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J Exp Med. 2016 September 19; 213(10): 1961–1971.
PMCID: PMC5030798
Brief Definitive Report

Extracellular matrix protein Matrilin-4 regulates stress-induced HSC proliferation via CXCR4

Abstract

During homeostasis, hematopoietic stem cells (HSCs) are mostly kept in quiescence with only minor contribution to steady-state hematopoiesis. However, in stress situations such as infection, chemotherapy, or transplantation, HSCs are forced to proliferate and rapidly regenerate compromised hematopoietic cells. Little is known about the processes regulating this stress-induced proliferation and expansion of HSCs and progenitors. In this study, we identified the extracellular matrix (ECM) adaptor protein Matrilin-4 (Matn4) as an important negative regulator of the HSC stress response. Matn4 is highly expressed in long-term HSCs; however, it is not required for HSC maintenance under homeostasis. In contrast, Matn4 is strongly down-regulated in HSCs in response to proliferative stress, and Matn4 deficiency results in increased proliferation and expansion of HSCs and progenitors after myelosuppressive chemotherapy, inflammatory stress, and transplantation. This enhanced proliferation is mediated by a transient down-regulation of CXCR4 in Matn4−/− HSCs upon stress, allowing for a more efficient expansion of HSCs. Thus, we have uncovered a novel link between the ECM protein Matn4 and cytokine receptor CXCR4 involved in the regulation of HSC proliferation and expansion under acute stress.

INTRODUCTION

The life-long blood supply is maintained by a pool of self-renewing, multipotent hematopoietic stem cells (HSCs), which are found in a quiescent state for most of their life (Orkin and Zon, 2008). In acute stress situations such as infection, chemotherapy, and transplantation, proinflammatory cytokines such as IFN-α act as an emergency signal to recruit quiescent HSCs into an active cell cycle to replenish the compromised blood supply (Essers et al., 2009; Baldridge et al., 2010). However, the underlying molecular mechanisms for this are poorly understood.

HSC quiescence is tightly regulated by paracrine and autocrine signals and direct interactions within the BM niche (Scadden, 2014). Cell surface receptors such as c-Kit, N-cadherin, or integrins mediate direct adhesion of HSCs to niche cells or their surrounding extracellular matrix (ECM; Ellis and Tanentzapf, 2010). Additionally, cytokines produced by niche cells such as TGF-β, stem cell factor, and CXCL12 induce HSC quiescence and BM retention (Heissig et al., 2002; Katayama et al., 2006; Itkin and Lapidot, 2011). The CXCL12–CXCR4 axis for instance is central in regulating HSC migration and homing to the BM niche and, in contrast, promoting HSC quiescence by inducing the expression of cell cycle inhibitors (Sugiyama et al., 2006; Nie et al., 2008; Tzeng et al., 2011).

The BM ECM surrounding HSCs is composed of proteoglycans, collagens, and noncollagenous proteins and can affect adhesion, migration, and proliferation of HSCs (Klein, 1995; Ellis and Tanentzapf, 2010). Matrilins (Matns) comprise a family of oligomeric ECM adaptor proteins that connect these different ECM components, forming a supramolecular structure (Deák et al., 1999; Klatt et al., 2001). Matn1 and 3 are mainly expressed in skeletal tissue, whereas Matn2 and 4 show a broad expression pattern (Klatt et al., 2011). Matn1, 2, and 3 have been shown to directly interact with integrins and activate several intracellular signaling pathways; however, the molecular mechanism of this signaling remains unresolved (Mann et al., 2007).

Here, we show that Matn4 is highly expressed in quiescent HSCs, and expression decreases during proliferative stress, permitting the activation and expansion of HSCs. Intriguingly, HSCs lacking Matn4 respond more effectively to stress and show a robust competitive transplantation advantage, mediated by down-regulation of CXCR4 expression in Matn4-deficient HSCs in stress situations. In summary, our data suggest that high expression of Matn4 in HSCs confers a resistance to stress stimuli. In situations of acute stress such as infection or transplantation however, this protection is rapidly lost to allow HSCs to efficiently replenish the blood system.

