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The effects of lipids on membrane proteins are likely to be complex and unique for each membrane protein. Here we studied different detergent/phosphatidylcholine reconstitution media and tested their effects on plasma membrane Ca2+ pump (PMCA). We found that Ca2+-ATPase activity shows a biphasic behavior with respect to the detergent/phosphatidylcholine ratio. Moreover, the maximal Ca2+-ATPase activity largely depends on the length and the unsaturation degree of the hydrocarbon chain. Using static light scattering and fluorescence correlation spectroscopy, we monitored the changes in hydrodynamic radius of detergent/phosphatidylcholine particles during the micelle-vesicle transition. We found that, when PMCA is reconstituted in mixed micelles, neutral phospholipids increase the enzyme turnover. The biophysical changes associated with the transition from mixed micelles to bicelles increase the time of residence of the phosphorylated intermediate (EP), decreasing the enzyme turnover. Molecular dynamics simulations analysis of the interactions between PMCA and the phospholipid bilayer in which it is embedded show that in the 1,2-dioleoyl-sn-glycero-3-phosphocholine bilayer, charged residues of the protein are trapped in the hydrophobic core. Conversely, in the 1,2-dimyristoyl-sn-glycero-3-phosphocholine bilayer, the overall hydrophobic-hydrophilic requirements of the protein surface are fulfilled the best, reducing the thermodynamic cost of exposing charged residues to the hydrophobic core. The apparent mismatch produced by a 1,2-dioleoyl-sn-glycero-3-phosphocholine thicker bilayer could be a structural foundation to explain its functional effect on PMCA.
The superfamily of P-type ATPases encompasses a large group of enzymes responsible for active transport of cations across the cell membrane. They use the hydrolysis of ATP as a source of energy and share in common the formation of an acid-stable phosphorylated intermediate aspartyl-phosphate in their reaction cycle. The plasma membrane calcium pump (PMCA)2 is a P-type ATPase that participates as an integral part of the Ca2+ signaling mechanism from eukaryotic cells (1) and is thus a crucial component of cell function. The enzyme exists in two main conformations, E1 and E2, according to the current kinetic model. Intracellular Ca2+ binds to high affinity sites in the E1 conformation, and this event leads to phosphorylation by ATP with formation of E1P. Subsequently, a conformational transition occurs (E2P), and the Ca2+ is released to the extracellular medium from low affinity sites, followed by hydrolysis of the phosphoenzyme to E2 and a new conformational transition to E1 (2).
P-type ATPases and other integral membrane proteins operate surrounded by a lipid bilayer. The composition of the lipid environment is typically complex and dynamic. Importantly, its characteristics should support at least a close optimal protein functioning. Integral membrane proteins and lipids interact in two different major ways: (i) interactions of lipid molecules at membrane protein-specific sites (3, 4) and (ii) interactions of phospholipids with the transmembrane surface of membrane proteins at nonspecific sites. The structure of these phospholipids could be important in determining the conformation of the protein and hence its activity (5). To conduct different experiments, membrane proteins can be purified and reconstituted in phospholipid - detergent mixed micelles. In this system, the hydrophobic regions of the protein are solvated with the nonpolar groups available in a dispersed lipid solution. Particularly, PMCA could be purified from detergent-solubilized erythrocyte plasma membranes and reconstituted in phospholipid-detergent mixed micelles. In these conditions, the purified enzyme preserves the biochemical properties of the PMCA in the erythrocyte membrane (6). This finding has validated the use of these micellar preparations for structural and functional studies (7).
It has been previously demonstrated that PMCA activity and also stability are influenced by phospholipids (8). Acidic phospholipids act as specific activators by increasing the apparent affinity for Ca2+ and also the maximal activity (Vmax) (9,–11). Importantly, neutral phospholipids, typically phosphatidylcholines, are essential for the enzyme basal activity. Recently, we employed a phospholipid analog, [125I]TID-PC/16, to assess different transmembrane conformations of PMCA from the study of lipid-protein interaction (12). Using the same experimental approach and kinetic measurements, we proposed a model for the PMCA cycle that included structural information about the transmembrane domain and its interaction with neutral phospholipids (13). Our results showed that the amount of PMCA annular lipids (i.e. the layer(s) of lipid surrounding the transmembrane domain of the protein) changes dynamically during the pump reaction cycle.
