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Logo of chemcenjChemistry Central Journal
Chem Cent J. 2017; 11: 20.
Published online 2017 February 28. doi:  10.1186/s13065-017-0250-z
PMCID: PMC5331027

Synthesis and protective effect of new ligustrazine-vanillic acid derivatives against CoCl2-induced neurotoxicity in differentiated PC12 cells


Ligustrazine-vanillic acid derivatives had been reported to exhibit promising neuroprotective activities. In our continuous effort to develop new ligustrazine derivatives with neuroprotective effects, we attempted the synthesis of several ligustrazine-vanillic acid amide derivatives and screened their protective effect on the injured PC12 cells damaged by CoCl2. The results showed that most of the newly synthesized derivatives exhibited higher activity than ligustrazine, of which, compound VA-06 displayed the highest potency with EC50 values of 17.39 ± 1.34 μM. Structure-activity relationships were briefly discussed.

Graphical abstract

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New series of ligustrazine-vanillic acid amide derivatives were synthesized and evaluated for their protective effect on the injured PC12 cells damaged by CoCl2. VA-06 was found to be the most active one

Keywords: T-VA amide derivatives, Neuroprotective effect, Synthesis, PC12 cell


Ischemic stroke is one of the leading causes of death and disability in the world [13]. It is clear that even a brief ischemic stroke may trigger complex cellular events that ultimately lead to the neuronal cell death and loss of neuronal function [1, 4, 5]. Although remarkable progress has been made in treating stroke, effective approaches to recover damaged nerve are not yet to be found [69]. Therefore, it is necessary to develop new generation of neuroprotective agents with neural repair-promoting effect.

Ligustrazine (tetramethylpyrazine, TMP) (Fig. 1) is a major effective component of the traditional Chinese medicine Chuanxiong (Ligusticum chuanxiong hort), which is currently widely used in clinic for the treatment of stroke in China. It has been reported to show beneficial effect on ischemic brain injury in animal experiments and in clinical practice [1014].

Fig. 1
Structures of TMP and T-VA

Meanwhile previous studies showed that many of aromatic acids, such as vanillic acid, protocatechuic acid, salicylic acid, exhibited interesting neuroprotective activity [1519]. In our previous effort to develop new neuroprotective lead compounds, inspired by the potent bioactivities of TMP and aromatic acids on neuroprotection, we designed and synthesized several series of ligustrazine derivatives by incorporation of ligustrazine with aromatic acids. The neuroprotective activity detection revealed that some compounds presented potent protective effects on injured differentiated PC12 cells, of which T-VA (3,5,6-trimethylpyrazin-2-yl)methyl3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzoate) (Fig. 1) exhibited high potency with EC50 values of 4.249 µM [2022]. Meanwhile, recent research has demonstrated that T-VA exerted neuroprotective in a rat model of ischemic stroke [23].

In continuation of our research, we decided to undertake a study of the ligustrazinyl amides, because amides relatively have metabolic stability when compared to ligustrazinyl esters [24]. In this study, we reported the design, synthesis of the novel T-VA amide analogues containing different types of amide fragments, as well as in vitro neuroprotective activities screening on the injured PC12 cells. And the structure-activity relationships (SARs) of these novel compounds were also briefly discussed.

Results and discussion


All the target compounds were synthesized via the routes outlined in Scheme 1. The key intermediate (3,5,6-trimethylpyrazin-2-yl)methanol (1) was prepared according to our previous study [25]. As shown in Scheme 1, compound 1 underwent sulfonylation reaction with 4-toluene sulfonyl chloride to afford the intermediate 2. Starting from vanillic acid, the intermediate 3 was prepared by reacting vanillic acid with methyl alcohol and thionyl chloride. Then the intermediate 3 were reacted with the intermediate 2 in N,N-Dimethylformamide (DMF) in the presence of potassium carbonate to afford the compound VA-01, which was then hydrolyzed under alkaline conditions to give the target compound VA-02.

Scheme 1
Synthesis of the ligustrazine-vanillic acid derivative VA-01VA-20. Reagents and Conditions: a dry THF, KOH, 4-toluene sulfonyl chloride (Tscl), 25 °C, 15 h; b thionyl chloride (SOCl2), 25 °C, 15 h; ...

The derivatives VA-03VA-23 were successfully obtained by coupling VA-02 with various amines in the presence of 1-[3-(dimethylamino) propyl]-3-ethyl-carbodiimide hydrochloride (EDCI), diisopropylethylamine (DIPEA) and 1-hydroxybenzotriazole (HOBt) in CH2Cl2. The structures of all the target compounds (Table 1) were confirmed by spectral (1H-NMR, 13C-NMR) analysis and high resolution mass spectrometry (HRMS).

Table 1
The structures of ligustrazine derivatives VA-01VA-20 An external file that holds a picture, illustration, etc.
Object name is 13065_2017_250_Figb_HTML.gif

Protective effect on injured PC12 Cells

Setting ligustrazine and T-VA as the positive control drug, the neuroprotective activity of target compounds was evaluated on the neuronal-like PC12 cells damaged by CoCl2. The results, expressed as proliferation rate (%) at different concentration and EC50, were summarized in Table 2. As shown in Table 2, most of the ligustrazine-vanillic acid amide derivatives showed better protective effects than the positive control drug TMP (EC50 = 64.35 ± 1.47 µM) on injured differentiated PC12 cells. Among the candidates, the compound VA-06 exhibited the most potent neuroprotective activity with EC50 values of 17.39 ± 1.34 µM.