RESULTS AND DISCUSSION

Matn4 is highly expressed in HSCs but dispensable for steady-state hematopoiesis

The ECM surrounding HSCs in the BM is poorly described. Gene expression analysis revealed that the ECM protein Matn4 is highly expressed in long-term HSCs (LT-HSCs) and severely down-regulated upon differentiation to short-term HSCs and multipotent progenitor cells (Fig. 1 A). Matn1, Matn2, and Matn3 were only low expressed in stem and progenitor cells with no enrichment in HSCs (Fig. 1 A). To examine the role of Matn4 in normal hematopoiesis, mice lacking Matn4 (Matn4−/−) were generated. Previous studies using single or double KO models of Matns revealed functional redundancy in this protein family (Aszódi et al., 1999; Mátés et al., 2004; Nicolae et al., 2007). Therefore, quadruple KO mice lacking all four family members (Matn1–4−/−) were established from single mutant lines. Matn4−/− and Matn1–4−/− mice were viable, fertile, had a normal life span, and showed no apparent gross abnormalities. Whereas both Matn4−/− and Matn-1–4−/− mice presented with decreased LinSca-1+cKit+ (LSK) numbers, their LT-HSC numbers were comparable with WT C57BL/6 mice (Fig. 1, B and C). Both KO models generated normal amounts of myeloid and lymphoid lineages with only minor differences in T cells and granulocytes (Fig. 1 D). Cell cycle analysis revealed comparable numbers of quiescent HSCs (Fig. 1, E and F). In addition, in Matn4−/−, mice the lack of Matn4 is not compensated by increased expression of the other Matns (Fig. 1 G). Thus, under homeostasis, Matn4 is not required for the maintenance of normal hematopoiesis and HSC quiescence.

Figure 1.
Matn4 is highly expressed in HSCs but dispensable for steady-state hematopoiesis. (A) Matn2, 3, and 4 mRNA expression in LT-HSCs (LinSca-1+c-Kit+CD150+CD48CD34), short term HSCs (ST-HSCs; LinSca-1+c-Kit+CD150+CD48 ...

Proliferative stress induces the down-regulation of Matn4 in HSCs

Matn4 expression is highest in the most quiescent HSCs and anticorrelates with increasing proliferative activity from HSCs to progenitors. To test whether Matn4 transcript levels were also down-regulated when HSCs are forced to proliferate, different stress conditions were tested. Interestingly, gene expression profiling revealed Matn4 as the most down-regulated gene in HSCs isolated from IFN-α–treated mice (Fig. 2 A), which could be confirmed on the protein level in HSCs isolated from mice treated with polyinosinic:polycytidylic acid (pI:C), inducing a strong IFN-α response (Fig. 2, B and C). In contrast, Matn4 down-regulation was abolished in HSCs isolated from Ifnar−/− and Stat1−/− mice, demonstrating that Matn4 expression levels in HSCs are controlled by Ifnar–Stat1 signaling (Fig. 2 D). In addition, treatment of mice with LPS, transplantation, irradiation, or in vitro culture of HSCs also led to a significant decline in Matn4 levels in HSCs (Fig. 2 E). Collectively, these data indicate that stress-induced proliferation of HSCs is accompanied by a strong down-regulation of Matn4 in HSCs.

Figure 2.
Proliferative stress is associated with Matn4 down-regulation in HSCs. (A) Scatterplot of changes in mRNA expression levels of HSCs (LKCD150+CD48) isolated from triplicate PBS- or IFN-α–treated WT mice (5 × 106 U/kg for ...

