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Oncotarget. 2016 December 27; 7(52): 86359–86373.
Published online 2016 November 17. doi:  10.18632/oncotarget.13411
PMCID: PMC5341330

An NK cell line (haNK) expressing high levels of granzyme and engineered to express the high affinity CD16 allele

Abstract

Natural killer (NK) cells are known to play a role in mediating innate immunity, in enhancing adaptive immune responses, and have been implicated in mediating anti-tumor responses via antibody-dependent cell-mediated cytotoxicity (ADCC) by reactivity of CD16 with the Fc region of human IgG1 antibodies. The NK-92 cell line, derived from a lymphoma patient, has previously been well characterized and adoptive transfer of irradiated NK-92 cells has demonstrated safety and shown preliminary evidence of clinical benefit in cancer patients. The NK-92 cell line, devoid of CD16, has now been engineered to express the high affinity (ha) CD16 V158 FcγRIIIa receptor, as well as engineered to express IL-2; IL-2 has been shown to replenish the granular stock of NK cells, leading to enhanced perforin- and granzyme-mediated lysis of tumor cells. The studies reported here show high levels of granzyme in haNK cells, and demonstrate the effects of irradiation of haNK cells on multiple phenotypic markers, viability, IL-2 production, and lysis of a spectrum of human tumor cells. Studies also compare endogenous irradiated haNK lysis of tumor cells with that of irradiated haNK-mediated ADCC using cetuximab, trastuzumab and pertuzumab monoclonal antibodies. These studies thus provide the rationale for the potential use of irradiated haNK cells in adoptive transfer studies for a range of human tumor types. Moreover, since only approximately 10% of humans are homozygous for the high affinity V CD16 allele, these studies also provide the rationale for the use of irradiated haNK cells in combination with IgG1 anti-tumor monoclonal antibodies.

Keywords: ADCC, NK lysis, immunotherapy, high affinity CD16, cetuximab

INTRODUCTION

Natural killer (NK) cells are essential in mediating innate immune responses and in the enhancement of the adaptive immune response [13]. In addition to these mechanisms, NK cells can play a role in anti-tumor immunity alone, or in combination with select antibodies via antibody-dependent cell-mediated cytotoxicity (ADCC). Several NK cell lines have been derived from patients with a range of different leukemias and lymphomas [4]. One such NK line, designated NK-92, derived from a patient with non-Hodgkin's lymphoma, has been previously well characterized [57]. NK-92 cells grow well in culture and are dependent on exogenous IL-2 for propagation. They also lack or have extremely low levels of the inhibitor killer immunoglobulin (Ig)-like receptors (KIR), which allows for lysis of tumor cells expressing major histocompatibility complex (MHC) molecules. Preclinical studies have shown that NK-92 cells do not form tumors when transplanted into severe combined immunodeficiency (SCID) or athymic mice.

Several clinical studies employing repeated infusions of irradiated NK-92 cells have been completed. Up to 10 billion cells/m2 have been infused with no severe side effects observed [8, 9]. Clinical responses have been observed in patients with melanoma, lung cancer, Merkel cell carcinoma, lymphoma, and kidney cancer [4, 8, 9]. Despite the allogeneic nature of NK-92 cells, the formation of anti-human leukocyte antigen (HLA) antibodies was seen in less than half of the patients. Moreover, the pharmacodynamics of NK-92 clearance did not differ upon repeated doses. NK-92 cells, however, do not express the CD16 Fc receptor, which is necessary for NK-mediated ADCC lysis of tumor cells employing monoclonal antibodies (MAbs) of the immunoglobulin G1 (IgG1) isotype. NK cells from healthy donors can express the endogenous alleles for the CD16 valine (V) high affinity Fc receptor FcγRIIIa (158V) only (V/V genotype), for the lower affinity phenylalanine (F) allele only (F/F genotype), or express both (V/F genotype). In vitro studies of donor NK cells, using tumor cells as targets, have generally shown higher levels of tumor cell cytotoxicity using NK cells from patients with the V/V genotype vs. NK cells from V/F or F/F genotypes.

Prior clinical studies [1013] employing the IgG1 isotype MAbs cetuximab (Erbitux), trastuzumab (Herceptin), or rituximab (Rituxan) have shown that colorectal cancer, breast cancer, and lymphoma patients, respectively, whose NK cells express CD16 V allele only (V/V), have improved overall survival compared to patients with NK cells expressing the V/F or F/F alleles. While there is no way to prove that the enhanced clinical benefit in the use of these monoclonals is, in part, contributed by the ADCC mechanism, the data remain somewhat compelling. One issue, however, is that only approximately 10% of the population is homozygous for the high affinity V allele [14].

