT protein.
To identify if SLUG, a mutant p53 induced pro-migratory protein can reduce CDH6, MOE cells with stable p53R273H expression and Snai2 knock down were used. MOEp53R273H cells had increased SLUG expression and stable SLUG knock down significantly decreased cell migration compared to control cells . SLUG can repress cadherin expression by binding to the E-box motifs on their promoters . Knockdown of SLUG restored CDH6 protein compared to MOEp53R273H cells (Figure (Figure4D4D & 4E). Therefore, both SLUG and mutant p53 regulate CDH6 (Figure (Figure4F4F).
In order to study if inhibition of mutant p53 activity can rescue CDH6 repression, MOE cells with p53R273H were treated with NSC59984. NSC59984 is a small molecule that stabilizes wild type p53 signaling and increases the degradation of mutant p53 . NSC59984 degraded mutant p53 protein and rescued CDH6 repression in MOE cells with p53R273H (Figure 5A and 5B). NSC59984 also reduced the cell migration in MOEp53R273H with no change in migration in MOEp53WT cells compared to DMSO treated cells (Figure 5C and 5D). HGSOC cell line OVCAR3 was selected to test the activity of NSC59984 because it expresses the p53R248W mutation and is considered a viable model of high grade serous cancer . NSC59984 did not have an effect on OVCAR3 cells (Supplementary Figure S4). Our results demonstrate that NSC59984 reduces p53R273H activity, but not R248W, and can revive CDH6 repression and reduces cell migration.
Mounting evidence suggests that the FTE is a likely progenitor cell for HGSOC with p53 mutation almost being essential in HGSOC [5–7, 10]. However, the ovarian surface may still give rise to some serous tumors . While almost all tumors have a p53 mutation, the two most frequent mutations are the DNA binding missense mutations, R273H and R248W [12, 32]. One potential route to improving personalized therapy for ovarian cancer is to understand the accumulating steps in tumor formation that might be targeted, which could be specific to the tissue from where the tumors originate. Thus if a tissue specific target of mutant p53 exists, it may help to differentiate FTE from OSE derived tumors. Using previously published microarray data on MOEp53R273H cells  a set of pro-migratory genes including Cdh6, Pappa, Dcn, Wnt4 and Ccl2 were chosen to study in oviductal epithelium and OSE. CDH6 was repressed by p53 mutants only in the MOE cells, but it was not expressed or regulated in MOSE cells. Human fallopian tube epithelial cells express CDH6, but CDH6 expression was not detected in human OSE. While gene expression for mutant p53 targets may not be retained throughout all phases of tumor progression, these data suggest that unique mutant p53 targets are present in fallopian tube that may provide clues to distinguish the two cell progenitor populations. This study also identified that p53 mutations are capable of altering a subset of genes identically in fallopian tube and ovarian surface. CDH6 is membrane glycoprotein and a member of the cadherin family that mediates homophilic cell-to-cell adhesion. CDH6 plays a key role in cell morphogenesis and when disrupted, may contribute to cell migration [33, 34]. CDH6 has been associated with cancer cells in the literature as a target that is repressed by estrogen signaling in ovarian cancer . Cristofaro et al. demonstrated PAX8 can directly bind to CDH6 promoter and induce its expression in an immortalized fallopian tube secretory epithelial cell line . Lastly, CDH6 was identified as a downstream target for p53 and Pax2 co-operative regulation during kidney development and nephrogenesis .
MOE cells stably transfected with p53R248W migrated more than control cells, but this was lower than p53R273H cells, consistent with previous reports suggesting that R273H increases tumor invasion [12, 32]. R273H and R248W may have distinct regulation on certain pro-migratory targets, for example SLUG and FOXM1 were only highly regulated by R273H. However, this study cannot fully explain the longer survival times in patients with R273 compared to R248 , which may be a reflection of the chemoresistance often seen in tumors with R248 [12, 32].