Loss of Matn4 leads to an increased HSC proliferation in response to stress

To test whether there is a functional link between the down-regulation of Matn4 and the activation of HSCs by IFN-α, HSC proliferation and blood recovery of WT and Matn1–4−/− mice were measured. pI:C treatment resulted in increased cell cycle entry of Matn1–4−/− HSCs compared with WT HSCs (Fig. 3 A), accompanied by a higher white blood cell (WBC) and platelet count during recovery (Fig. 3, B and C). To evaluate whether Matn1–4−/− showed improved recovery in other stress situations, mice were treated with the chemotherapeutic 5-fluorouracil (5-FU). As observed after pI:C treatment, Matn1–4−/− HSCs proliferated more in response to 5-FU (Fig. 3 D) and showed more rapid recovery of WBCs and platelets (Fig. 3, E and F). Similar phenotypes were observed in Matn4−/− mice (not depicted). Despite their enhanced proliferative response, Matn1–4−/− HSCs returned to quiescence at the same time as WT HSCs after pI:C and 5-FU treatment (Fig. 3, A–D). This was further supported by serial 5-FU treatments, where HSCs were repeatedly stressed just after recovery leading to their exhaustion and pancytopenia. There was no difference in the survival curves of WT and Matn1–4−/− mice upon serial 5-FU treatment, further supporting our hypothesis that Matn1–4−/− HSCs return to quiescence efficiently and to the same extent as WT HSCs, even after serial rounds of stress (Fig. 3 G).

Figure 3.
Loss of Matn4 leads to increased HSC proliferation and expansion in response to stress. (A–C) BrdU incorporation (14 h) of HSCs (LKCD150+CD48; A), WBC counts (B), and platelet (Plt) counts from WT and Matn1–4−/− ...

Matn4 limits the expansion of HSCs and progenitors

Strikingly, both LSK as well as LT-HSC numbers were dramatically increased on day 9 after 5-FU treatment (Fig. 3, H and I; and Fig. S1). To show that this massive expansion is not caused by contamination of the HSC gate, we performed a CFU assay with equal numbers of sorted Matn1–4−/− and WT LSKs. Remarkably, Matn1–4−/− LSKs showed a higher colony-forming potential than WT LSKs, suggesting an increase in functional HSCs and progenitors (Fig. 3 J). In agreement with this, untreated Matn1–4−/− LSK cells also showed higher CFUs than WT cells with larger and more colonies, which was even more pronounced in secondary CFUs (Fig. 3 K). The increased colony size could be rescued by the addition of recombinant Matn4 to the CFU medium (Fig. 3 L). Additionally, WT colony size was significantly reduced upon addition of recombinant Matn4, suggesting that Matn4 generally exerts growth inhibitory effects on HSCs. Collectively, these data show that in the absence of Matn4, HSCs proliferate and expand more efficiently in response to stress, resulting in more rapid reestablishment of homeostatic blood levels.

To further characterize this, single Matn4−/− HSCs were kept in liquid cultured for 7 d, and cell numbers and type of colonies were quantified. Matn4−/− HSCs produced larger colonies with a higher percentage of undifferentiated and mixed colonies (Fig. 3, M–P). Of note, a few days later, undifferentiated colonies started to generate mixed colonies (not depicted), suggesting that Matn4−/− HSCs initially self-renew more before differentiating into larger colonies. The increase in undifferentiated colonies could be rescued by adding recombinant Matn4 to the culture medium, supporting the hypothesis that Matn4 limits the expansion of HSCs (Fig. 3, O and P).

Matn4−/− HSCs show increased competitive repopulation capacity in BM transplantations

After transplantation into a lethally irradiated recipient, donor cells are confronted with an excess of inflammatory cytokines generated within the irradiated BM niche (Xun et al., 1994). To reestablish the hematopoietic system, a massive expansion of donor HSCs and progenitors is required. To examine whether loss of Matn4 could enhance this expansion of HSCs upon transplantation, competitive BM repopulation assays were performed by mixing equal amounts of Matn4−/− or Matn1–4−/− BM cells with WT CD45.1 competitor BM cells (50:50%; Fig. 4 A). Only 4 wk after transplantation, Matn4−/− and Matn1–4−/− cells comprised >80% of the blood granulocyte chimerism (Fig. 4 A). This competitive advantage was sustained over time, and Matn4−/− and Matn1–4−/− BM cells outcompeted WT CD45.1 cells across all differentiated lineages, up to HSCs (Fig. 4 B). In secondary competitive transplantations, Matn1–4−/− cells again rapidly showed improved reconstitution (>80%; Fig. 4 C). Limiting dilution assays confirmed that the improved reconstitution capacity was not because of an increased number of functional HSCs but rather a proliferative advantage of Matn4−/− cells (Fig. 4 D).