NK-92 cells have now been engineered to express the CD16 high affinity FcγRIIIa (158V) receptor [15]. This modified NK-92 cell line has been designated haNK (high affinity NK). haNK cells have also been engineered to endogenously express IL-2 to circumvent the need for culture with exogenous IL-2. NK cells have previously been shown [16, 17] to be “serial killers,” in that a single NK cell can lyse multiple tumor cells. These studies have also shown [16, 17] that IL-2 can replenish the granular stock of NK cells leading to enhanced perforin- and granzyme-mediated lysis of “exhausted” NK cells.

The engineered CD16 high affinity Fc receptor and endogenous IL-2 in haNK cells may enhance the potential clinical utility of these cells. However, since the parent NK-92 cells were originally derived from a lymphoma patient, haNK cells will require lethal irradiation prior to any clinical use. This study is designed to describe the phenotype of haNK cells, and if changes in phenotype exist post-irradiation. Also described are the characteristics of the endogenous lytic activity in vitro of irradiated haNK cells toward a range of human tumor cells, and the use of irradiated haNK cells in ADCC-mediated lysis of tumor cells employing three widely used anti-tumor MAbs.

RESULTS

As described in the Methods section, NK-92 cells have been engineered to endogenously express IL-2. This enables haNK cells to be propagated in culture without the need to provide exogenous IL-2. As detailed previously [16], the addition of exogenous IL-2 also has the ability to replenish the granular stock of NK cells, leading to an increase in granzyme B content. As shown previously [18], NK-92 cells have considerably higher levels of endogenous granzyme when compared to NK cells or IL-22-activated NK cells. haNK cells have also been engineered to express the high affinity CD16 Fc receptor FcγRIIIa (158V). As shown in Figure Figure1A,1A, haNK cells express high levels of the CD16 158V variant, while the parent NK-92 cells do not. Figure Figure1B1B shows confocal images of haNK cell expression of CD16, CD56, NKG2D, and perforin.

Figure 1
Analyses of CD16 high affinity variant (V158) in haNK cells

As seen in Figure Figure2A,2A, haNK cells can reproducibly be passaged in culture while maintaining virtually 100% viability. Since the parental NK-92 cell line was derived from a lymphoma patient, viable haNK cells were analyzed for tumorigenicity by inoculation into athymic mice at both 106 and 107 cells/mouse and were monitored daily for 63 days for tumor formation. The MOLT-4, Raji, Reh, and Daudi leukemia/lymphoma cell lines were also inoculated similarly into athymic mice. As seen in Figure Figure2B,2B, while tumors arose in mice transplanted with other tumor cell lines, no tumors arose in mice transplanted with haNK cells. To ensure safety in any potential clinical use, haNK cells were irradiated at doses of 5-20 Gy and analyzed for subsequent proliferation via 3H-thymidine incorporation. As seen in Figure Figure2C,2C, doses of 5 Gy and above were sufficient to eliminate proliferation. The use of 10 Gy was thus chosen as the dose of radiation for subsequent studies. When analyzed daily by AO/PI staining, the percentage of viable haNK cells was reduced to zero at 7 days post-irradiation (Figure (Figure2D2D).

Figure 2
Characteristics of haNK cells before and after irradiation

haNK cells were also analyzed for endogenous IL-2 production post-10 Gy irradiation. As seen in Figure Figure2E,2E, irradiated haNK cells continued to produce levels of IL-2 comparable to non-irradiated haNK cells, and both non-irradiated and irradiated haNK cells continued to produce IL-2 for at least 48 h. In addition, irradiated haNK cells continued to produce IFN-γ and IL-8 for at least 48 h. Studies were then conducted to determine if irradiated haNK cells maintained cytotoxicity. As seen in Figure Figure2F,2F, non-irradiated haNK cells efficiently lysed human H441 lung carcinoma cells and human SKOV3 ovarian carcinoma cells, respectively, at various effector to target (E:T) ratios (gray squares). Irradiated haNK cells (blue circles) maintained cytotoxic ability for both of these tumor cell lines, but at approximately 20% lower cytotoxic levels at the various E:T ratios compared to intact haNK cells.