A great number of studies have thoroughly characterized the effect of the lipid environment on the activity of purified preparations of different P-ATPases. Nonetheless, only a few of them have addressed the importance of the phospholipid proportion over the ATPase activity when working within these micellar reconstitution systems. It has recently been reported that an increasing phosphatidylcholine molar ratio in mixed micelles exerts a positive modulatory effect over the PMCA Ca2+-ATPase activity, regardless of the total concentration of the individual amphiphiles (14). It can be hypothesized that the different reconstitution systems may exert their effects by favoring or impairing any of the PMCA reaction intermediates. However, a more detailed analysis of this effect on the whole spectrum of phospholipid/detergent molar ratio is yet to be performed. Moreover, it has been shown for other P-type ATPases that the hydrophobic thickness of the surrounding bilayer exerts an effect over the enzyme activity (5, 15, 16). Because the hydrophobic thickness of the lipid bilayer is expected to match the hydrophobic thicknesses of the proteins inserted in that membrane (17), the use of phospholipids with different chain lengths in the micelle may shed light on the elucidation of the optimal conditions for measuring PMCA activity.
In this work, we studied the effect of an increasing phospholipid molar ratio on PMCA Ca2+-ATPase activity. To this aim, we reconstituted PMCA in mixed micelles with different C12E10/PC ratio and different PC acyl chains. We employed static light scattering and fluorescence correlation spectroscopy (FCS) to characterize the micelle-vesicle transition of the different reconstitution systems. We also determined the levels of PMCA phosphorylated intermediates to functionally describe the effects exerted not only by the phospholipid molar ratio in the micelle but also by the different phospholipid chain lengths. Finally, molecular dynamics simulations were carried out in the presence of bilayers composed of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) or 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) to explore the effect of the thickness of the transmembrane domain on the Ca2+ pump activity.
All chemicals used in this work were of analytical grade and purchased mostly from Sigma-Aldrich. All of the phospholipids used in this work were purchased from Avanti Polar Lipids and stored as chloroform solution (when necessary). Phospholipids used in this study were 1,2-dilauroyl-sn-glycero-3-phosphocholine (DLPC), DMPC, 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), 1,2-dimyristoleoyl-sn-glycero-3-phosphocholine ((di14:1)PC), 1,2-dipalmitoleoyl-sn-glycero-3-phosphocholine ((di16:1)PC), DOPC, and 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-(lissaminerhodamine B sulfonyl) (Rho-DPPE). [γ-32P]Adenosine 5′-triphosphate was obtained from PerkinElmer Life Sciences. Recently drawn human blood for the isolation of PMCA was obtained from the Hematology Section of Fundosol Foundation (Argentina). Blood donation in Argentina is voluntary, and therefore the donor provides informed consent for the donation of blood and for its subsequent legitimate use by the transfusion service.
PMCA4 is the predominant isoform of human erythrocytes, which contain about 80% of this isoform and 20% PMCA1 (18). PMCA was isolated from CaM-depleted erythrocyte membranes by affinity chromatography in a calmodulin-agarose column as described previously (19) with some modifications. Purified PMCA was reconstituted in buffer containing 20% (m/v) glycerol, 0.005% C12E10, 120 mm KCl, 1 mm MgCl2, 10 mm MOPS-K (pH 7.4 at 4 °C), 2 mm EGTA, 2 mm dithiothreitol (DTT) and stored under liquid nitrogen until use. Protein concentration after purification was about 10 μg/ml. No phospholipids were added at any step along the purification procedure. The performed procedure ensures almost complete delipidation of PMCA. The kinetic properties and regulatory characteristics of the enzyme are preserved by this purification procedure (11, 19). Free calcium concentration was calculated by the Max Chelator program and controlled with an Orion electrode (OR-9720BNWP).
Phospholipid concentration was measured according to Chen et al. (20) with some modifications. Samples and standards containing 10–100 nmol of phosphorus were dried by heating at 100 °C. Mineralization was carried out by adding 0.1 ml of HNO3, 0.9 ml of HClO4 and incubating at 190 °C for 30 min. Inorganic phosphate was determined by the Fiske and Subbarow method (21).
Different amounts of phospholipids were solubilized with chloroform. The solvent was then evaporated under reduced pressure. The dried lipid film was solubilized by the addition of an adequate amount of C12E10 1% (i.e. 1 g of C12E10 in 100 ml of water) to achieve a phospholipid/detergent molar ratio (XPC) of 0.8, followed by vigorous mixing and sonication above the transition temperature of each phospholipid. Phospholipid concentration was determined as described above. Mixtures with different phospholipid/detergent molar ratios were prepared by mixing the adequate amounts of phospholipid/C12E10 and C12E10 stock solutions. All amphiphilic mixtures were prepared with milli-Q water. Before sealing each tube, we removed most of the oxygen atmosphere from the sample by blowing a stream of nitrogen gas over the solution. These mixtures were not conserved for more than 7 days at −20 °C.