Figure 4.
Matn4-deficient HSCs show improved long-term repopulation capacity. (A) Blood granulocyte (Gr1+CD11b+) chimerism of WT CD45.1/Matn4−/− or WT CD45.1/Matn1–4−/− 50:50 chimeras, determined 0, 4, 10, and 16 wk after ...

Increased proliferative stress often leads to premature exhaustion of HSCs (Sato et al., 2009; Walter et al., 2015). Because KO HSCs proliferate more upon stress, we evaluated their long-term reconstitution capacity. Serial transplantation of 100% Matn4−/− or WT littermate BM showed a similar multilineage engraftment (Fig. 4 E) as well as the gradual decrease in reconstitution capacity (Fig. 4 F). Thus, the transient increase in proliferation upon stress observed in Matn-deficient HSCs does not lead to premature exhaustion.

Down-regulation of CXCR4 expression increases proliferation and expansion of Matn4−/− HSCs upon stress

To gain insight into the molecular mechanism through which deletion of Matn4 affects HSC function under stress, transcriptional profiling of WT (CD45.1/2) and Matn4−/− HSCs was performed 4 wk after competitive transplantation (Fig. 5 A). The overall expression profile of WT and Matn4−/− HSCs showed a high correlation. Among the few differentially expressed genes was CXCR4, whereas other known Matn target genes such as collagen X and BMP2 remained unchanged (Fig. 5, A and B). Furthermore, gene set enrichment analysis revealed transcripts involved in the MAPK signaling pathway and GTPase regulatory activity to be decreased in Matn4−/− HSCs (Fig. 5 C), pathways described downstream of CXCR4 (Busillo and Benovic, 2007). It is important to note that CXCR4 levels were equal under homeostasis and only reduced by 50% in transplanted Matn4−/− HSCs compared with WT HSCs (Fig. 5 D). The homing capacity of Matn-deficient HSCs was not impaired, indicating that the CXCR4 down-regulation occurred after HSCs homed to the BM (Fig. 5, E and F). Furthermore, no increased mobilization of HSCs could be detected in Matn1–4−/− mice in the baseline and upon stress (Fig. 5, G and H), suggesting that Matn1–4−/− HSCs are effectively retained within the BM. CXCR4 and its ligand CXCL12 are not only crucial players in HSC homing and migration, but also have been shown to induce HSC cell cycle arrest in homeostasis and upon 5-FU treatment (Sugiyama et al., 2006; Nie et al., 2008; McDermott et al., 2015). Indeed, inhibition of CXCR4 signaling in WT (CD45.1/2) mice by AMD3100 treatment (Broxmeyer et al., 2005) led to increased proliferation of WT HSCs in response to 5-FU and pI:C stress, mimicking the phenotype of Matn4−/− mice (Fig. 5 I). Furthermore, when WT CD45.1/2/Matn4−/− 50:50% chimeras were treated with AMD3100, leading to the reduction of CXCR4 signaling in WT CD45.1/2 HSCs, the proliferative advantage of Matn4−/− initially mediated by differences in CXCR4 expression was rescued (Fig. 5 J). Blood chimerism stayed at 50% 4 wk after transplant and remained significantly lower than in the untreated chimeras, even after discontinuation of the AMD3100 treatment (Fig. 5 J). To further confirm the role of CXCR4, Matn4−/− LSK cells overexpressing CXCR4 were competitively transplanted, and Matn4−/− chimerism remained at ~50% up to 12 wk after transplant (Fig. 5 K). When CXCR4 was overexpressed in both WT (CD45.1/2) and Matn4−/− cells, we again observed a growth advantage of the Matn4−/− HSCs, indicating that the difference in endogenous CXCR4 levels is still sufficient to provide a competitive advantage. However, we cannot exclude that additional factors are involved in generating a proliferative advantage in Matn-deficient HSCs. Overall, our data show that CXCR4 signaling is an important factor in limiting the proliferation of HSCs in response to different stress stimuli of HSCs in general and establishing the competitive growth advantage of HSCs lacking Matn4 (Fig. 5 L).

Figure 5.
Proliferative advantage of Matn-4−/− HSCs is mediated by down-regulation of CXCR4. (A) Scatterplot showing changes in mean mRNA expression levels (microarray) of three WT CD45.1/2 and three Matn4−/− HSCs (LSKCD150+CD48 ...