Table 2
The EC50 of the ligustrazine-vanillic acid amide derivatives for protecting damaged PC12 cells

From the obtained results, it was observed that esterification at the carboxylic group of vanillic acid may contribute to enhance the neuroprotective activity, such as VA-01 > VA-02. This was in agreement with our previous research [20]. It should be noticed that introduction of a large lipophilic aromatic amine residue leaded to complete loss of neuroprotective activity (with exception of VA-06), such as VA-13VA-16. But the compounds that introduced an aromatic amine residue at the carboxylic group of vanillic acid performed better neuroprotective activities than VA-02 without any group substituted, such as VA-03, VA-04, VA-05, VA-08 > VA-02. Furthermore, the structure-activity relationship analysis among the T-VA aromatic amide derivatives revealed that the neuroprotective activities were mainly influenced by the type, but not the alkyl chain length of amine substituents, as exemplify by VA-04 > VA-03, VA-05. Although none of the newly synthesized T-VA derivatives showed more effect than the positive control drug T-VA, the structure-activity relationship (SAR) analysis above provided important information for further design of new neuroprotective ligustrazine derivatives.

Protective effect of VA-06 on injured PC12 cells

To further characterize the protective effect of VA-06 on injured PC12 cells, the cell morphology changes were observed under an optical microscopy. As shown in Fig. 2, the morphology of undifferentiated PC12 cells was normal, the cells were small and proliferated to form clone-like cell clusters without neural characteristics (Fig. 2A); By exposure to NGF, normal differentiated PC12 cells showed round cell bodies with fine dendritic networks similar to those nerve cells (Fig. 2B). Moreover, the mean value expressed as percent of neurite-bearing cells in NGF treated cells was 65.4% (Fig. 3). When the differentiated PC12 cells treated with 250 mM CoCl2 for 12 h, almost all cells showed typical morphological changes such as cell body shrinkage and the disruption of the dendritic networks (Fig. 2C); the mean value of neurite-bearing cells (9.4%, Fig. 3) showed a significant decrease. While pretreatment with 60 μM VA-06 before delivery of CoCl2 dramatically alleviated the damage caused by CoCl2 to cell morphology (Fig. 2D) and showed significant difference in the number of neurite-bearing cells (47.5%, Fig. 3) from that of CoCl2 treatment alone.

Fig. 2
Protective effects of compound VA-06 against CoCl2-induced injury in differentiated PC12 cells (×200) The most representative fields are shown. A Undifferentiated PC12 cells. B Differentiated PC12 cells by NGF. C CoCl2-induced neurotoxicity of ...
Fig. 3
Protective effects of compound VA-06 (60 μM) against CoCl2-induced injury in differentiated PC12 cells The neurite-bearing ration was shown as mean ± SD of at least 3 independent experiments. *p ≤ 0.05 ...


In this study, we successfully synthesized 20 novel T-VA amide derivatives by combining T-VA with different amines. Their protective effects against CoCl2-induced neurotoxicity in differentiated PC12 cells were determined by the MTT assay. The result indicated that most of T-VA amide derivatives showed protective effects on injured differentiated PC12 cells. Among them, a large portion of the derivatives were more active (with lower EC50 values) than the positive control drug TMP, of which compound VA-06 displayed the highest neuroprotective effect with EC50 values of 17.39 ± 1.34 µM. Although none of the newly synthesized T-VA derivatives showed more effect than the positive control drug T-VA, the results enriched the study of ligustrazine derivatives with neuroprotective activity. Further bioassay of compound VA-06 on neuroprotective activity on animal models is underway.



Reagents were bought from commercial suppliers without any further purification. Melting points were measured at a rate of 5 °C/min using an X-5 micro melting point apparatus (Beijing, China) and were not corrected. Reactions were monitored by TLC using silica gel coated aluminum sheets (Qingdao Haiyang Chemical Co., Qingdao, China). NMR spectra were recorded on a BRUKER AVANCE 500 NMR spectrometer (Fällanden, Switzerland) with tetramethylsilane (TMS) as an internal standard; chemical shifts δ were given in ppm and coupling constants J in Hz. HR-MS were acquired using a Thermo Sientific TM LTQ Orbitrap XL hybrid FTMS instrument (Thermo Technologies, New York, NY, USA). Cellular morphologies were observed using an inverted fluorescence microscope (Olympus IX71, Tokyo, Japan).

Synthesis of (3,5,6-trimethylpyrazin-2-yl)methanol (1)

Compound 1 was prepared according to our previously reported method [21].

Synthesis of (3,5,6-trimethylpyrazin-2-yl)methyl 4-methylbenzenesulfonate (2)

To a solution of compound 1 (7.0 g, 46.3 mmol) and KOH (2.6 g, 46.3 mmol) in dry THF (100 ml), Tscl (8.82 g, 46.3 mmol) was added, then the mixture was stirred at 25 °C for 15 h. After completion of the reaction (as monitored by TLC), the reaction mixture was poured into water and the crude product was extracted with dichloromethane (3 × 100 ml), the combined organic layers were washed with brine (100 ml), anhydrous Na2SO4, filtered and the solvents were evaporated under vacuum. The crude products were purified by flash chromatography (Petroleum ether:Ethyl acetate = 4:1) to produce a white solid. The crude product, with 90% purity, was not purified further.