ATPase activity was measured by following the release of inorganic phosphate from ATP as described previously by Fiske and Subbarrow (20) or by measuring the [32P]Pi released from [γ-32P]ATP as described by Richards et al. (22). In each condition, the quantity of Pi released in the absence of calcium was subtracted from the Pi released in its presence. The reaction medium consisted of 120 mm KCl, 30 mm MOPS-K (pH 7.2 at 37 °C), 3.75 mm MgCl2, 1 mm EGTA, and enough CaCl2 to give 100 μm final free [Ca2+]. The C12E10 concentration was 120 μm, and an adequate amount of the phospholipid stock solutions was added to achieve the desired molar ratio (which can be expressed as XPC). When necessary (as indicated in the experiment), A23187 ionophore was added to the previous reaction medium at the concentrations indicated in the figure. The reaction was started by the addition of ATP (final concentration of 2 mm for the non-radioactive assay and 30 μm for the radioactive ones). The experimental setup was adjusted to ensure that PMCA (7 nm) initial velocity conditions were met. Measurements were carried out at 37 °C (non-radioactive assay) or 25 °C (radioactive assay).
Micelle-vesicle transition was monitored at 37 °C in a 3 × 3 quartz cuvette by using a Jasco FP-6500 spectrofluorimeter equipped with a Jasco ETC-237T Peltier temperature controller. 90° light scattering was measured at 470 nm with a bandwidth of 3 nm for 120 s. Every sample was identical to the Ca2+-ATPase activity medium, excluding PMCA.
Before making FCS measurements, samples were incubated 60 min at room temperature in the presence of 10 nm Rho-DPPE. The concentration of the probe provides an average of 0.1 fluorescent molecules/micelle to ensure an adequate signal/noise ratio of the diffusing particles. All FCS experiments were carried out at 25 °C. Experiments were performed with a confocal Olympus FV-1000 microscope with a 1.35 numerical aperture ×60 oil immersion objective. Calibration was performed by using a 50 nm solution of the protein BSA labeled with the fluorescent probe fluorescein isothiocyanate (BSA-FITC) in 0.1 m guanidine hydrochloride to prevent dimerization (D = 63 μm2·s−1) (23). The samples were excited at 559 nm with a solid state laser at a nominal power of 8%. The detector was configured in pseudo-photon counting mode. The sampling frequency ranged from 10 to 50 kHz in order to ensure the best definition of the autocorrelation curves. Data acquisition took 120 s, and each sample was measured five times. Autocorrelation curves (24) were generated by using the equation,
where δF(t)·δF(t + τ) represents the fluctuation at time t, and τ represents a time lag. The obtained experimental autocorrelation function was fitted to a passive three-dimensional diffusion model,
where N represents the mean number of molecules in the observation volume, w0 and z0 represent radial and axial waist of the observation volume, and γ is a geometric correction factor for the effective volume with a value of 1/√8 for a Gaussian detection profile. Mean residence time of a particle in the observation volume is represented by τD. The diffusion coefficient D of a molecule can be calculated from τD.
Considering a spherical particle, the hydrodynamic radius can be calculated using the Stokes-Einstein equation.
The phosphorylated intermediates (EP) were measured as the amount of acid-stable 32P incorporated into the enzyme (0.9 μg/ml), according to the method described by Echarte et al. (25). The phosphorylation was measured at 25 °C in a medium containing 30 mm MOPS-K (pH 7.4 at 4 °C), 120 mm KCl, 3.75 mm MgCl2, 2 mm EGTA, 30 μm [γ-32P]ATP, 75 μm LaCl3 (where indicated), and enough CaCl2 to obtain a 100 μm final free calcium concentration. The C12E10 concentration was kept constant at 120 μm. The phospholipid concentration corresponded to the molar ratio of the activity assay. The reaction was started by the addition of [γ-32P]ATP under vigorous stirring, and after 30 s, it was stopped with an ice-cold solution of TCA (10% (w/v) final concentration). The tubes were centrifuged at 10,000 rpm for 5 min at 4 °C. The samples were then washed once with 7% TCA, 150 mm H3PO4 and once with double-distilled water and processed for SDS-PAGE. For this purpose, the pellets were dissolved in a medium containing 150 mm Tris-HCl (pH 6.5 at 14 °C), 5% SDS, 5% DTT, 10% glycerol, and bromphenol blue (sample buffer). Electrophoresis was performed at pH 6.5 (14 °C) in a 7.5% polyacrylamide gel. The reservoir buffer was 0.1 m sodium phosphate, pH 6.3, with 0.1% SDS. Migration of the sample components took place at 14 °C with 60 mA until the tracking dye reached a distance about 10 cm from the top of the gel. Gels were stained, dried, and exposed to a Storage Phospho-Screen (Amersham Biosciences). Unsaturated autoradiograms were scanned with the Storm Molecular Image System, and stained gels were scanned with an HP Scanjet G2410 scanner. Analysis of the images was performed with GelPro Analyzer. EP quantification was achieved as described by Echarte et al. (25).
