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Oncotarget. 2016 November 1; 7(44): 72197–72210.
Published online 2016 September 30. doi:  10.18632/oncotarget.12363
PMCID: PMC5342154

A strong host response and lack of MYC expression are characteristic for diffuse large B cell lymphoma transformed from nodular lymphocyte predominant Hodgkin lymphoma

Abstract

Nodular lymphocyte predominant Hodgkin lymphoma (NLPHL) is an indolent lymphoma, but can transform into diffuse large B cell lymphoma (DLBCL), showing a more aggressive clinical behavior. Little is known about these cases on the molecular level. Therefore, the aim of the present study was to characterize DLBCL transformed from NLPHL (LP-DLBCL) by gene expression profiling (GEP). GEP revealed an inflammatory signature pinpointing to a specific host response. In a coculture model resembling this host response, DEV tumor cells showed an impaired growth behavior. Mechanisms involved in the reduced tumor cell proliferation included a downregulation of MYC and its target genes. Lack of MYC expression was also confirmed in 12/16 LP-DLBCL by immunohistochemistry. Furthermore, CD274/PD-L1 was upregulated in DEV tumor cells after coculture with T cells or monocytes and its expression was validated in 12/19 cases of LP-DLBCL. Thereby, our data provide new insights into the pathogenesis of LP-DLBCL and an explanation for the relatively low tumor cell content. Moreover, the findings suggest that treatment of these patients with immune checkpoint inhibitors may enhance an already ongoing host response in these patients.

Keywords: nodular lymphocyte predominant Hodgkin lymphoma, diffuse large B cell lymphoma, T cell/histiocyte rich large B cell lymphoma, host response, gene expression profiling

INTRODUCTION

Diffuse large B cell lymphoma (DLBCL) is the most frequent type of aggressive B cell lymphoma and comprises a heterogeneous mixture of cases [1]. DLBCL can be subdivided according to its cell of origin into germinal center B cell (GCB)-like and activated B cell (ABC)-like lymphomas [2, 3]. Assignment to GCB and ABC categories has also been associated with prognosis [3]. Currently, new treatment options for ABC-DLBCL are evolving, since these lymphomas are dependent on chronic active B cell receptor signaling and frequently engage self-antigens [4]. Some immunohistochemical classifiers discriminate between DLBCL of GCB and Non-GCB type [5, 6].

Nodular lymphocyte predominant Hodgkin lymphoma (NLPHL) is a subtype of Hodgkin lymphoma (HL). In contrast to classical HL it has several particular features, which include a preserved B cell phenotype of the tumor cells [7], the LP cells, and a higher frequency in males as well as a higher risk of transformation into DLBCL. We previously showed in two composite lymphoma cases with available frozen tissue the clonal relatedness of the NLPHL and DLBCL component [8]. These DLBCL transformed from NLPHL (LP-DLBCL) often have a sheet-like growth pattern [9]. However, among the immunohistochemical markers tested, none of them was highly specific for LP-DLBCL [9]. The clinical behavior of LP-DLBCL is controversially discussed at the moment. There are data indicating a more aggressive course [10], but most studies showed a favorable outcome compared to conventional DLBCL [1115]. Therefore, it would be desirable to recognize these cases as transformed NLPHL, even when only the DLBCL part is biopsied. Recently, we demonstrated that mechanisms of transformation from NLPHL into LP-DLBCL can be heterogeneous and that in some cases few additional mutations may be sufficient for transformation, whereas in other cases a huge mutational load together with complex chromothripsis-like genomic aberrations are present [8]. The aim of the present study was to characterize LP-DLBCL by gene expression profiling (GEP) to gain further insight into its pathogenesis.

RESULTS

Gene expression analysis reveals a strong host response signature in LP-DLBCL

Gene expression profiling (GEP) of whole sections from 9 formalin-fixed, paraffin-embedded LP-DLBCL as well as 20 conventional DLBCL was performed. Clinical data of the cases investigated by GEP are listed in Supplementary Table S1. Unsupervised hierarchical clustering of all 20 conventional DLBCL (11 GCB and 9 Non-GCB type) and 9 LP-DLBCL cases revealed a core group of 7 LP-DLBCL cases, which clustered together. All other cases arranged around this core group, without clear separation of GCB- or Non-GCB-DLBCL (Figure (Figure1A1A).