In HGSOC, p53 signatures (p53 protein stabilization in FTE) are a proposed early precursor lesions . Intriguingly, Pax8cre/+p53R270H/+ oviducts lacked p53 staining by IHC, which is consistent with published data that mutation in p53 alone did not result in p53 stabilization in murine models [13, 17]. In other models with constitutive mutant p53 expression, the stabilization of the protein is seen in tumors, but not in the adjacent normal cells with a p53 mutation . Terzian et al. found mice lacking Mdm2 or p16Ink4a stabilized mutant p53 when crossed with p53 homozygous mutant mice suggesting that loss of heterozygosity, loss of MDM2, or loss of p16 are necessary to mediate p53 stabilization . The Pax8cre/+p53R270H/+ animals demonstrated no signs of tumor formation up to 12 months whereas our previous results using stable cells lines derived from oviductal cells with stable PTEN knockdown alone demonstrated p53 stabilization . These data suggest that mutation alone may not generate the p53 signature, but may be a prerequisite for p53 stabilization.
High mutant p53 occupancy compared to the p53WT on the Cdh6 promoter was demonstrated by ChIP analysis in MOE cells. SLUG knockdown restored CDH6 repression in MOE cells with p53R273H mutation. SLUG, a p53 transcriptional target, was enhanced by p53R273H and increased migration . SLUG can bind to E-box motifs to repress cadherin expression . The TCGA reports amplification of SNAI2 (encodes for SLUG) in 12% HGSOC. Together, the data suggests that p53 independently and coupled with SLUG can regulate CDH6 expression. CDH6 levels were significantly reduced when p53R273H and p53R248W were expressed even in the absence of wild-type p53. This supports that CDH6 repression by mutant p53 is independent of p53WT and may be due to GOF activity. Zhu et al. found that p53 GOF mutants, including R273 and R248, in a CHIPseq analyses had proximal peaks on chromatin regulatory genes in breast cancer cell lines . The same study also found that p53R273H had enriched peaks on E26 transformation-specific (ETS) motifs that were distinct from p53WT . The CDH6 promoter contains an ETS binding motif. This observation support that CDH6 repression by mutant p53 could be due to GOF activity and this is consistent with mechanisms in the literature that require ETS motifs .
Currently, researchers are trying to identify small molecules to increase the degradation of mutant p53 or revert the mutant confirmation to wild type. A cell-penetrating peptide significantly inhibited p53 aggregation in OVCAR3 cells resulting in reduced tumors in vivo . NSC59984 is a small molecule that can effectively degrade mutant p53 protein via MDM2 mediated ubiquitination, and is effective against colorectal cancer . NSC59984 enhanced CDH6 expression, reduced mutant p53 expression, and inhibited cell migration in MOEp53R273H cells. NSC59984 did not have an effect on p53 or CDH6 protein in OVCAR3 cells harboring the p53R248W mutation. These data indicate that p53 mutants are unique and may require distinct small molecules to inhibit their activity, however more exploration is required to support this finding. Additionally, future clinical studies using small molecules or peptides that inhibit mutant p53 aggregation or that degrade mutant p53 should therefore be considered along with sequencing HGSOC tumors prior and post treatment. The existence of a p53 DNA contact mutant target, which is regulated in the fallopian tube but not expressed in ovaries, with further validations using human ovarian tumors and HGSOC clinical samples, may add to the existing tools for finding the cell of origin of serous tumors and improve personalized therapies that work better in tumors arising from the fallopian tube.
Murine oviductal epithelial (MOE) cells were obtained from Dr. Barbara Vanderhyden at the University of Ottawa and were maintained in media as previously described . MOENeo, MOEfloxed, MOEp53R273H, MOEp53R270H, MOSEfloxed and MOSEp53R270H cell lines were made as previously described . MOEp53R248W stable cell lines were generated using a construct pCMV-Neo-BAM p53 R248W which was a gift from Bert Vogelstein (Addgene plasmid # 16437) . Stable clones were selected using Neomycin resistance and were verified with Western blot and qPCR analysis. OVCAR3 cells were obtained from ATCC and maintained in media as described previously . Small molecule NSC59984 was available through National Cancer Institute (NCI) as part of NCI/DTP Open Chemicals Repository. OVCAR5 cells (gift from Dr. Gustavo Rodriguez and Dr. Teresa Woodruff at Northwestern University) and are available through NCI as part of the NCI60 tumor cell line anticancer drug screen and maintained in media as described previously . Human Immortalized ovarian surface epithelial cells (IOSE80) were a gift from Dr. Nelly Auersperg at the University of Vancouver and were maintained as described previously . OVKATE and OVSAHO were obtained through MTA from the Japanese Collection of Research Bioresources Cell Bank (JCRB) and maintained in media as described previously . OVCAR8 cells were obtained from ATCC and maintained in media as described previously . OVCAR3, OVCAR5, OVKATE, OVSAHO and OVCAR8 cells have been verified by STR analysis. The molecular profiles and in vivo tumor growth capabilities of the human HGSOC cell lines used in this study have been previously characterized . OVCAR5 cells were transiently transfected with antibiotic resistant plasmids containing gene of interests which includes pCMV6-Myc-Neo (Origene, donated by Dr. Kwong Wong, M.D. Anderson Cancer Center, Houston, TX), pCMV-Neo-BAM p53 R273H was a gift from Bert Vogelstein (Addgene plasmid # 16439) , pCMV-Neo-BAM p53 wt was a gift from Bert Vogelstein (Addgene plasmid # 16434)  and pCMV-Neo-BAM p53 R248W. All transfections were performed using TransIT LT1TM (Mirus Bio, Madison, WI) according to the manufacturer's instructions.