In summary, we have uncovered a novel link between ECM component Matn4 and CXCR4 signaling, regulating HSC proliferation and expansion in response to inflammatory stress, chemotherapy, and transplantation. Under homeostasis, high expression of Matn4 in HSCs confers a resistance to stress stimuli. In situations of acute stress, Matn4 is down-regulated to release this protection to allow HSCs to efficiently replenish the blood system. Interestingly, in vitro recombinant Matn4 can act as a cytokine with growth inhibitory effects. However, in mixed chimeras, Matn4 produced by WT BM cannot rescue Matn4−/− HSC expansion, suggesting that Matn4 acts locally on HSCs through an autocrine or even intracellular mechanism. Because reduced CXCR4 levels in Matn4−/− HSCs led to improved stress recovery and reconstitution upon transplantations, it will be of great interest to investigate whether the CXCR4 antagonist AMD3100 could be used to improve the recovery of patients from hematopoietic stress such as myelosuppressive chemotherapy and transplantation.

MATERIALS AND METHODS

Animals

Mice were maintained in individually ventilated cages in the DKFZ animal facility. Female 8–12-wk-old mice were used throughout the study. As controls, C57BL/6 (WT) or B6.SJL-Ptprca Pepcb/BoyJ (WT CD45.1) mice purchased from Envigo or Charles River, respectively, were used as indicated. Control WT CD45.1/2 mice were obtained by crossing WT CD45.2 and WT CD45.1 mice. To generate Matn4−/− mice, a neomycin-thymidine kinase–containing selection cassette floxed with loxP sites was introduced into the second intron and a single loxP site into the third intron of the mouse Matn4 gene. The targeting construct was electroporated into R1 embryonic stem (ES) cells and subjected to G418 selection. One homologous recombinant ES cell clone identified by Southern blotting was transiently transfected with Cre recombinase followed by selection against the thymidine kinase gene with Fialuridine. ES cells carrying the null allele, which lacks exon 1 with the translation initiation codon as well as the selection cassette and only contains one loxP site in the second intron, were used to establish the Matn4−/− line. Matn4−/− mice were backcrossed more than eight times on a C57BL/6 background. Quadruple KO mice deficient for all Matn family members (Matn1–4−/−) were generated by intercrossing individual Matn4-, Matn3 (Ko et al., 2004)-, Matn2 (Mátés et al., 2004)-, and Matn1 (Aszódi et al., 1999)-mutant lines and backcrossed to a >90% C57BL/6 background. Ifnar−/− (Müller et al., 1994) and Stat1−/− (Durbin et al., 1996) have been described previously. All animal protocols were approved by the Animal Care and Use Committees of the German Regierungspräsidium Karlsruhe für Tierschutz und Arzneimittelüberwachung.

In vivo treatments

Mice were injected i.p. with PBS; 5 mg/kg pI:C (InvivoGen), 5 × 106 U/kg recombinant mouse IFN-α (Miltenyi Biotec), 0.25 mg/kg LPS (Escherichia coli 0111:B4; Sigma-Aldrich), and 150 mg/kg 5-FU; or s.c. with 5 mg/kg AMD3100 (Sigma-Aldrich). Chimeras were treated with AMD3100 starting 2 d after transplant to allow homing and then treated three times per week.

Isolation of BM cells and peripheral blood (PB)

Mice were sacrificed, and tibiae, femurs, sternum, coxae, and vertebral columns were crushed in RPMI-1640 medium (Sigma-Aldrich) supplemented with 2% FCS. For cell sorting, lineage depletion was performed by incubating BM cells with rat monoclonal antibodies targeting CD4 (GK1.5), CD8a (53.6.7), CD11b (M1/70), B220 (RA3-6B2), Gr-1 (RB6.8C5), and Ter119 (Ter119). Subsequently, cells were washed, and lin+ cells were removed using magnetic beads (Dynabeads; Invitrogen). For analysis of PB, four to five drops of blood were collected from the vena facialis into an EDTA-coated tube. Blood cells were analyzed using a hematology system (Hemavet 950; Drew Scientific). For FACS analysis, erythrocytes were lysed with 1 ml ammonium-chloride-potassium lysing buffer.