The structure of PMCA covering residues 1–1056 was obtained by homology modeling against the structure of SERCA (Protein Data Bank code 1T5S) using MODELLER version 9.14 and the alignment published previously (26). Remaining C-end residues (positions 1057–1205) were not included in the model. The protein was placed in a triclinic box and embedded in a membrane composed of DMPC or DOPC molecules. Both membranes were previously equilibrated and originally consisted of 512 lipid molecules. Simulations were performed in GROMACS version 4.5.4 (27) using the G53a6 force field. To embed the protein, the InflateGRO2 package was used (28), and the final membranes were composed of 454 DMPC or 467 DOPC molecules. The systems were hydrated with simple point charge water molecules, and sodium and chlorine ions were added until a 0.15 m final concentration. After steepest descent minimization, both systems were subjected to simulations with the protein CA atoms position-restrained at 313 K and with 2-fs time steps. The first 2 ns were performed under NVT (where “N” is the constant particle number, “V” is volume, and “T” is temperature) conditions and then to a further 2 ns under NPT (where “P” is pressure) conditions. Then the systems were subjected to 5 ns of unconstrained molecular dynamics simulations at 1 bar with weak temperature coupling. All hydrogen atoms were considered explicitly, and protein covalent bonds were constrained using LINCS (29).
Data presented in this work are representative of three independent experiments. Activity measurements were performed in triplicate. Equations were fitted to the experimental data using a non-linear regression procedure based on the Gauss-Newton algorithm. Statistical analyses were performed using Excel software (Microsoft) and Sigma Plot for Windows, the latter being able to provide not only the best fitting values of the parameters but also their S.E. values. Statistical significance was determined by Student's t test.
In order to study the effect of mixed micelle composition on PMCA activity, the pump was reconstituted in systems with increasing PC/C12E10 ratios and different PC acyl chain length and degree of unsaturation. The C12E10 concentration was fixed at 120 μm, given that the change in C12E10 concentration might itself alter the activity.
Fig. 1A shows Ca2+-ATPase activity as a function of molar fraction (XPC) of DLPC, DMPC, and DPPC. Fig. 1B shows Ca2+-ATPase activity as a function of XPC using monounsaturated PCs: (di14:1)PC, (di16:1)PC, and DOPC. In every condition, PMCA activity showed a biphasic behavior. At first, ATPase activity increased with increasing XPC, reaching a maximal value, and decreased afterward. However, some important differences were observed among the different phospholipids assayed in the activation phase. Therefore, to obtain quantitative information on this phenomenon, we employed the mechanistic model proposed by Dodes Traian et al. (14).