All animals were treated in accordance with the National Institutes of Health Guidelines for the Care and Use of Laboratory Animals and the established Institutional Animal Use and Care protocol at the University of Illinois at Chicago (UIC). In addition, the Animal Care Committee approved the protocol 14-163. Animals were housed in a temperature and light controlled environment (12 hours' light, 12 hours dark) and were provided food and water ad libitum. The Lox-stop-Lox regulating p53R270H mice (from Mouse models of Human Cancer Consortium) were bred with mice that express Cre- Recombinase (from Research institute of molecular pathology, Vienna, Dr. Bohr-Gasse  under the control of Pax8 promoter to generate p53R270H/+ mice. Genotyping was done as previously described (Jackson Laboratory, Bar Harbor, ME) to identify p53R270H/+ mice from p53Cre/+ mice. All mice were euthanized by CO2 inhalation followed by cervical dislocation. Reproductive tract was extracted and used for immunohistochemistry and qPCR analysis.
Reproductive tract was prepared for paraffin sectioning and immunohistochemistry or hematoxylin and eosin stain as described previously . Tissues were incubated with the following primary antibodies at 4°C overnight: CDH6 1:50 (cat No: ab197845, Abcam, Cambridge, MA), decorin (DCN) 1:50 (Cat No: PA5-13538, ThermoFisher scientific, Rockford, IL), Cytokeratin 8 (CK8) 1:100 (Developmental studies, Hybridoma Bank, Iowa city, IA) and p53 1:50 (Cat No: SC6243, Santa Cruz Biotechnology, Dallas, TX). In all experiments, tissues without the primary antibody treatment were used as a negative control. Images were acquired on a Nikon Eclipse E600 microscope using a DS-Ri1 digital camera and NIS Elements software (Nikon Instruments).
RNA extraction was performed using Trizol (Life Technologies, Grand Island, NY) and chloroform with isopropanol precipitation followed by ethanol washes and DNAse step. RNA concentrations were determined using NanoVue plus spectrophotometer (GE healthcare, product code 28-9569-62). 1μg of RNA was reverse transcribed using iScript cDNA synthesis kit (Biorad, Hercules, CA) according to manufacturer's instructions. All qPCR measurements were performed using the ABI ViiA7 (Life Technologies, San Diego, CA) and SYBR green (Roche, Madison, WI). All primers were validated for efficiency through serial dilutions and generation of a standard curve and visual inspection of the melt curve. Standard PCR was done on the mouse models for genotyping and to demonstrate cre-mediated expression of the mutant p53 allele in PAX8-cre expressing tissues. The primers and the protocol are as described previously . Primers used in qPCR are listed in Supplementary Table S2.