Since the effect of irradiation on stress of NK cells is unknown, the lytic potential of haNK cells immediately (approximately 1 h) after irradiation vs. 24 h post-irradiation was examined. While no difference was observed in lytic ability of haNK cells at 1 h vs. 24 h post-irradiation using H460 human lung carcinoma cells as targets (Figure (Figure3A),3A), there were substantial differences using four other human carcinoma cell lines as well as K562 cells as targets, with haNK cells 24 h post-irradiation showing greater lytic activity at all E:T ratios compared to immediately after radiation (Figure 3B–3F). Subsequent studies with haNK cells were thus conducted approximately 24 h post-irradiation.

Figure 3
Comparison of tumor cell lysis by haNK cells 1 h vs. 24 h post-irradiation

We then interrogated the effect of 10 Gy on the haNK cell phenotype 24 h post-irradiation. As seen in the histograms of Figure Figure4,4, the major markers of NK cells did not change post-irradiation, including CD56, CD16, NKG2D; levels of granzyme B, perforin, CD107a, as well as Ki67 and NKp30 also did not change. There was an increase post-irradiation, however, in the levels of NKp44, programmed cell death protein-1 ligand (PD-L1) and programmed cell death protein-1 (PD-1). The potential significance of these changes post-irradiation will be discussed below. The quantification in terms of the percentage of cells positive and mean fluorescence intensity (MFI; in parentheses) of the various markers analyzed via histograms is shown in the lower panel of Figure Figure4,4, along with those of several other phenotypic markers.

Figure 4
Phenotyping of haNK cells with and without irradiation

The ability of irradiated haNK cells to lyse 13 human tumor cell lines was analyzed, including lung (n = 5), colon (n = 3), breast, cervical, ovarian and pancreatic carcinoma lines, and a chordoma cell line. As seen in Figure 5A–5L, various degrees of lysis of the 12 human tumor cell lines was observed; however, no lysis of the human pancreatic cell line ASPC-1 could be achieved at any E:T ratio (Figure (Figure5E,5E, squares).

Figure 5
haNK lysis of human tumor cell lines

The potential reason(s) for differences in the percentage of lysis seen with irradiated haNK cells using different tumor cell lines was investigated. The percentage of lysis by haNK cells at a 10:1 ratio of eight carcinoma cell lines was evaluated relative to the tumor cell lines’ expression of MHC class I chain-related protein A (MICA), PD-L1, and MHC class I, both in terms of percentage of cells expressing each marker and MFI. In Table Table1,1, cells are ranked by percentage of haNK cell lysis. While there are trends in tumor cell lysis with higher levels of MICA and PD-L1 expression, there are clear outliers. The ASPC-1 line, which could not be lysed by haNK cells in numerous experiments, did show the lowest levels of both MICA and PD-L1 expression.

Table 1
Tumor cell lysis by irradiated haNK cells, and tumor cell expression of MICA, PD-L1, and MHC class I

To compare the killing potential of haNK cells to NK cells from healthy blood donors, we utilized MDA-MB-231 breast cancer cells as tumor targets, and NK cells from three healthy donors or haNK cells as effector cells. To determine the number of targets killed per effector cell, we used an 111In release assay at low E:T ratios in order for each effector cell to have access to excess target cells. As seen in Figure Figure6A,6A, there were low levels of specific lysis mediated by NK cells from healthy donors at all E:T ratios. There were substantially greater levels of lysis observed from haNK cells at each ratio. Analysis of the killing frequency of NK cells from multiple donors demonstrated that on average 12 NK cells were required to kill one tumor target cell (Figure (Figure6B).6B). In contrast, only 4 haNK cells were required to kill one tumor target cell (P = 0.004), likely due to a greater probability for an individual effector cell to form contacts with target cells at lower E:T ratios.

Figure 6
haNK cells have a higher killing frequency than healthy donor NK cells

Since haNK cells are engineered to express the CD16 high affinity FcγRIIIa receptor, one potential clinical utility would be the combined use of haNK cells with humanized or chimeric IgG1 anti-tumor MAbs. The binding of the anti-epidermal growth factor receptor (EGF-R) monoclonal antibody cetuximab (IgG1) to haNK cells was compared to the binding to NK cells of three healthy donors expressing homologous F/F alleles, and one donor expressing the high avidity V/V allele. Unfortunately, only one V/V donor was available since, as mentioned above, only approximately 10% of the population homozygously carries this allele [4, 14]. As seen in Figure Figure7A,7A, the cetuximab EC50 binding and its calculated relative affinities for NK cells from the donor expressing the V/V allele and for haNK cells was approximately 4.8 and 3.4 times higher, respectively, than the binding to NK cells from the three donors expressing the F/F allele. Also note the variance in the EC50 binding to cetuximab seen with the NK cells from the three F/F donors.