Flow cytometry and cell sorting

BM cells were incubated with antibodies for 30 min on ice. BM cells were stained for HSCs and progenitors using antibodies CD4 (GK1.5), CD8 (53-6.7), CD11b (M1/70), Gr-1 (RB6-8C5), B220 (RA3-6B2), and TER119 (TER119); CD16/32 (93), CD41 (MW Reg 30), and CD105 (MJ7/18); and cKit (2B8), Sca-1 (D7), CD150 (TC15-12F12.1), CD48 (HM48-1), and CD34 (RAM34; eBioscience). When comparing untreated to pI:C/LPS-treated HSCs, Sca-1 was excluded from the gating because of its strong up-regulation. After 5-FU treatment, c-Kit was excluded from the HSC gating scheme, as its expression on HSCs is lost during 5-FU recovery. Cells were analyzed using an LSRII or LSR Fortessa flow cytometer (BD). Data were analyzed using FlowJo software (Tree Star). For FACS sorting, FACSAria I, II, and III cell sorters were used (BD).

Cell cycle analysis

BM cells were stained with surface markers as described under the Flow cytometry and cell sorting section, fixed using Cytox/Cytoperm buffer (BD), and stained with Ki67 antibody overnight at 4°C. Hoechst 33342 stain (Molecular Probes) was added at 25 µg/ml before FACS analysis. For the BrdU incorporation assay, mice were injected i.p. with 18 mg/kg BrdU (Sigma-Aldrich) 14 h before harvesting the BM. For BrdU staining, the BD BrdU Flow kit was used.

BM transplantations

3 × 106 cells were diluted in 100–200 µl PBS and i.v. injected into lethally irradiated (2 × 500 rad) mice. For mixed BM chimeras, 1.5 × 106 BM cells of each genotype were mixed before i.v. injection. For 2° chimeras, WT and KO BM of 1° 50:50 chimeras at week 16 were mixed 1:1 and transplanted into lethally irradiated recipients. Mice were kept on antibiotics (Cotrim) for 3 wk after transplant. Blood chimerism was monitored monthly.

Limiting dilution assay

3, 10, and 30 sorted WT CD45.1/2 or Matn4−/− LT-HSCs were transplanted i.v. together with 2 × 105 supportive BM cells into lethally irradiated WT CD45.1 recipients. PB was analyzed for myeloid and lymphoid reconstitution at 8 and 12 wk, and HSC engraftment in BM was analyzed at 14 wk. Mice for which engraftment was <1% were considered nonengrafted and were not taken into account for calculation of stem cell frequencies. Calculation of stem cell frequencies and statistics was performed using ELDA software.

Homing assays

3 × 106 BM cells were injected either i.v. or intrafemurally into lethally irradiated recipients, and blood chimerism was monitored monthly. Alternatively, 50 × 106 BM cells per mouse were transplanted i.v., femurs were harvested after 16 h, and the number of LSKs in the BM was analyzed by FACS.

Generation of CXCR4 retrovirus

A retroviral overexpression system for CXCR4 was generated using the SF91 retroviral vector (Milsom et al., 2009). Viral supernatants were generated from Phoenix cells (ATCC). Cells were transfected with either SF-CXCR4 or SF-Venus using calcium phosphate transfection (Invitrogen). Retroviral supernatant was harvested 48 h after transfection, concentrated by ultracentrifugation, and stored at −80°C until use.

In vitro culture

After FACS sorting, cells were cultured in Stem-Pro34 medium (Invitrogen) supplemented with 1% l-glutamine, 1% penicillin/streptomycin, 26% N-2 Supplement (Invitrogen), 50 ng/ml Flt3, 50 ng/ml mouse thrombopoietin, and 50 ng/ml mouse stem cell factor (R&D Systems). Cells were cultured at 37°C and 5% CO2.

Transduction of mouse LSK cells

LSK cells were cultured in Stem-pro34 medium for 48 h and transferred to nontissue culture–coated plates (BD) precoated with fibronectin CH296 fragment (Takara Bio Inc.) at 4 µg/cm2. LSK cells were seeded with concentrated retroviral supernatant at a multiplicity of infection of 4. 36 h later, cells were harvested, and live Venus+ cells were sorted.