Cells were lysed using RIPA buffer (50mM Tris, pH 7.6, 150 mM NaCl, 1% Triton X-100, 0.1% SDS) with protease and phosphatase inhibitors (Sigma-Aldrich, St. Louis, MO). Protein concentration was determined by BCA assay (Pierce, Rockford, IL). 30 μg of total protein was electrophoresed in 10% SDS – PAGE gel and transferred to nitrocellulose membrane (Thermo Fisher Scientific, Waltham, MA). Blots were then blocked with 5% milk in TBS-T or 5% BSA in TBS-T and probed at 4°C overnight with primary antibodies. The following primary antibodies were used: ACTIN 1:1000 (Cat No: A2066, Sigma-Aldrich, St. Louis, MO), CDH6 1:500 (cat No: ab197845, Abcam, Cambridge, MA), DCN 1:1000 (Cat No: PA5-13538, ThermoFisher scientific, Rockford, IL), p53 1:500 (Cat No: SC6243, Santa Cruz Biotechnology, Dallas, TX), FOXM1 1:200 (Cat No: SC500, Santa Cruz Biotechnology, Dallas, TX), SLUG 1:1000 (Cat No: ab106077, Abcam, Cambridge, MA and α – Tubulin 1: 1000 (Cat No: 2144, Cell Signaling, Beverly, MA). Anti-rabbit HRP-linked secondary antibodies (Cell Signaling Technology, Inc.) were used at a concentration of 1:1000 for all blots except for actin, which was used at 1:10,000 (Promega, Madison, WI) for 30 min in blocking buffer. After washing, membranes were incubated in SuperSignal West Femto substrate (Thermo Scientific, Rockford, IL) before imaging on a FlourChem™ E system (ProteinSimple, Santa Clara, CA). Densitometric analysis was performed using NIH ImageJ.
Cells were plated to confluence (1.5 x 105 cells/well) in a 24- well plate. A uniform wound was created through the cell monolayer. Cells were washed with 1X phosphate buffer saline (PBS) and replenished with new media. Pictures were taken at 0 and 8 hrs after scratching using an AmScope MU900 with Toupview software (AmScope, Irvine, CA). The area of the scratch was analyzed with ImageJ NIH software. Percentage of closure was determined by measuring the final volume of the wound relative to the initial volume of the scratch.
30 μl Dynabeads protein G (Life technologies, Cat no. 10003D) were used per pull down assay. Bead washing and antibody binding was performed as described previously . A magnetic separation rack (Cell signaling – 7017) was used to pull the beads off between washes. Normal rabbit IgG 1:100 (Cat No: 2729, Cell signaling, Beverly, MA) was used as control and p53 1:100 (Cat No: SC6243, Santa Cruz Biotechnology, Dallas, TX) as test antibody. MOEp53WT and MOEp53R273H and MOEp53R248W cells in 10cm dish were fixed with 1% formaldehyde. MOEp53WT were treated with 10 μM proteasome inhibitor MG132 (Sigma - M7449) for 4 hours prior to fixing. Cell lysis and cross-linking was done as described previously . Sonication was done with 20 second pulse “on”, 40 second pulse “off” for a total of 4 minutes, with 50% amplitude using a Sonic Dismembrator (Branson, Model 500). Cross-linking was achieved by mixing 250 μl sonicated supernatant and 100 μl of Protein G bead slurry attached to IgG and p53 antibodies separately. De-crosslinking and dissociation of chromatin-antibody complexes from the beads was done as described previously . Phenol chloroform extraction was performed using UltraPure™ Phenol: Chloroform: Isoamyl Alcohol (25:24:1 v/v) as described by manufacturer's protocol (Thermo Fisher Scientific, Waltham, MA). Combining 3.6 μl dH2O, 0.5 μM primer pair, 5 μl SYBR green mix and 1 μl sample qPCR analysis was done using the ABI ViiA7 (Life Technologies, San Diego, CA). The relative occupancy of the immunoprecipitated protein (IgG and p53) on the target gene promoter was estimated using the following equation: 2^(Mean Ct Input-log1002 – Mean CtIgG or p53). Primers used are listed in Supplementary Table S3.
Data are presented as the mean ± standard error of the mean. Statistical analysis was carried out using GraphPad Prism software (GraphPad, La Jolla, CA). Statistical significance was determined by Student's t-test or one-way ANOVA followed by a Tukey's posthoc test. p<0.05 considered significant.
We would like to thank May Fern Toh for her assistance with standard PCR assays. We would like to thank Saurabh Malpani, Mary Ellen Pavone, and Teresa Woodruff at Northwestern University for human tissue samples.
CONFLICTS OF INTEREST
The authors have declared that no conflict of interest exists.
This research has been generously funded by the American Cancer Society Grant RSG-12-230-01-TBG and National Institutes of Health Grants UH3TR001207.