Synthesis of methyl 4-hydroxy-3-methoxybenzoate (3)

To a solution of vanillic acid (5.502 g, 32.7 mmol) in dry MeOH (100 ml), 3 ml SOCl2 was added gradually with stirring and cooling. Upon completion of the addition, the mixture was stirred at 25 °C for 15 h. After completion of the reaction (as monitored by TLC), the reaction mixture was evaporated under vacuum to produce a white solid. The crude product, with 95% purity, was not purified further.

Synthesis of methyl 3-methoxy-4-[(3,5,6-trimethylpyrazin-2-yl)methoxy] benzoate (VA-01)

Compound 2 (7.828 g, 256 mmol) and Compound 3 (3.580 g, 197 mmol) were dissolved in dry DMF, then K2CO3 (5.423 g, 393 mmol) was added and the mixture was kept at 70 °C for 15 h under nitrogen atmosphere. After completion of the reaction (as monitored by TLC), the reaction mixture was poured into ice-water and the crude product was extracted with dichloromethane. After drying the organic layer over anhydrous Na2SO4 and evaporating the solvent under vacuum, the crude products were purified by flash chromatography (Dichloromethane: methyl alcohol = 40:1) to produce a white solid.

methyl 3-methoxy-4-[(3,5,6-trimethylpyrazin-2-yl)methoxy] benzoate (VA-01)

White solid, yield: 52.5%, m.p.: 140.0–140.7 °C. 1H-NMR (CDCl3) (ppm): 2.51 (s, 3H, –CH3), 2.52 (s, 3H, –CH3), 2.62 (s, 3H, –CH3), 3.88 (s, 6H, 2× –OCH3), 5.26 (s, 2H, –CH2), 7.06 (d, J = 8.4 Hz, 1H, Ar–H), 7.53 (d, J = 1.2 Hz, 1H, Ar–H), 7.63 (dd, J = 1.2, 8.4 Hz, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.67 (–CH3), 21.51 (–CH3), 21.70 (–CH3), 52.16 (–OCH3), 56.12 (–OCH3), 70.81 (–CH2), 112.51, 112.82, 114.38, 123.41, 145.41, 148.91, 149.30, 150.12, 151.39, 151.99, 166.95 (–COO–). HRMS (ESI) m/z: 317.14905–3.4 ppm [M+H]+, calcd. for C17H20N2O4 316.14231.

Synthesis of 3-Methoxy-4-[(3,5,6-trimethylpyrazin-2-yl)methoxy]benzoic acid (VA-02)

An aqueous solution of LiOH (1.289 g, 307 mmol) was added to a solution of VA-01 (3.237 g, 102 mmol) in THF:MeOH:H2O = 3:1:1 (100 ml). The mixture was stirred at 37 °C for 2 h (checked by TLC). Upon completion of the reaction, pH was adjusted to 4–5 with 1 mol/l HCl. Then the reaction mixture was filtered and washed with water to give a white solid. The compound VA-02 has been reported by us previously [20].

General procedure for the preparation of ligustrazine-vanillic acid derivative VA-03VA-20

Compound VA-02 (0.662 mmol, 1.0 eq) and the corresponding amine (0.926 mmol, 1.4 eq) were dissolved in 25 ml dry CH2Cl2, then HoBt (1.0592 mmol, 1.6 eq), EDCI (1.0592 mmol, 1.6 eq), DIPEA (1.986 mmol, 3.0 eq) were added and the mixture was kept at 25 °C for 12 h. After completion of the reaction (as monitored by TLC), the reaction mixture was poured into water and the crude product was extracted with dichloromethane (3 × 25 ml), the combined organic layers were washed with brine (50 ml), anhydrous Na2SO4, filtered and the solvents were evaporated under vacuum. The crude products were purified by flash chromatography (Petroleum ether:acetone = 5:1).

N-ethyl-3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-03)

White solid, yield: 89.5%, m.p.: 194.5–195.8 °C. 1H-NMR (CDCl3) (ppm): 1.22 (t, 3H, –CH3), 2.49 (s, 3H, –CH3), 2.50 (s, 3H, –CH3), 2.60 (s, 3H, –CH3), 3.45 (m, 2H, –CH2), 3.86 (s, 3H, –OCH3), 5.22 (s, 2H, –CH2), 6.15 (s, 1H, –NH), 7.01 (d, J = 8.3 Hz, 1H, Ar–H), 7.21 (d, J = 8.3 Hz, 1H, Ar–H), 7.40 (s, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 15.06 (–CH3), 20.65 (–CH3), 21.48 (–CH3), 21.68 (–CH3), 35.03 (–CH2), 56.11 (–OCH3), 70.89 (–CH2), 111.12, 113.09, 118.99, 128.30, 145.49, 148.81, 149.73, 150.13, 150.55, 151.33, 167.04 (–CONH–). HRMS (ESI) m/z: 330.18045–3.9 ppm [M+H]+, calcd. for C18H23N3O3 329.17394.