Figure 7
Comparative affinities of CD16 allotypes and factors influencing haNK-mediated lysis

ADCC of tumor cells is dependent in part on the interaction of CD16 of the effector cell with the Fc receptor of the anti-tumor IgG1 antibody. As seen in Figure Figure7B,7B, the lytic activity of irradiated haNK cells on human lung carcinoma cells is enhanced by the addition of cetuximab. While the addition of a blocking anti-CD16 antibody did not reduce the lysis of the endogenous haNK lytic activity (isotype control Ab), it did reduce the level of cetuximab-mediated lysis (P < 0.01). In a separate series of studies, cetuximab again enhanced haNK endogenous lysis of lung cancer cells not seen with the addition of an isotype control antibody (Figure (Figure7C).7C). Concanamycin A (CMA) is known to inhibit perforin-mediated cell lysis. The addition of CMA greatly inhibited both the endogenous haNK lysis as well as the cetuximab-mediated ADCC (P < 0.001, Figure Figure7C).7C). Experiments have also shown that haNK cells express less than 0.2% FasL. Taken together, these studies show that haNK tumor cell lysis alone, and via the ADCC mechanism, is mediated exclusively by perforin/granzyme.

Since NK cells have previously been shown to be “serial killers,” i.e., one NK cell can lyse multiple target cells, both 4-h and 18-h 111In-release assays were carried out using irradiated haNK cells, plus or minus various concentrations of cetuximab. Employing the 4-h assay, both endogenous haNK lysis and cetuximab-mediated ADCC were very low using the cervical (CaSki) and ovarian (SKOV3) carcinoma cell lines as targets. Endogenous haNK lysis was improved using the 18-h assay, and the cetuximab-mediated ADCC further improved the levels of lysis in both cell lines in the 18-h assays (Figure (Figure8A8A and and8B).8B). Figure Figure8C8C provides further evidence that the addition of cetuximab to the haNK cell lysis is mediated by ADCC since little or no lysis was observed using cetuximab alone. Using the 18-h assay, the lysis of three additional lung carcinoma cell lines was observed with irradiated haNK cells, which was also improved with the addition of cetuximab and not isotype control antibody (Figure 8D–8F).

Figure 8
haNK ADCC mediated by cetuximab was evaluated with 4 h and 18 h 111In-release assays

We also evaluated the effects on haNK-mediated ADCC with two different IgG1 MAbs used in the therapy of breast cancer: trastuzumab (Herceptin) and pertuzumab (Perjeta). Using MDA-MB-453 human breast carcinoma cells as targets, both endogenous lytic activity of irradiated haNK cells and ADCC activity mediated by both monoclonal antibodies were enhanced in the 18-h vs. 4-h assay (Figure (Figure9A9A and and9B).9B). In the 18-h assays, the addition of either trastuzumab (Figure (Figure9A)9A) or pertuzumab (Figure (Figure9B)9B) greatly enhanced the lytic activity of haNK compared to the use of the isotype control antibody. Thus the use of three different antibodies directed against two diverse targets (EGF-R and human epidermal growth factor receptor 2 (HER2)) was shown to enhance the lytic activity of irradiated haNK cells.

Figure 9
haNK cell ADCC mediated by trastuzumab and pertuzumab was evaluated with 4 h and 18 h 111In-release assays

DISCUSSION

These studies describe the differences between haNK cells and the parental NK-92 cells in terms of the expression of the high affinity CD16 158V allele, and demonstrate high levels of granzyme and perforin in haNK cells. The lack of tumorigenicity of haNK cells in athymic mice and the kinetics of haNK cell growth in culture are also described. The kinetics of eliminating haNK viability by irradiation is described here for potential clinical utility. These results are similar to those observed with the parental NK-92 line [18, 19]. In preliminary experiments showing anti-tumor effects, 107 111In-labeled irradiated haNK cells were injected i.v. in nu/nu mice bearing a human lung xenograft; approximately 2% ID/g was observed in tumor at 21 h, while the majority of cells accumulated in spleen and liver. haNK cells are shown to continue to produce IL-2 for 48 h post-irradiation; the levels of IL-2 produced by these cells are in the pg range and thus should not pose safety concerns. Nonetheless, dose escalating Phase I studies using irradiated haNK cells will involve careful monitoring of both serum cytokines and any changes in numerous peripheral immune cell subsets [20, 21] in addition to standard clinical analyses. The data presented here also show that the endogenous lytic ability of haNK cells is reduced immediately after irradiation (Figure (Figure3),3), but returns to levels similar to non-irradiated haNK cells at 24 h (Figure (Figure2F2F).