The behavior observed in Fig. 1 for the PMCA Ca2+-ATPase activity as a function of XPC (until XPC = 0.3) was observed first in DPPC-C12E10 mixtures (14). In this work, the authors postulated a two-stage mechanistic model explaining the modulation of protein activity based on the exchange among non-structural amphiphiles at the hydrophobic transmembrane surface and a lipid-induced conformational change. Equation 5 describes the minimal model proposed by the authors,
where X0.5 represents the phospholipid molar fraction that gives half-activation effect, cx is the empirical cooperativity coefficient related to the maximal slope, and A0 and A1 are the lower and upper asymptotes of the equation, respectively. Dotted lines in Fig. 2, A and B, correspond to the global fitting of Equation 5 to the experimental data, between XPC of 0 and 0.3. The minimal model accurately described our data in the mentioned range for all of the phospholipids assayed. The best fitting parameter values are shown in Table 1. We obtained different maximal levels of Ca2+-ATPase activity (A1) for every PC/C12E10 reconstitution system. Interestingly, PMCA maximal activity was obtained for the enzyme reconstituted in DMPC/C12E10 mixed micelles. On the contrary, the lower activity was obtained in the presence of DOPC/C12E10 mixed micelles. If we focus on unsaturated phospholipids, the maximal PMCA activity was observed with (16:1) PC. These findings demonstrate that the maximal PMCA Ca2+-ATPase activity largely depends on the length and also on the unsaturation degree of each PC assayed. We also found that the XPC that gives a half-activation effect (X0.5) was similar for all lipids assayed except for DLPC, for which a higher proportion of lipid molecules in the mixed micelle was necessary to reach the coverage of the transmembrane hydrophobic surface of PMCA that leads to the maximal Ca2+-ATPase activity. On the other hand, the cx parameter takes its maximal value for DPPC and is minimal for DLPC and (di14:1)PC. This parameter gives a combined measure of both the affinity of a given phospholipid for the hydrophobic transmembrane surface of the protein and the cooperative effect of this phospholipid activating the enzyme (14). Thus, the high value of cx observed for DPPC indicates that this phospholipid is a more efficient activator of PMCA (i.e. small changes in its proportion in the micelles (or in the membrane) can produce a significant change in the enzyme activity). A similar mechanism could operate with other lipids and membrane proteins, constituting a key event in regulating the function of membrane protein in vivo.
Taken together, these findings validate the use of Equation 5 in different reconstitution systems and allowed us to obtain a set of parameters that could shed light on the mechanism underlying the activation process. Nevertheless, the mentioned model did not predict the behavior observed for PMCA Ca2+-ATPase activity in the whole range of XPC values assayed (Fig. 1).
The vesicle to micelle transition was extensively studied using different techniques, and it has been reported that it may occur in the detergent/phospholipid ratio assayed here (30,–33). These studies suggest that this process can be interpreted with a three-step molecular model and that it is a reversible process (i.e. detergent micelles can be enriched with phospholipids, producing the inverse transition) (34, 35). To determine whether the decrease in Ca2+-ATPase activity observed in Fig. 1 is due to a micelle-vesicle transition, we employed static light scattering and FCS on C12E10/DMPC and C12E10/DLPC mixtures. The latter was selected due to its differential behavior, in the decreasing phase, observed in Fig. 1. On the other hand, C12E10/DMPC mixtures were selected due to its representative behavior, with respect to the other amphiphilic systems assayed. Fig. 3A shows 90° light scattering (470 nm) for C12E10/DLPC and C12E10/DMPC mixtures at the same conditions in which the Ca2+-ATPase activity was determined in Fig. 1A but in the absence of the enzyme. In both systems, there was a rise in the scattering starting from XPC = 0.40, whereas the maximum value (at XPC = 0.70) was lower in the C12E10/DLPC mixture. The observed rise in light scattering could be produced by an increase in the total amount of particles in the system. To discard this possibility, we included a set of conditions in which the final concentrations of amphiphiles were the same as the ones needed for every molar ratio used in Fig. 3A but in the absence of phospholipids (Fig. 3A, inset). No significant differences in scattering were observed between any of these conditions, showing that the increase in light scattering is produced by intrinsic differences in particle size and/or shape associated with XPC. These results demonstrate that the micelle-vesicle transition appears to occur at about XPC = 0.40 in both mixtures. However, the size and/or shape of the particles observed at XPC = 0.7 is different for C12E10/DLPC and C12E10/DMPC mixtures.
In order to further characterize the observed differences in particle size and also to link this phenomenon with the decreasing phase of Ca2+-ATPase activity observed at higher XPC, we employed fluorescence correlation spectroscopy (24) in C12E10/DLPC and C12E10/DMPC mixtures. FCS is based on fluorescence intensity fluctuations that take place in a very small observation volume, typically a few fl. The analysis of these fluctuations allowed us to determine the diffusion coefficient (D) of the hydrodynamic particle from which the hydrodynamic radius (RH) can be obtained from Equation 4. In our experimental approach, the fluorescent phospholipid analog (Rho-DPPE) was incorporated into the amphiphilic system in order to obtain the diffusion coefficient of the micelles/vesicles. The inset from Fig. 3B shows a typical experimental autocorrelation curve obtained from these systems and the corresponding fit to a three-dimensional diffusion model.