(3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)phenyl)(piperidin-1-yl)methanone (VA-04)

White solid, yield: 65.2%, m.p.: 176.0–176.8 °C. 1H-NMR (CDCl3) (ppm): 1.66 (m, 6H, 3× –CH2), 2.50 (s, 3H, –CH3), 2.51 (s, 3H, –CH3), 2.61 (s, 3H, –CH3), 3.39 (brs, 2H, –CH2), 3.70 (m, 2H, –CH2), 3.84 (s, 3H, –OCH3) 5.21 (s, 2H, –CH2), 6.90 (d, J = 8.1 Hz, 1H, Ar–H), 6.96 (s, 1H, Ar–H), 7.01 (d, J = 8.1 Hz, 1H, Ar–H), 13C-NMR (CDCl3) (ppm): 20.70 (–CH3), 21.51 (–CH3), 21.73 (–CH3), 24.73, 31.11, 56.03 (–OCH3), 58.48, 71.00 (–CH2), 111.06, 113.45, 119.61, 129.68, 145.62, 148.75, 148.92, 149.65, 150.20, 151.30, 170.21 (–CON–). HRMS (ESI) m/z: 370.21179–3.4 ppm [M+H]+, calcd. for C21H27N3O3 369.20524.

3-methoxy-N-methyl-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-05)

White solid, yield: 87.0%, m.p.:173.5–174.5 °C. 1H-NMR (CDCl3) (ppm): 2.50 (s, 3H, –CH3), 2.51 (s, 3H, –CH3), 2.61 (s, 3H, –CH3), 2.98 (s, 3H, –CH3), 3.86 (s, 3H, –OCH3), 5.23 (s, 2H, –CH2), 6.20 (s, 1H, –NH), 7.02 (d, J = 8.0 Hz, 1H, Ar–H), 7.21 (d, J = 8.0 Hz, 1H, Ar–H), 7.40 (s, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.68 (–CH3), 21.49 (–CH3), 21.71 (–CH3), 26.97 (–CH3), 56.11 (–OCH3), 70.90 (–CH2), 111.08, 113.12, 119.06, 128.16, 145.48, 148.83, 149.73, 150.15, 150.60, 151.37, 167.87 (–CONH–). HRMS (ESI) m/z: 316.16489–3.9 ppm [M+H]+, calcd. for C17H21N3O3 315.15829.

N-(3-(dimethylamino)phenyl)-3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-06)

White solid, yield: 74.0%, m.p.: 171.4–172.3°C. 1H-NMR (CDCl3) (ppm): 2.51 (s, 6H, 2× –CH3), 2.62 (s, 3H, –CH3), 2.98 (s, 6H, 2× –CH3), 3.91 (s, 3H, –OCH3), 5.27 (s, 2H, –CH2), 6.53 (d, J = 7.8 Hz, 1H, Ar–H), 6.81 (d, J = 7.8 Hz, 1H, Ar–H), 7.09 (d, J = 8.4 Hz, 1H, Ar–H), 7.20 (m, 1H, Ar–H), 7.33 (dd, J = 1.9 Hz, 8.4 Hz, 1H, Ar–H), 7.51 (d, J = 1.9 Hz, 1H, Ar–H), 7.69 (s, 1H, –NH). 13C-NMR (CDCl3) (ppm): 20.70 (–CH3), 21.53 (–CH3), 21.74 (–CH3), 41.1 (–CH3), 56.10 (–OCH3), 70.74 (–CH2), 103.80, 109.96, 111.25,111.40, 119.51, 120.83, 128.70, 129.82, 137.45, 145.34, 148.91, 149.22, 150.14, 151.45, 151.94, 152.52, 166.97 (–CON–). HRMS (ESI) m/z: 421.22144–6.0 ppm [M+H]+, calcd. for C24H28N4O3 420.21614.

3-methoxy-N-(3-(2-methyl-1H-imidazol-1-yl)propyl)-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-07)

White solid, yield: 68.9%, m.p.: 160.0–160.8 °C. 1H-NMR (CDCl3) (ppm): 2.04 (m, 2H, –CH2), 2.35 (s, 3H, –CH3), 2.48 (s, 3H, –CH3), 2.49 (s, 3H, –CH3), 2.59 (s, 3H, –CH3), 3.45 (m, 2H, –CH2), 3.86 (s, 3H, –OCH3), 3.93 (m, 2H, –CH2), 5.21 (s, 2H, –CH2), 6.66 (m, 1H, –NH), 6.90 (s, 2H, 2× –CH), 7.02 (d, J = 8.4 Hz, 1H, Ar–H), 7.23 (d, J = 8.4 Hz, 1H, Ar–H), 7.40 (s, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 12.98 (–CH3), 20.78 (–CH3), 21.50 (–CH3), 21.83 (–CH3), 30.89 (–CH2), 37.46 (–CH2), 44.19 (–CH2), 56.16 (–OCH3), 70.91 (–CH2), 111.08, 113.01, 119.37, 119.44, 126.73, 127.48, 144.46, 145.24, 148.70, 149.71, 150.24, 150.88, 151.55, 167.45 (–CONH–). HRMS (ESI) m/z: 424.23187–7.1 ppm [M+H]+, calcd. for C23H29N5O3 423.22704.

N-(3-ethoxypropyl)-3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-08)

White solid, yield: 76.4%, m.p.: 119.0–119.9 °C. 1H-NMR (CDCl3) (ppm): 1.23 (m, 3H, –CH3), 1.88 (m, 2H, –CH2), 2.50 (s, 3H, –CH3), 2.51 (s, 3H, –CH3), 2.61 (s, 3H, –CH3), 3.50 (m, 2H, –CH2), 3.55 (m, 2H, –CH2), 3.61 (m, 2H, –CH2), 3.88 (s, 3H, –OCH3), 5.24 (s, 2H, –CH2–), 7.03 (d, J = 8.3 Hz, 1H, Ar–H), 7.07 (s, 1H, –NH), 7.20 (d, J = 8.3 Hz, 1H, Ar–H), 7.42 (s, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 15.52 (–CH3), 20.75 (–CH3), 21.51 (–CH3), 21.78 (–CH3), 28.88 (–CH2), 39.70, 56.11 (–OCH3), 58.58, 66.73, 70.83 (–CH2), 111.05, 112.97, 118.94, 128.32, 145.46, 148.75, 149.65, 150.24, 150.46, 151.41, 166.80 (–CONH–). HRMS (ESI) m/z: 388.22171–5.0 ppm [M+H]+, calcd. for C21H29N3O4 387.21581.