While most phenotypic markers such as CD56, CD16, NKG2D, Ki67, CD107a, and granzyme and perforin did not change with haNK irradiation, irradiated haNK cells did show enhanced expression of NKp44, PD-1, and PD-L1. NKp44 is a triggering receptor specifically expressed by activated NK cells. It is upregulated by IL-2, and mediates non-MHC-restricted tumor cell lysis [22]. PD-1 expression on NK cells is associated with activation and exhaustion. Previous studies have shown that subsets of NK cells expressing PD-1 display lower IFN-γ MFI and degranulation [23], which can be reverted by PD-1 blockade [23, 24]. In spite of the observed increase in PD-L1 expression after irradiation, there was no haNK fratricide of haNK cells induced by incubation with an IgG1 anti-PD-L1 antibody (unpublished data). In addition, we evaluated the expression of three activating and/or inhibitory KIR (CD158a, CD158d and CD158j), and found all to be below the detection limit. It should be noted that multiple phenotypic analyses have been carried out using different passages of haNK, different densities of haNK in culture, and haNK cells shipped under different conditions. There were minor differences observed in haNK phenotype as a consequence of the above situations; thus the data presented in Figure Figure44 should be considered representative and not absolute. Process development studies are underway to best standardize the phenotype of irradiated haNK cells.

Irradiated haNK cells (24 h post-irradiation) were also assayed for lytic activity in both 4-h and 18-h 111In-release assays; three of three human carcinoma cell lines showed greater levels of lysis in the 18-h assay (Figures (Figures88 and and9).9). This result is compatible with the previously published results [16, 17] that NK cells are “serial killers.” We observed that on a per-cell basis, haNK cells had a 3-fold higher killing frequency than the average killing frequency of NK cells from three healthy donors (Figure (Figure6).6). These data extend the observations of Bhat et al. where quality of effector cells was directly proportional to the killing frequency rate [16].

In this study, 21 of 22 different human tumor cell lines are shown (Figures (Figures2,2, ,3,3, ,5,5, ,6,6, ,7,7, ,8,8, ,9,9, Table Table1)1) to be lysed by haNK cells in vitro, including lung, head and neck, colon, breast, bladder, cervical, and ovarian carcinoma lines, and a chordoma cell line; a range of lysis was observed among lines. Some of the phenotypic characteristics of eight of these lines were analyzed. While there were trends in lysis correlating with increased MICA and PD-L1 expression, and decreased MHC class I expression, none were statistically significant (Table (Table1).1). Future studies are planned to analyze a range of human tumor cell lines by total RNA sequence and proteome to help identify which tumor cells, and eventually which tumors, are most susceptible to haNK-mediated lysis.

The insertion of the high affinity CD16 FcγRIIIa (158V) allele into haNK cells renders them capable of mediating ADCC. Humanized or chimeric MAb of the IgG1 isotype is the only isotype capable of mediating ADCC. It is of interest to note that four of the most widely used MAbs in cancer therapy are of this IgG1 isotype: cetuximab targeting the EGF-R in colorectal, head and neck, and lung carcinomas, rituximab targeting CD20 in lymphoma, and trastuzumab and pertuzumab targeting HER2/neu in breast carcinoma. As mentioned above, prior studies exist indicating potential ADCC involvement in the clinical activity of these antibodies in addition to the mechanism of receptor-ligand interactions, especially in the approximately 10% of patients who are homozygous for the V/V allele. It should be pointed out that prior studies [2530] reported variable percentages in the frequency of the V/V allotype, ranging from approximately 8% to 30%. The differences reported could be due to the population analyzed; on the other hand, another study [31] reported that this variation is most likely due to differences in the methods employed, and analyses of samples from 42 donors in this study indicated a V/V allotype frequency of 14.3%. Studies in our own laboratory of peripheral blood mononuclear cells (PBMCs) of 70 donors showed a V/V allotype frequency of 8.8%. The adoptive transfer of irradiated haNK cells in combination with any of these monoclonals would add the V/V component to enhance ADCC-mediated tumor cell lysis. Obviously, well-controlled randomized studies will be required to analyze this possibility.