Figure 1
Gene expression profiling recognizes LP-DLBCL as a core group among all DLBCL

A supervised comparison of LP-DLBCL against all other DLBCL cases revealed an overexpression of T cell- and macrophage-associated genes (GZMK, MT1H, C1QA, CD2, STAT1, CD3D, CD3G, SOD2, Table Table1)1) in the LP-DLBCL. Granzyme K (GZMK) is expressed in cytotoxic T cells, therefore possibly reflecting a host anti-lymphoma response. To validate these results, the fraction of positive pixels was assessed in immunostained sections, in order to automatically quantify the T cell antigen CD3 and the macrophage antigens C1QA and p-STAT1, which were identified to be differentially expressed. Indeed, CD3 immunostaining revealed significantly more positive pixels in LP-DLBCL cases when compared with GCB type DLBCL and Non-GCB type DLBCL, respectively (p<0.0001, t-test, Figure Figure1).1). Both, C1QA and p-STAT1, usually expressed in macrophages, showed higher expression values in LP-DLBCL compared with GCB type DLBCL (Figure (Figure1,1, p<0.0001 and p=0.0003, respectively, Mann-Whitney-Test). Despite the slightly higher number of C1QA-positive pixels in LP-DLBCL compared with Non-GCB type DLBCL, the expression of C1QA and p-STAT1 was not significantly different in LP-DLBCL when compared with Non-GCB type DLBCL.

Table 1
Top 25 genes up regulated in LP-DLBCL compared with conventional DLBCL

Several genes known to be expressed in B cells were expressed at lower levels in LP-DLBCL than in conventional DLBCL, including MS4A1 (CD20), CD24 [16], TCL1A [17] and BLNK [18] (Table (Table2).2). Downregulation of these B cell-specific transcripts indicates either a reduced tumor cell content or a partially downregulated B cell phenotype in the tumor cells. Since reactive B cells rarely occur among the non-neoplastic bystander cells, the fraction of CD20-positive pixels reflects the tumor cell content, and was quantified. It was significantly lower in LP-DLBCL compared with GCB-DLBCL (Figure 1E, 1L, 1M, p<0.0001, Mann-Whitney-Test). However, the average intensities of CD20-immunostaining did not differ between LP-DLBCL and GCB-DLBCL (data not shown), arguing against a downregulated B cell phenotype in the tumor cells of LP-DLBCL.

Table 2
Top 15 genes down regulated in LP-DLBCL compared with conventional DLBCL

Since a prominent, partly cytotoxic host response in LP-DLBCL was identified, we compared our GEP data with a previous study by Monti et al. [19], in which a subset of DLBCL with a strong host inflammatory response was detected. When this host response signature was applied to the present data set, eight of nine LP-DLBCL clustered together (Figure (Figure2A)2A) and showed a significant enrichment of this signature using gene set enrichment analysis (p=0.0120, Figure Figure2B),2B), confirming the validity of the present data even across different array platforms.

Figure 2
LP-DLBCL is characterized by a strong inflammatory infiltrate

The inflammatory infiltrate in LP-DLBCL shows a low CD4/CD8 ratio and a high content of macrophages

Since we identified in LP-DLBCL mainly transcripts of reactive bystander cells as being differentially expressed in comparison to conventional DLBCL, numbers of CD4-positive and CD8-positive T cells as well as CD163-positive macrophages were quantified by the Aperio positive pixel count algorithm in these groups (Figure (Figure3).3). Surprisingly, in CD4 immunostaining, a significantly lower number of positive pixels was detected in LP-DLBCL when compared with DLBCL of the GCB and Non-GCB types (Figure 3A, E, F, p=0.0035 and p<0.0001, respectively, Mann-Whitney-Test). In contrast, LP-DLBCL showed significantly higher numbers of CD8-positive pixels when compared with both GCB and Non-GCB type DLBCL (Figure 3B, 3G, 3H p=0.0002 and p=0.0169, respectively, Mann-Whitney-Test). Also the CD4/CD8 ratio was significantly decreased in LP-DLBCL compared with GCB and Non-GCB type DLBCL (Figure (Figure3C,3C, p=0.0001 and p=0.0003, respectively, Mann-Whitney-Test). CD163 immunostaining confirmed a significantly higher amount of macrophages in LP-DLBCL compared to GCB and Non-GCB type DLBCL (Figure 3D, 3I, 3J p<0.0001 and p=0.0003, respectively, Mann-Whitney-Test).