Immunofluorescence

Sorted HSCs were added onto Polysine slides and incubated at room temperature for 15 min. Cells were fixed with Cytox/Cytoperm buffer (BD) for 10 min, blocked with 15% goat serum (Dako), and incubated with a rabbit polyclonal antibody against Matn4 (ab106379; Abcam) overnight at 4°C. Subsequently, slides were incubated for 1 h at 4°C with anti–rabbit IgG-F(AB)2-DyLight649 (Jackson ImmunoResearch Laboratories, Inc.) and mounted with ProLong Gold mounting medium containing DAPI (Invitrogen). Slides were analyzed on a cell observer (ZEISS) and documented with an AxioCam HR camera (ZEISS).

Colony forming assay

500 LSK cells were plated in 1 ml of Methocult 3434 (STEMCELL Technologies) supplemented with PBS or 100 ng/ml recombinant Matn4 (R&D Systems). Colonies consisting of >40 cells were counted using an inverted microscope after 7 d.

Microarray

4 wk after transplant, HSCs were sorted, and RNA was isolated using an RNA isolation kit (Arcturus PicoPure; Applied Biosystems). 2.5 ng RNA was used for hybridization onto the Mouse Sentrix-6 Bead-Chip array (Illumina). Microarray data were deposited in NCBI’s Gene Expression Omnibus under accession no. GSE72814.

Quantitative real-time PCR (qRT-PCR)

Cells were FACS sorted into 50–100 µl of extraction buffer (Arcturus PicoPure kit), and RNA was isolated with the PicoPure RNA isolation kit (Arcturus). RNA was reverse transcribed with the SuperScript VILO cDNA synthesis kit (Invitrogen). For qRT-PCR, the ViiA 7 Real-Time PCR system (Applied Biosystems) was used with 384-well plates. Sdha was used as the housekeeping gene for normalization. Relative gene expression was calculated by the comparative ΔΔ cycle threshold method. The primers used in the real-time PCR were: Matn4 forward, 5′-TTAGCACCATGACGCACCT-3′; reverse, 5′-GGACTCCGAAGCTCTGTCC-3′; CXCR4 forward, 5′-GACTGGCATAGTCGGCAATG-3′; reverse, 5′-AGAAGGGGAGTGTGATGACAAA-3′; SDHA forward, 5′-AAGTTGAGATTTGCCGATGG-3′; and reverse, 5′-TGGTTCTGCATCGACTTCTG-3′.

Statistical analysis

For statistical analysis and graphical representation of data, Prism 6.0 (GraphPad Software) was used. Statistical analysis was performed using two-tailed unpaired Student’s t tests. All data are expressed as mean ± SEM unless otherwise indicated. Statistical significance is indicated by *, P < 0.05; **, P < 0.01; and ***, P < 0.001.

Online supplemental material

Fig. S1 shows the gating scheme used to gate on LSK cells after 0, 5, 9, and 12 d of 5-FU treatment. Online supplemental material is available at http://www.jem.org/cgi/content/full/jem.20151713/DC1.

ACKNOWLEDGMENTS

The authors would like to thank Drs. D. Walter and A. Prendergast for critical reading of the manuscript. We thank the DKFZ Flow Cytometry Facility, the DKFZ Light Microscopy Core Facility, the microarray unit of the DKFZ Genomics and Proteomics Core Facility, and the DKFZ Animal Laboratory Services for their assistance and expertise. The authors would also like to thank Birgit Kobbe and Zsuzsanna Farkas for technical assistance in generation of the Matn4−/− mice.

This work was supported by the Dietmar Hopp Foundation and the Deutsche Forschungsgemeinschaft (SFB873 and FOR2033 NicHem).

The authors declare no competing financial interests.

Footnotes

Abbreviations used:

5-FU
5-fluorouracil
ECM
extracellular matrix
ES
embryonic stem
HSC
hematopoietic stem cell
LT-HSC
long-term HSC
PB
peripheral blood
pI:C
polyinosinic:polycytidylic acid
qRT-PCR
quantitative real-time PCR
WBC
white blood cell

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