Ongoing preclinical studies and future clinical studies will undoubtedly use combinations of different cancer immunotherapy platforms, including anti-tumor MAbs, vaccines, checkpoint inhibitors, and immune modulators, to enhance effector functions or reduce or eliminate immunosuppressive entities. The studies described here are designed to provide a rationale for the use of irradiated haNK cells as a potential cancer immunotherapeutic, first as a single agent but, more importantly, in combination with either standard-of-care therapeutics or other immunotherapeutic modalities.

MATERIALS AND METHODS

Cell lines and cultures

The parental cell line NK-92 was originally established from a male 50-year-old patient with non-Hodgkin's lymphoma, whose bone marrow was infiltrated with large granular lymphocytes (LGL) [6]. NK-92 has consistently shown high antitumor cytotoxicity, and has been infused into approximately 50 cancer patients with clinical benefit and minimal side effects [4]. The NK-92 parental cell line is dependent on IL-2 for proliferation, and was therefore genetically modified to produce IL-2 in an autocrine loop, as well as to express a high affinity variant (158V) of the CD16 FcγRIII, in order to have a capacity for ADCC in addition to NK lysis [4, 15]. haNK cells were created by electroporation of NK-92 cells with a plasmid designed to co-express both CD16 (158V) and an internally retained form of IL-2 (ERIL-2) as a single bicistronic transcript. Expression of ERIL-2 haNK enables cell proliferation in the absence of IL-2 in the medium, and haNK cells can thus be continuously cultured in medium without IL-2 supplement. Stable expression of CD16 (158V) was maintained for over 3 months. haNK cells were provided through a Cooperative Research and Development Agreement (CRADA) between the NCI and NantBioScience (Culver City, CA). haNK cells were cultured in phenol-red free and gentamycin-free X-Vivo-10 medium (Lonza, Walkersville, MD) supplemented with 5% heat-inactivated human AB serum (Omega Scientific, Tarzana, CA) at a concentration of 5 × 105/ml. Human tumor cell lines (H441, SKOV3, K562, H460, H1703, HCC4006, H520, SUM149, A549, ASPC-1, CaSki, SW480, Colo205, Caco2, MCF7, MUG-Chor1, HTB1, SW403, MDA-MB-231, MDA-MB-453, HN12, HN4, and HN30) were purchased from American Type Culture Collection (Manassas, VA). All cultures were free of mycoplasma and maintained in RPMI-1640 supplemented with 10% FCS, 100 U/ml penicillin, 100 μg/ml streptomycin, and 2 mM L-glutamine (Mediatech, Herndon, VA), except HN12, HN4, and HN30, which were cultured in DMEM (Mediatech). PBMCs from healthy donors were obtained from the NIH Clinical Center Blood Bank (NCT00001846).

Immunofluorescence imaging

Live haNK cells were added to Cell-Tak (Corning, Bedford, MA) coated microscope slides at a concentration of 1 × 105 cells per slide and incubated for 20 min. All incubations were performed at room temperature. Slides were tilted to remove excess cells and immediately fixed in 3% paraformaldehyde in PBS for 15 min. The slide stained with anti-CD16 (mouse) antibody was immediately blocked with PBS containing 3% bovine serum albumin (PBS-3% BSA). All other slides were permeabilized in 0.05% Triton-X100 in PBS for 15 min, then blocked in PBS-3% BSA for 30 min. Primary antibodies were added at the following dilutions in PBS-3% BSA for 2 h: anti-CD56 (mouse), anti-CD16 (mouse), anti-NKG2D (goat) were all obtained from Santa Cruz Biotech (Dallas, TX) and used at 1:500; anti-perforin (mouse, eBioscience, San Diego, CA) and anti-tubulin (mouse, Thermo Fisher Scientific, Rockford, IL) were both used at 1:250. Alexa Fluor 488, 568, and 647 conjugated secondary antibodies were obtained from Thermo Fisher Scientific and used at 1:1000 in PBS-3% BSA for 45 min. The Phalloiden 488 F-actin stain was added with the secondary antibodies at 5 μl per test. After secondary antibodies were removed, CellMask Deep Red Plasma membrane stain (Thermo Fisher Scientific) was added at 1:5000 in PBS for 15 min. Coverslips were mounted onto slides with ProLong gold antifade mountant with DAPI (Thermo Fisher Scientific) and allowed to dry overnight before imaging on a Zeiss LSM 710 NLO confocal microscopy system (Carl Zeiss Inc., Thornwood, NY).