Figure 3
The inflammatory infiltrate in LP-DLBCL shows a low CD4/CD8 ratio and a high content of macrophages

Host response in vitro reveals a MYC downregulation in the tumor cells

Since a strong host response signature was observed in GEP of LP-DLBCL, we aimed to simulate this situation in vitro by establishing a coculture model of lymphoma cells with T cell and monocyte fractions isolated from human peripheral blood mononuclear cells (PBMCs). Since no cell line representative for LP-DLBCL exists, the DEV cell line, which is the only available NLPHL cell line [20, 21], derived from a long standing NLPHL, was used. In order to avoid a major histocompatibility complex class I or class II (MHC-I or MHC-II)-mediated allogeneic anti-tumor reaction [22], DEV cells were tested for MHC expression. In line with previous studies [23, 24], neither MHC-I nor MHC-II expression was detected on DEV cells (Supplementary Figure S1). Therefore, MHC-unmatched PBMCs could be applied for coculture experiments. MHC expression on DEV cells was further monitored during coculture by flow cytometry, but remained negative (data not shown). The growth behavior of DEV cells was monitored over 7 days in monoculture or in coculture either with CD3-positive T cells or CD14-positive monocytes. Under both coculture conditions, DEV cells showed a growth arrest (Figure (Figure4A).4A). To further elucidate the mechanisms involved in growth suppression of DEV cells due to the presence of T cells and monocytes, GEP of DEV cells purified from 5 days-old cocultures was performed in comparison to corresponding monocultures. Interestingly, a coculture-induced switch in GEP was observed (Figure (Figure4B).4B). The most strongly upregulated genes after coculture with either T cells or monocytes were HSN2, controlling the transport of sodium and chloride ions [25], RAB3A, involved in exocytosis [26] and FABP3, regulating fatty acid metabolism [27] (Supplementary Table S2). In contrast, the most strongly downregulated transcripts were MYC, miR155 and P2RY14 (Supplementary Table S3). Of note, DEV cells isolated from cocultures did not show an enhanced expression of T cell or monocyte transcripts, confirming a highly efficient depletion of blood cells prior to GEP (Supplementary Figures S2 and S3).

Figure 4
Growth of the NLPHL cell line DEV is impaired in the presence of T cells or monocytes

Gene set characterization using the Genomatix Pathway System revealed several significantly enriched pathways, most of them being negatively regulated (Table (Table3).3). Among the top enriched and negatively regulated pathways were the E2F transcription factor network, validated targets of the MYC transcription factor, the MYB transcription factor network as well as cyclins and cell cycle regulation. A negative regulation of these pathways [28] is consistent with the observed reduced proliferation of DEV cells under coculture conditions. Downregulation of MYC was also confirmed on transcript and protein level in DEV cells after coculture (Figure 4C and 4D) and in 12/16 primary LP-DLBCL with > 90% MYC-negative tumor cells (Figure (Figure4E).4E). Surprisingly, there was no general enrichment of pro-apoptotic genes in the pathway analysis (nor in a heat map of pro-apoptotic genes, Supplementary Figure S4). In contrast, DEV cells showed a 2.4-fold upregulation of IL23A after coculture experiments, potentially explaining the reduced proliferative capacity of DEV cells, since IL23 was shown to inhibit cell proliferation of lymphoblastic leukemia cell lines in vitro [29].

Table 3
Top ten enriched canonical signaling pathways according to Genomatix Pathway System in DEV cells after coculture with T cells/monocytes

Inhibition of anti-lymphoma host response activation by PD-L1

Although we could not monitor an enhanced expression of MHC surface molecules on DEV cells by flow cytometry during the coculture experiments, MHC class II transcripts were upregulated in GEP (HLA-DRA 2.3- and HLA-DQB1 2.5-fold), pointing to a possible interaction of DEV cells with T cells. Interestingly, DEV cells also presented a 2.1-fold upregulation of CD274/PD-L1 after coculture experiments suggesting an inhibition of T cell activation in the coculture. A slight upregulation of CD274/PD-L1 was also confirmed on transcript (Figure (Figure4F)4F) and protein level (Figure (Figure4G).4G). To further investigate if this represents a general finding in LP-DLBCL, we tested 19 LP-DLBCL cases for PD-L1 expression by immunohistochemistry and observed in 12 cases (63%) a membrane bound expression in the tumor cells (Figure (Figure4H).4H). Therefore, PD-L1 was significantly more frequently expressed in LP-DLBCL than in DLBCL of the GCB type (2/22 cases) and of the Non-GCB type (3/26 cases, p<0.0001, Chi-Square-Test). In the PD-L1-negative cases, PD-L1 expression was mainly restricted to histiocytes in the microenvironment.