N-(2-hydroxyethyl)-3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-09)

Brick-red solid, yield: 86.7%, m.p.: 156.9–157.9 °C. 1H-NMR (CDCl3) (ppm): 2.50 (s, 3H, –CH3), 2.51 (s, 3H, –CH3), 2.61 (s, 3H, –CH3), 3.59 (m, 2H, –CH2), 3.81 (m, 2H, –CH2), 3.87 (s, 3H, –OCH3), 5.23 (s, 2H, –CH2), 6.63 (s, 1H, –NH), 7.03 (d, J = 8.4 Hz, 1H, Ar–H), 7.25 (dd, J = 2.0, 8.4 Hz, 1H, Ar–H), 7.40 (d, J = 2.0 Hz, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.65 (–CH3), 21.42 (–CH3), 21.69 (–CH3), 43.01 (–CH2), 56.08 (–OCH3), 62.27 (–CH2), 70.71 (–CH2), 111.07, 112.97, 119.50, 127.54, 145.25, 148.83, 149.61, 150.16, 150.80, 151.54, 168.15 (–CONH–). HRMS (ESI) m/z: 346.17517–4.4 ppm [M+H]+, calcd. for C18H23N3O4 345.16886.

N-(2-(dimethylamino)ethyl)-3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-10)

White solid, yield: 79.3%, m.p.: 148.6–149.0 °C. 1H-NMR (CDCl3) (ppm): 2.51 (s, 6H, 2× –CH3), 2.52 (s, 2H, –CH2), 2.54 (s, 6H, 2× –CH3), 2.62 (s, 3H, –CH3), 3.92 (s, 3H, –OCH3), 4.65 (d, 2H, –CH2), 5.26 (s, 2H, –CH2–), 7.09 (d, J = 8.4 Hz, 1H, Ar–H), 7.38 (dd, J = 2.0, 8.4 Hz, 1H, Ar–H), 7.51 (d, J = 2.0 Hz, 1H, Ar–H), 7.82 (brs, 1H, –NH). 13C-NMR (CDCl3) (ppm): 20.75 (–CH3), 21.48 (–CH3), 21.79 (–CH3), 27.41, 32.33, 51.08, 56.14 (–OCH3), 70.92 (–CH2), 111.35, 113.07, 118.72, 128.48, 145.34, 148.68, 149.82, 150.24, 150.64, 151.49, 167.32 (–CONH–). HRMS (ESI) m/z: 373.23010+16.4 ppm [M+H]+, calcd. for C20H28N4O3 372.21614.

(4-(4-chlorophenyl)piperazin-1-yl)(3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)phenyl)methanone (VA-11)

White solid, yield: 68.3%, m.p.: 179.0–179.5 °C. 1H-NMR (CDCl3) (ppm): 2.51 (s, 3H, –CH3), 2.53 (s, 3H, –CH3), 2.63 (s, 3H, –CH3), 3.16 (brs, 4H, 2× –CH2), 3.79 (brs, 4H, 2× –CH2), 3.86 (s, 3H, –OCH3), 5.24 (s, 2H, –CH2), 6.87 (d, J = 8.2 Hz, 2H, Ar–H), 6.96 (d, J = 8.2 Hz, 1H, Ar–H), 7.01 (s, 1H, Ar–H), 7.05 (d, J = 8.2 Hz, 1H, Ar–H), 7.23 (d, J = 8.2 Hz, 2H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.62 (–CH3), 21.51 (–CH3), 21.65 (–CH3), 29.83, 32.08, 37.07, 49.99 (–CH2), 56.15 (–OCH3), 71.04 (–CH2), 111.46, 113.53, 118.14, 120.08, 128.59, 129.30, 145.67, 148.90, 149.48, 149.90, 150.13, 151.29, 170.37 (–CON–). HRMS (ESI) m/z: 481.19775–6.0 ppm [M+H]+, calcd. for C26H29ClN4O3 480.19282.

tert-butyl4-(3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzoyl)piperazine-1-carboxylate (VA-12)

White solid, yield: 57.6%, m.p.: 86.6–87.6 °C. 1H-NMR (CDCl3) (ppm): 1.36 (brs, 2H, –CH2), 1.44 (s, 9H, 3× –CH3), 1.99 (brs, 2H, –CH2), 2.50 (s, 3H, –CH3), 2.52 (s, 3H, –CH3), 2.62 (s, 3H, –CH3), 3.02 (brs, 2H, –CH2), 3.70 (brs, 2H, –CH2), 3.84 (s, 3H, –OCH3), 4.47 (brs, 2H, –CH2), 5.22 (s, 2H, –CH2–), 6.90 (dd, J = 1.6 Hz, 8.2 Hz, 1H, Ar–H), 6.96 (d, J = 1.6 Hz, 1H, Ar–H), 7.02 (d, J = 8.2 Hz, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.64 (–CH3), 21.49 (–CH3), 21.66 (–CH3), 28.49 (–CH3), 33.01, 41.35, 48.08 (–CH), 56.09 (–OCH3), 71.03 (–CH2), 79.75 (–OCH), 111.22, 113.55, 119.77, 129.10, 145.66, 148.83, 149.26, 149.79, 150.14, 151.26, 155.16 (–COO–), 170.35 (–CON–). HRMS (ESI) m/z: 485.27286–7.3 ppm [M+H]+, calcd. for C26H36N4O5 484.26857.