Evaluation of the tumorigenic potential of non-irradiated haNK cells

Male athymic nude mice (Taconic Biosciences, Hudson, NY) were injected s.c. with 106 or 107 tumor cells or non-irradiated haNK cells, and monitored daily for the presence of tumors at injection sites. The tumor cell lines were: MOLT-4 (acute lymphoblastic T-cell leukemia), Raji (Burkitt's lymphoma), Reh (acute lymphoblastic non-T/non-B cell leukemia), and Daudi (Burkitt's lymphoma). At study conclusion (day 63) the number of resultant viable tumors (≥ 50 mm3) was quantified for each tumor cell line and cell number injected.

Evaluation of haNK cell viability and cytokine production

haNK cell proliferation after irradiation was evaluated by 3H-thymidine incorporation by pulsing the cells with 3H-thymidine for 4 h at 24 h, 48 h, and 72 h post-irradiation. The cells were then lysed for measurement of 3H incorporation. haNK cell viability was continuously monitored using dual-fluorescence for live/dead cells with acridine orange/propidium iodide (AO/PI) staining on a Cellometer Auto 2000 (Nexcelom, San Mateo, CA), according to the manufacturer's instructions. Release of IL-2 into culture supernatants was measured with an ELISA kit (AllCells, Alameda, CA).

Antibodies and flow cytometric analysis

The cetuximab (Bristol-Myers Squibb, New York, NY), trastuzumab (Genentech, San Francisco, CA), pertuzumab (Genentech) and isotype (rituximab, Genentech) antibodies were purchased from the National Institutes of Health Pharmacy. Flow cytometry of haNK cells was performed on a BD LSRII flow cytometer (BD Biosciences, San Jose, CA) and analyzed in FlowJo 9.9 (TreeStar Inc., Ashland, OR). Flow cytometry of tumor cells was performed on a BD FACSVerse flow cytometer (BD Biosciences) and analyzed in BD FACSuite (BD Biosciences). Staining of haNK cells was performed with four panels, and the antibodies used were: anti-CD56-PerCP-Cy5.5, anti-CD16-APC-Cy7, anti-NKG2D-APC, anti-NKG2D-FITC, anti-CD107a-PE-Cy7, anti-GranzymeB-FITC, anti-perforin-APC, anti-NKp46-PE-Cy7, anti-NKp30-APC, anti-NKp44-PE, anti-2B4-FITC, anti-CD158a-PE, anti-CD158d-PE, anti-CD158j-APC, anti-PD-1-PE-Cy7, anti-PD-L1-APC, and anti-MICA-PE; all were obtained from BioLegend (San Diego, CA). Anti-CD56-PE, anti-CD16-PE-Cy7, CD11a-PE, Ki67-FITC, anti-HLA-ABC-FITC and anti-4-1BB-BV421 were obtained from BD Biosciences. In controlled experiments to detect CD16 on haNK cells, the anti-CD16 MAb was CD16-FITC (BD Biosciences) and the isotype control antibody was MIgG1k-FITC (BD Biosciences).

NK lysis, ADCC, and blocking experiments

haNK cells were used as effectors in lysis assays non-irradiated, or irradiated (10 Gy) and assayed immediately post-irradiation or after 24 h, as specified for each experiment.

Lysis assays were performed for 4 h and 18 h, with either an 111In-release assay or calcein AM staining and analysis on a CeligoS instrument (Nexcelom, San Mateo, CA). For the 111In-release assays, target cells were labeled with 20 μCi of 111In-oxyquinoline (GE Healthcare, Chicago, IL) at 37°C for 20 min and used as targets at 3,000 cells/well in a 96-well round-bottom culture plate at various E:T ratios. For NK lysis experiments, haNK cells were added to the wells immediately after the target cells. For ADCC experiments, the targets were first incubated for 30 min with the MAbs before the haNKs were added, as previously described [32]. The plates were incubated for 4 h or 18 h at 37°C in a humidified atmosphere containing 5% CO2, then harvested and counted on a Wizard2 gamma counter (PerkinElmer, Shelton, CT). All samples were tested in triplicate and specific lysis was calculated from the average. Spontaneous release was determined by incubating targets with medium alone; complete lysis was determined by incubating targets with 0.05% Triton X-100 (Sigma-Aldrich, St. Louis, MO). Specific lysis was determined using the following equation:

Percent lysis = (experimental − spontaneous)/(complete − spontaneous) × 100.