DISCUSSION

In the present study, GEP of a series of LP-DLBCL was performed and revealed a strong inflammatory host response, dominated by macrophages and cytotoxic T cells. A similar observation was made in a previous study by Monti et al. [19], when a large cohort of DLBCL not otherwise specified was investigated by GEP and a group with a prominent host response reaction was identified. In this group, particularly cases with features of T cell/histiocyte rich large B cell lymphoma (THRLBCL) were included. THRLBCL has previously been shown to have a large overlap with NLPHL [3033], but usually presents with a more aggressive behavior than typical NLPHL, like LP-DLBCL. Although Monti et al. investigated a completely different case series and also the array platforms differed, seven of the top 25 genes overexpressed in LP-DLBCL cases in the present study, were also identified in the previous host response signature. Furthermore, some of the top 25 transcripts identified in LP-DLBCL, like MT1H, C1QA, STAT1 and SOD2, were also shown to be expressed in the macrophages of THRLBCL [34, 35], suggesting a similar composition of the microenvironment in LP-DLBCL and THRLBCL. The strong overlap of microenvironment composition in LP-DLBCL and THRLBCL supports a close relationship between NLPHL, THRLBCL and LP-DLBCL, suggesting that THRLBCL might represent a transformation of NLPHL with reduced growth of the tumor cells and enhanced host response yielding a paucicellular pattern. Even in LP-DLBCL we could demonstrate a reduced tumor cell content compared with conventional DLBCL, however, not reaching below 10% as usually observed in THRLBCL [1].

A protective role of high numbers of CD8-positive T cells related to improved outcome was observed in DLBCL not otherwise specified [36]. It was furthermore observed that loss of HLA expression, B7 molecules and ICAM1 was associated with decreased infiltration of CD8-positive T cells in DLBCL [37]. And indeed, consistent with the high CD8 content in LP-DLBCL, 100% and 88% of cases were tested as positive for ICAM1 and HLA-DR expression by immunohistochemistry, respectively (data not shown). Likewise, THRLBCL has been described to have a relatively high CD8 content [38], which we also confirmed in a previous study [32]. THRLBCL may therefore represent the extreme form of LP-DLBCL with a maximum host response and slow tumor cell growth. These findings are somewhat contradictory to the usually observed aggressive clinical behavior in THRLBCL [30] and in a subset of cases of LP-DLBCL [10].

We also tried to model the prominent T cell- and macrophage-rich microenvironment of LP-DLBCL using the only available NLPHL cell line DEV [20, 39]. Despite DEV cells, as all cell lines, have acquired independence from their microenvironment, we made the observation that growth of DEV cells was hampered by the presence of T cells or monocytes, which could explain the reduced tumor cell content in LP-DLBCL next to a strong inflammatory background. Although we cannot exclude that reduced cell numbers of DEV cells after coculture were related to an increased rate of apoptosis, we could not prove this hypothesis in the data obtained from GEP. However, since GEP was performed on day 5, cell cycle arrest and growth inhibition may finally result in apoptosis at a later time point, suggested by a reduction of cell numbers in the growth curve clearly visible at day seven following a period of growth stagnation.

Taken together, the coculture conditions may represent environmental stress for DEV cells causing cell cycle arrest and growth inhibition via MYC downregulation. A lack of MYC expression was confirmed in the majority of LP-DLBCL tested, whereas in conventional DLBCL, around 50% of the cases show MYC expression in more than 30% of the tumor cells [40].