N-(4-(cyanomethyl)phenyl)-3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-13)

White solid, yield: 65.7%, m.p.:199.0–199.5 °C. 1H-NMR (CDCl3) (ppm): 2.51 (s, 3H, –CH3), 2.52 (s, 3H, –CH3), 2.62 (s, 3H, –CH3), 3.74 (s, 2H, –CH2), 3.90 (s, 3H, –OCH3), 5.27 (s, 2H, –CH2), 7.09 (d, J = 8.2 Hz, 1H, Ar–H), 7.32 (d, 2H, Ar–H) 7.35 (dd, J = 1.8, 8.2 Hz, 1H, Ar–H), 7.48 (s, 1H, Ar–H), 7.65 (d, J = 8.2 Hz, 2H, Ar–H), 7.87 (brs, 1H, –NH). 13C-NMR (CDCl3) (ppm): 20.66 (–CH3), 21.47 (–CH3), 21.70 (–CH3), 23.24, 56.14 (–OCH3), 70.80 (–CH2), 111.24, 112.96, 118.09, 119.51, 120.83, 125.59, 127.96, 128.70, 138.15, 145.27, 148.92, 149.85, 150.11, 151.16, 151.51, 165.45 (–CON–). HRMS (ESI) m/z: 417.19052–5.2 ppm [M+H]+, calcd. for C24H24N4O3 416.18484.

3-methoxy-N-(4-phenoxyphenyl)-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-14)

White solid, yield: 57.8%, m.p.: 182.5–183.3 °C. 1H-NMR (CDCl3) (ppm): 2.52 (s, 3H, –CH3), 2.53 (s, 3H, –CH3), 2.64 (s, 3H, –CH3), 3.91 (s, 3H, –OCH3), 5.27 (s, 2H, –CH2), 7.01 (m, 4H, Ar–H), 7.09 (m, 2H, Ar–H), 7.33 (m, 3H, Ar–H), 7.49 (d, J = 2 Hz, 1H, Ar–H), 7.58 (m, 2H, Ar–H), 7.78 (brs, 1H, –NH). 13C-NMR (CDCl3) (ppm): 20.63 (–CH3), 21.50 (–CH3), 21.66 (–CH3), 56.16 (–OCH3), 70.85 (–CH2), 111.27, 113.07, 118.59, 120.04, 119.75, 122.04, 123.23, 128.25, 129.86, 133.66, 145.40, 148.96, 149.90, 150.09, 151.03, 151.42, 153.68, 157.62, 165.35 (–CON–). HRMS (ESI) m/z: 470.20447–7.5 ppm [M+H]+, calcd. for C28H27N3O4 469.20016.

3-methoxy-N-phenyl-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-15)

White solid, yield: 68.9%, m.p.: 189.7–190.2 °C. 1H-NMR (CDCl3) (ppm): 2.50 (s, 3H, –CH3), 2.51 (s, 3H, –CH3), 2.62 (s, 3H, –CH3), 3.89 (s, 3H, –OCH3), 5.26 (s, 2H, –CH2–), 7.08 (d, J = 8.3 Hz, 1H, Ar–H), 7.14 (m, 1H, Ar–H), 7.35 (m, 3H, Ar–H), 7.49 (d, J = 1.8 Hz, 1H, Ar–H), 7.62 (d, 2H, Ar–H), 7.81 (s, 1H, –NH–). 13C-NMR (CDCl3) (ppm): 20.65 (–CH3), 21.47 (–CH3), 21.69 (–CH3), 56.08 (–OCH3), 70.81 (–CH2), 111.25, 112.95, 119.39, 120.26, 124.46, 128.33, 129.12, 138.19, 145.29, 148.87, 149.81, 150.10, 150.99, 151.46, 165.42 (–CONH–). HRMS (ESI) m/z: 378.18002–4.6 ppm [M+H]+, calcd. for C22H23N3O3 377.17394.

3-methoxy-N-(naphthalen-2-yl)-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-16)

White solid, yield: 67.0%, m.p.: 174.1–175.0 °C.1H-NMR (CDCl3) (ppm): 2.53 (s, 6H, 2× –CH3), 2.65 (s, 3H, –CH3), 3.92 (s, 3H, –OCH3), 5.30 (s, 2H, –CH2), 7.14 (d, J = 8.2 Hz, 1H, Ar–H), 7.52 (m, 4H, Ar–H), 7.58 (s, 1H, Ar–H), 7.74 (d, J = 8.2 Hz, 1H, Ar–H), 7.90 (m, 2H, Ar–H), 7.99 (m, 1H, Ar–H), 8.17 (s, 1H, –NH–). 13C-NMR (CDCl3) (ppm): 20.66 (–CH3), 21.49 (–CH3), 21.66 (–CH3), 56.16 (–OCH3), 70.86 (–CH2), 111.49, 113.05, 119.44, 121.03, 121.47, 125.88, 126.15, 126.43, 127.73, 128.19, 128.87, 132.70, 134.25, 145.39, 148.93, 149.94, 150.11, 151.11, 151.43, 166.02 (–CONH–). HRMS (ESI) m/z: 428.19547–4.6 ppm [M+H]+, calcd. for C26H25N3O3 427.18959.