For analysis on the CeligoS instrument, target cells were stained with calcein AM (10 μM) for 30 min at 37°C, washed and plated at 2-3,000 cells/well in a 96-well black plate with clear bottom according to the manufacturer's instructions. After the cells had adhered for 2 h, haNK cells were added, and the plate was incubated for 4 h or 18 h. Complete lysis was attained with 0.05% Triton X-100, and propidium iodide was added immediately before reading on the CeligoS instrument to evaluate cell death.

For killing frequency experiments, human NK cells were purified from three healthy blood donors by negative selection (Miltenyi Biotech, San Diego, CA) and rested at 37°C for 24 h. haNK cells were irradiated (10 Gy) and assayed after 24 h. NK or haNK cells were co-incubated with 111In-labeled MDA-MB-231 (breast cancer) target cells at low E:T ratios for 18 h.

For the blocking experiments, irradiated haNK cells were pre-incubated for 2 h with either anti-CD16 antibody (50 μg/ml, BD Biosciences) or concanamycin A (CMA; 200 nM, Sigma-Aldrich, St. Louis, MO) before being used in lysis assays with the H460 human lung carcinoma cell line as a target at a 20:1 E:T ratio. Both NK lysis and ADCC mediated by cetuximab (10 μg/ml) were performed in 18-h 111In release assays.

CD16 (FcγRIIIa) genotyping

DNA was extracted from PBMCs of four healthy donors using a QIAamp DNA Blood Mini kit (Qiagen, Valencia, CA), and stored at −80°C until use. The polymorphism of CD16 at amino acid position 158 that is a valine vs. phenylalanine was determined using allele-specific droplet digital polymerase chain reaction (ddPCR) employing the TaqMan array for CD16 (rs396991; Life Technologies, Waltham, MA) [31, 33, 34]. A master reaction mix was prepared, and 1 mL of genotyping DNA was added. The PCR reaction was performed on a Bio-Rad T100 thermal cycler (Bio-Rad, Hercules, CA) for 40 cycles at 95°C for 10 min, 94°C for 30 sec, and 60°C for 1 min. The plate was read on a Bio-Rad QX200 droplet reader. Data were analyzed with Bio-Rad QuantaSoft v.1.5 software.

Evaluation of CD16 binding affinity

NK cells from homozygous FF and VV healthy donors were isolated using the Human NK Cell Isolation (negative selection) Kit 130-092-657 (Miltenyi Biotech, San Diego, CA) following the manufacturer's instructions, resulting in > 90% purity. Purified NK cells or haNK cells were incubated with varying concentrations of cetuximab for 30 min at 4°C followed by FITC-conjugated anti-CD16 3G8 MAb, and then analyzed by flow cytometry. Percentages of inhibition of 3G8 binding were calculated and the results are expressed as the effective MAb concentration to achieve 50% inhibition of 3G8 MAb binding to NK cells (EC50) [35].

Statistical analyses

Statistical analyses were performed in GraphPad Prism 6, using multiple T-tests, with a desired false discovery rate of 1.00%.

Acknowledgments

The authors thank Dr. Romaine I. Fernando and Kimberly T. Branigan for her technical assistance. The authors also thank Debra Weingarten for her editorial assistance in the preparation of this manuscript.

Footnotes

CONFLICTS OF INTEREST

Laboratory of Tumor Immunology And Biology, National Cancer Institute

The authors have no potential conflicts of interest to disclose. The Laboratory of Tumor Immunology and Biology, National Cancer Institute, has a Cooperative Research and Development Agreement (CRADA) with NantBioScience.

Immune Cell Development And Host Defense Program, Institute For Cancer Research, Fox Chase Cancer Center

No potential conflicts of interest to disclose.

NantBioScience, Inc., Affiliates

Hans Klingemann and Laurent Boissel are employees of NantKwest. Patrick Soon-Shiong is a founder and an executive at NantKwest and NantCell, Shahrooz Rabizadeh is a contributor to NantCell.

FUNDING

This research was supported by the Intramural Research Program of the Center for Cancer Research, National Cancer Institute, NIH, as well as through a Cooperative Research and Development Agreement (CRADA) between NantBioScience and the National Cancer Institute.

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