Since CD274/PD-L1 was upregulated in DEV cells after coculture and in LP-DLBCL biopsies, checkpoint inhibitors could prevent the exhaustion of the relative high number of CD8-positive T cells in the microenvironment [41] and patients with LP-DLBCL could particularly benefit from such therapies. These results are in line with a previous study, in which expression of PD-L1 was noted in 91% of THRLBCL [42]. In contrast, conventional DLBCL presented PD-L1 expression only in rare cases in the present study, similar to the results reported in a previous study [43]. The observation that LP-DLBCL show a high content of CD8-positive T cells in most cases and expression of PD-L1 in the tumor cells is similar to the situation observed in other tumors like melanoma, which can basically be divided into tumors with and without recruitment of CD8-positive T cells [44]. The more mutated neoantigens are expressed by a tumor, the more immunogenic appear the tumor cells to the host immune system [45, 46]. Hence, several ways exist to evade immune system-mediated tumor destruction: One way is modulation of cytokine secretion which restricts T cell infiltration, another one is immune escape by MHC-downregulation and a third one, which is likely to be responsible for immune escape in LP-DLBCL, is functional inhibition of infiltrating CD8-positive T cells by PD-L1- or IDO-mediated anergy [47]. In addition to our observation of PD-L1 expression in the tumor cells of LP-DLBCL, IDO has also been reported to be expressed in macrophages and dendritic cells in the microenvironment of THRLBCL [35]. Therefore, both LP-DLBCL and THRLBCL present a potent host anti-lymphoma reaction, which is functionally impaired through immune modulation by the tumor cells.

CONCLUSIONS

In conclusion, we observed a prominent host anti-lymphoma response in LP-DLBCL, which seems to be functionally impaired by PD-L1 expression of the tumor cells. Additional MYC downregulation in the tumor cells of LP-DLBCL possibly explains the low tumor cell content in these cases. Accelerating this ongoing anti-lymphoma reaction via immune checkpoint inhibitors may contribute to an improved survival of these patients.

MATERIALS AND METHODS

Gene expression analysis

Thirty-three primary cases of LP-DLBCL were collected in a previous study [9]. As control 11 DLBCL classified as GCB type and 9 DLBCL classified as Non-GCB type (Hans classifier [5]) were included. RNA was extracted using the RNeasy FFPE Microkit (Qiagen, Hilden, Germany). Since all cases showed partially degraded RNA profiles on an Agilent Bioanalyzer (Agilent, Waldbronn, Germany), a real time polymerase chain reaction (PCR) for GAPDH was performed after cDNA synthesis from 766 ng RNA with the High-capacity cDNA Reverse Transcription Kit (Applied Biosystems, Darmstadt, Germany). Cases with GAPDH Ct values above 30 proved to show insufficient quality when hybridized on gene expression arrays. Therefore, only cases with GAPDH values below 30 were further processed. Nine of the thirty-three LP-DLBCL qualified for the study according to their GAPDH values. Of these cases, 80 ng RNA were then transcribed using the NuGEN Ovation FFPE WTA System (NUGEN, Bemmel, The Netherlands). Gene arrays 1.0 (Affymetrix, Santa Clara, USA) were hybridized over night according to manufacturer's instructions. Data were analyzed as previously described [34]. Gene expression data are available through the GEO database (GSE84464). The local ethics committee of Frankfurt University Hospital agreed on the study (No. 39/14). For gene expression analysis of cultured cells, RNA was extracted using the RNeasy Mini Kit (Qiagen), amplified with the NUGEN Ovation Pico WTA System V2 (NUGEN) and hybridized onto Affymetrix Gene arrays 1.0. Gene expression data are available through the GEO database (GSE84688). Gene set characterization analysis was performed using the Genomatix Pathway System (Genomatix, Munich, Germany) at default parameters, listing all canonical pathways and biological terms with a significant enrichment of the provided input genes. Gene set enrichment analysis of the host response signature by Monti et al. [19] was performed according to http://software.broadinstitute.org/gsea/index.jsp [48, 49].