3-methoxy-N-(3-morpholinopropyl)-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-17)

White solid, yield: 65.2%, m.p.: 129.2–129.5 °C. 1H-NMR (CDCl3) (ppm): 1.79 (m, 2H, –CH2), 2.50 (m, 10H), 2.55 (m, 2H, –CH2), 2.61 (s, 3H, –CH3), 3.55 (m, 2H, –CH2), 3.70 (m, 4H, 2× –CH2), 3.89 (s, 3H, –OCH3), 5.25 (s, 2H, –CH2), 7.05 (d, J = 8.3 Hz, 1H, Ar–H), 7.24 (dd, J = 1.6, 8.3 Hz, 1H, Ar–H), 7.47 (d, J = 1.6 Hz, 1H, Ar–H), 7.75 (brs, 1H, –NH–). 13C-NMR (CDCl3) (ppm): 20.79 (–CH3), 21.47 (–CH3), 21.82 (–CH3), 24.40, 40.42 (–CH2), 53.86 (–CH2), 56.19 (–OCH3), 58.59, 66.90, 70.91 (–CH2), 111.42, 112.94, 118.95, 128.28, 145.34, 148.67, 149.77, 150.26, 150.59, 151.47, 167.06 (–CONH–). HRMS (ESI) m/z: 429.24731–6.6 ppm [M+H]+, calcd. for C23H32N4O4 428.24232.

3-methoxy-N-(thiophen-2-ylmethyl)-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-18)

White solid, yield: 62.7%, m.p.:156.3–156.9 °C. 1H-NMR (CDCl3) (ppm): 2.50 (s, 3H, –CH3), 2.52 (s, 3H, –CH3), 2.62 (s, 3H, –CH3), 3.89 (s, 3H, –OCH3), 4.80 (d, 2H, –CH2), 5.24 (s, 2H, –CH2), 6.36 (brs, 1H, –NH), 6.97 (m, 1H, –CH), 7.03 (m, 2H, 2× –CH), 7.22 (dd, J = 2.0, 8.3 Hz, 1H, Ar–H), 7.24 (d, 1H, Ar–H), 7.44 (d, J = 2.0 Hz, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.42 (–CH3), 21.47 (–CH3), 29.84 (–CH3), 38.97 (–CH2), 56.18 (–OCH3), 70.80 (–CH2), 111.28, 113.13, 119.22, 125.50, 126.36, 127.09, 127.66, 141.03, 144.09, 145.78, 149.19, 149.83, 150.80, 151.46, 166.73 (–CONH–). HRMS (ESI) m/z: 398.15253–3.3 ppm [M+H]+, calcd. for C21H23N3O3 S 397.14601.

3-methoxy-N-(4-methoxybenzyl)-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamide (VA-19)

White solid, yield: 75.1%, m.p.: 161.6–162.3 °C. 1H-NMR (CDCl3) (ppm): 2.48 (s, 3H, –CH3), 2.49 (s, 3H, –CH3), 2.59 (s, 3H, –CH3), 3.78 (s, 3H, –OCH3), 3.86 (s, 3H, –OCH3), 4.53 (d, 2H, –CH2), 5.22 (s, 2H, –CH2), 6.41 (s, 1H, –NH), 6.85 (s, 1 H, Ar–H), 6.86 (d, J = 8.0 Hz, 2 H, Ar–H), 7.00 (d, J = 8.3 Hz, 1 H, Ar–H), 7.19 (m, 1 H, Ar–H),, 7.25 (d, J = 8.0 Hz, 2 H, Ar–H), 7.43 (s, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.68 (–CH3), 21.50 (–CH3), 21.72 (–CH3), 43.72 (–CH2–), 55.2 (–OCH3), 56.10 (–OCH3), 70.81 (–CH2), 111.12, 112.92, 114.17, 119.11, 127.79, 129.42, 130.44, 145.38, 148.79, 149.68, 150.15, 150.67, 151.41, 159.13, 166.87 (–CONH–). HRMS (ESI) m/z: 422.21408–14.0 ppm [M+H]+, calcd. for C24H27N3O4 421.20016.

Methyl 3-(3-methoxy-4-((3,5,6-trimethylpyrazin-2-yl)methoxy)benzamido)propanoate (VA-20)

White solid, yield: 83.2%, m.p.: 139.6–140.1 °C. 1H-NMR (CDCl3) (ppm): 2.51 (s, 3H, –CH3), 2.52 (s, 3H, –CH3), 2.61 (s, 3H, –CH3), 2.64 (t, 2H, –CH2), 3.69 (m, 2H, –CH2), 3.70 (s, 3H, –OCH3), 3.88 (s, 3H, –OCH3), 5.24 (s, 2H, –CH2), 6.80 (s, 1H, –NH), 7.02 (d, J = 8.3 Hz, 1H, Ar–H), 7.20 (d, J = 8.3 Hz, 1H, Ar–H), 7.40 (s, 1H, Ar–H). 13C-NMR (CDCl3) (ppm): 20.59 (–CH3), 21.52 (–CH3), 21.63 (–CH3), 33.82 (–CH2), 35.36 (–CH2), 52.02 (–OCH3), 56.12 (–OCH3), 70.80 (–CH2), 111.06, 112.97, 119.15, 127.75, 145.56, 147.42, 149.67, 150.06, 150.66, 151.30, 166.97 (–CONH–), 173.61 (–COO–). HRMS (ESI) m/z: 388.18057–17 ppm [M+H]+, calcd. for C20H25N3O5 387.17942.

Bio-evaluation methods

Cell culture

PC12 cells were obtained from the Chinese Academy of Medical Sciences & Peking Union Medical College. The cultures of the PC12 cells were maintained as monolayer in RPMI 1640 supplemented with 10% (v/v) heat inactivated (Gibco) horse serum, 5% (v/v) fetal bovine serum and 1% (v/v) penicillin/streptomycin (Thermo Technologies, New York, NY,USA) and incubated at 37 °C in a humidified atmosphere with 5% CO2. T-VA amide derivatives were dissolved in dimethyl sulfoxide (DMSO).

Protective effect on damaged differentiated pc12 cells

The neuroprotective effect of newly synthesized T-VA amide derivatives was evaluated in vitro via the MTT method on the differentiated PC12 cells damaged by CoCl2 with ligustrazine as the positive control. PC12 cells growing in the logarithmic phase were incubated in the culture dishe and allowed to grow to the desired confluence. Then the cells were switched to fresh serum-free medium and incubated for 14 h. At the end of this incubation, the PC12 cells were collected and resuspended in 1640 medium supplemented with 10% (v/v) fetal bovine serum, then the cells were seeded in poly-l-lysine-coated 96-well culture plates at a density of 7 × 103 cells/well and incubated for another 48 h in the presence of 50 ng/ml NGF.

The differentiated PC12 cells were pretreated with serial dilutions of T-VA amide derivatives (60, 30, 15, 7.5, 3.75 µM) for 36 h, and then exposed to CoCl2 (final concentration, 250 mM) for another 12 h. Control differentiated cells were not treated with T-VA amide derivatives and CoCl2. At the end of this incubation, 20 μl of 5 mg/ml methylthiazol tetrazolium (MTT) was added to each well and incubation proceeded at 37 °C for another 4 h. After the supernatant medium was removed carefully, 200 μl dimethylsulphoxide (DMSO) were added to each well and absorbance was measured at 490 nm using a plate reader (BIORAD 550 spectrophotometer, Bio-rad Life Science Development Ltd., Beijing, China). The proliferation rates of damaged PC12 cells were calculated by the formula [OD490(Compd) − OD490(CoCl2)]/[OD490(NGF) − OD490(CoCl2)] × 100%; The concentration of the compounds which produces a 50% proliferation of surviving cells corresponds to the EC50. And it was calculated using the following equation: −pEC50 = log Cmax − log 2 × (∑P − 0.75 + 0.25Pmax + 0.25Pmin), where Cmax = maximum concentration, ∑P = sum of proliferation rates, Pmax = maximum value of proliferation rate and Pmin = minimum value of proliferation rate [2022].

Observation of morphologic changes

The changes in cell morphology after treatment with VA-06 were determined using light microscopy in this assay, it was performed as previously described [22]. Differentiation was scored as the cells with one or more growth cone tipped neurites greater than 2 cell bodies in length. The cell differentiation rate was calculated by the formula [the number of differentiated cells]/[the number of total cells] × 100%. Three fields were randomly chosen from different wells of three independent experiments. All data are expressed as mean ± standard deviation (SD). Statistical analyses were performed using SAS version 9.0 (SAS Institute Inc., Cary, NC, USA). Between-groups differences were assessed using Student t tests and p < 0.05 was considered significant.

Authors’ contributions

BX, PW and HL designed the study; BX, XX, CZ and GW carried out the chemistry and biology studies; MY, MJ, TX, XJ collected and analyzed data; BX and PW wrote the paper. All authors read and approved the final manuscript.


The authors acknowledge the financial support from National Natural Science Foundation of China (No. 81173519), Innovation Team Project Foundation of Beijing University of Chinese Medicine named ‘Lead Compounds Discovering and Developing Innovation Team Project Foundation’ (No. 2011-CXTD-15), Beijing Key Laboratory for Basic and Development Research on Chinese Medicine and young teachers’ scientific research project of Beijing University of Chinese Medicine (No. 2015-JYB-JSMS023).

Competing interests

The authors declare that they have no competing interests.


The synthesis work was supported by the National Natural Science Foundation of China (No. 81173519) and Beijing Key Laboratory for Basic and Development Research on Chinese Medicine; The neurotoxicity evaluation work was supported by the Innovation Team Project Foundation of Beijing University of Chinese Medicine named ‘Lead Compounds Discovering and Developing Innovation Team Project Foundation’ (No. 2011-CXTD-15), The page charge was supported by young teachers’ scientific research project of Beijing University of Chinese Medicine (No. 2015-JYB-JSMS023).

Contributor Information

Bing Xu, moc.621@gnibuxnehciew.

Xin Xu, moc.621.piv@nix.ux.

Chenze Zhang, moc.361@814029zcz.

Yuzhong Zhang, moc.621@201001zyz.

GaoRong Wu, moc.361@90uwgnoroag.

Mengmeng Yan, nc.ude.mcub@gnemgnemnay.

Menglu Jia, moc.361@33909210051.

Tianxin Xie, moc.361@3991xteix.

Xiaohui Jia, moc.361@56880511881.

Penglong Wang, Phone: +86-10-8473-8640, moc.621@185lpw.

Haimin Lei, Phone: +86-10-8473-8645, moc.621@iel_mh.


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