Immunohistochemistry, western blot and quantitative real time PCR

Genes of interest identified by GEP were validated on protein level by immunohistochemistry as described previously [50]. Antibodies, providers and dilutions are listed in Supplementary Table S4. LP-DLBCL, DLBCL classified as GCB type or Non-GCB type (Hans classifier [5]), were stained on tissue microarray format. Stained slides were scanned using the Aperio Scan Scope XT scanner (Aperio, Leica Biosystems, Wetzlar, Germany) at 40x magnification. Positivity was evaluated using the Aperio Image Scope software and the Aperio Positive Pixel Count Algorithm quantifying the positive pixel count at default settings. At default settings, the intensity limits establish three intensity ranges for classifying and summing positive pixel values. In order to avoid a staining intensity bias due to fixation artifacts we considered for our analysis the sum of all positive pixels (including weakly positive, positive and strongly positive pixels). Pixels which are stained but do not fall into the positive color specification are considered as negative. These pixels are counted as well, so that the fraction of all positive pixels to total pixels is given.

For comparison of the fraction of positive pixels between the groups, the Mann-Whitney-Test or t-test was used, depending on the presence of a Gaussian distribution (Shapiro-Wilk-normality test). For Western blot analysis, standard conditions were applied. Antibodies, providers and dilutions are listed in Supplementary Table S4. Western blot images were acquired with a Fusion SL (Peqlab, Erlagen, Germany). Quantitative real time PCR (rtPCR) was performed on an ABI Prism 7900HT Fast Real-Time PCR System (Life Technologies, Darmstadt, Germany) using previously published primers for GAPDH [51] with Power SYBR Green PCR Master Mix (Applied Biosystems). The following intron-spanning primers for MYC were created: Forward 5′-GCAGCTGCTTAGACGCTGG-3′, Reverse 5′-CTCCTCGTCGCAGTAGAAATACG-3′. PCR products were sequenced, validating that the correct PCR product had been amplified. The cycling program consisted of 95°C for 10 min, followed by 40 cycles of 95°C for 15 s/60°C for 1 min. Expression of PD-L1 transcripts was performed using Taqman Universal PCR Master Mix and Gene Expression Assays for PD-L1 and GAPDH (all Applied Biosystems). Fold changes were calculated using the 2−ΔΔCt method.

Functional experiments

The NLPHL cell line DEV was analyzed for MHC class I and II expression by flow cytometry using specific fluorophore-conjugated antibodies, anti-HLA-ABC-APC (clone G462.6, BD Pharmingen, Heidelberg, Germany), anti-HLA-DR, DP, DQ-FITC (clone Tu39, BD Pharmingen). The HL cell line KM-H2 was used as positive control. The DEV cell line was cocultured with CD3-positive T cells or CD14-positive monocytes isolated from PBMCs of healthy donors by Ficoll density gradient centrifugation as described previously [22]. Proportions of PBMCs were subjected to negative isolation of T cells using the Pan T Cell Isolation Kit (Miltenyi Biotec, Bergisch-Gladbach, Germany) or positive selection of monocytes with CD14 Micro Beads (Miltenyi Biotec). Purities of at least 90% were obtained after magnetic cell separation (MACS) as it was determined by staining of the enriched fractions for CD3 (T cells) or CD14 (monocytes) and subsequent flow cytometry analysis.

Tumor cells were cocultured with reactive bystander cells in a ratio of 1:10 (2 × 105 lymphoma cells and 2 × 106 blood cells) in six well plates. Cell numbers were determined every two to three days by flow cytometry-based cell counting from cocultures seeded in triplicates, recognizing tumor cells by their unique pattern in forward and side scatter (FSC and SSC) and excluding T cells and monocytes by staining for surface molecules. The cultures were supplied with fresh medium every two to three days after cell counting and if required splitted 1:2 or 1:3 depending on the cell density. For gene expression analysis, tumor cells were purified from cocultures at day five of coculture by MACS using anti-CD4-, anti-CD8- and anti-CD14 Micro Beads (Miltenyi Biotec). Efficient removal of blood cell fractions was confirmed by flow cytometry analysis obtaining purities of > 94.0% after coculture experiments (Supplementary Figure S3).

SUPPLEMENTARY FIGURES AND TABLES

Acknowledgments

The authors would like to thank Ralf Lieberz, Yvonne Michel, Katharina Sandkühler, Christiane Kehm and Tanja Schaffer-Horscht for excellent technical assistance.

This project was supported by the Deutsche Forschungsgemeinschaft grant number HA6145/1-2.

Footnotes

CONFLICTS OF INTEREST

The authors report no potential conflict of interest.

GRANT SUPPORT

Deutsche Forschungsgemeinschaft (DFG) grant number HA6145/1-2

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