Fig. 3B shows that the particle's RH started to increase from about XDMPC = 0.3 and XDLPC = 0.6. These results show that although there is a transition taking place in the XPC ranges assayed, the rise in size appears to start at higher XPC in C12E10/DLPC mixtures. Moreover, we also found a different size at XPC = 0.70 for both of the mixtures. These results are consistent with the stable Ca2+-ATPase activity observed at XDLPC = 0.70. As we have previously demonstrated, before the transition, the mechanistic model (Equation 5) predicts the behavior of Ca2+-ATPase activity as a function of XPC. In these conditions, the average size of the particles is nearly constant (Fig. 3B). Next, as the particle size increases, the Ca2+-ATPase activity decreases.
To explain the decrease in Ca2+-ATPase activity during the micelle-vesicle transition, we proposed the following hypotheses: (i) the enzyme is inserted in a vesicle in a way that may pump calcium toward the lumen of the vesicle, leading to the cation accumulation that would finally inhibit transport and ATPase activity; (ii) the enzyme is inserted in a vesicle with its catalytic site hidden from the substrates; (iii) the enzyme is less stable and tends to be inactivated; or (iv) the PMCA catalytic cycle is affected by the biophysical changes in the amphiphilic environment.
To address the first possibility, we measured the Ca2+-ATPase activity of PMCA reconstituted in C12E10/DMPC mixtures in the presence of the calcium ionophore A23187. It is known that A23187 forms complexes with divalent cations and that it presents a particular high affinity for Ca2+ (36). These complexes go across the biological membranes, allowing the cation release (37). As a consequence, if the inhibition in the Ca2+-ATPase activity is due to the vesicle filling with calcium, the addition of A23187 would reverse this effect (38).
We assayed two representative XDMPC (0.25 and 0.70, pre- and post-transition, respectively). Fig. 4 shows the Ca2+-ATPase activity of PMCA reconstituted in XDMPC = 0.25 or 0.70 in the presence of different A23187 concentrations. The incorporation of A23187 did not prevent the decrease in Ca2+-ATPase activity observed at XDMPC = 0.70. There is a subtle A23187 concentration-dependent inhibitory effect observed at XDMPC = 0.25 that can be attributed to a nonspecific effect on the enzyme (39). This result indicates that the decrease in Ca2+-ATPase activity, observed after the micelle-vesicle transition, would not be due to the formation of closed vesicles that impair Ca2+ uptake.
PMCA forms an acid-stable phosphorylated intermediate (EP) during its reaction cycle. Lanthanum (LaIII) is known to prevent the Mg2+-dependent transition E1P → E2P (40, 41). Thus, the amount of EP obtained in the presence of LaIII is usually considered as a valid calculation of the total active enzyme concentration (42). Therefore, to assess whether the lower Ca2+-ATPase activity found for reconstitution of PMCA at higher XPC (Fig. 1) could be explained by a decrease in the concentration of active enzyme, we measured the total phosphoenzyme concentration from [γ-32P]ATP in the presence of 50 μm LaIII. PMCA was reconstituted in C12E10/DMPC and C12E10/DLPC mixtures at optimal (0.25 and 0.4, respectively) and higher molar ratios (0.70). Fig. 5 shows that there were not significant differences among the levels of EP in any of the conditions assayed. Consequently, the inhibition in Ca2+-ATPase activity seen when PMCA was reconstituted in systems at higher molar ratios was not due to a decrease in the levels of active enzyme. Furthermore, this result also rules out the possibility that impairment in substrate or cofactor accessibility could lead to the decrease in PMCA activity.
Once we have determined that the active enzyme concentration was the same for all of the conditions previously assayed (Fig. 5), we calculated the turnover (kp) of PMCA when the enzyme was reconstituted in C12E10/DMPC and C12E10/DLPC mixtures at optimal and higher molar ratios. Table 2 shows the kp values calculated as the ratio between the Ca2+-ATPase activity from Fig. 1 and the amounts of active PMCA (Ep values obtained in Fig. 5). There is a decrease in kp at XDMPC = 0.70. This result suggests that the decrease in Ca2+-ATPase activity observed in Fig. 1 for most of the phospholipids assayed was due to an increase in transit time.
As the mixture that leads to the lower Ca2+-ATPase activity at optimal XPC (Fig. 2), we calculated the enzyme kp when PMCA was reconstituted in C12E10/DOPC micelles at optimal XDOPC = 0.3. Similarly, when reconstituted at XDOPC = 0.3, the enzyme kp is lower than the one attained in XDMPC = 0.25. Not surprisingly, the differences in the maximal activities obtained at the optimal XPC for all of the phospholipids assayed (Table 1) may also be due to differences in the enzyme kp.
It has been previously reported for SERCA that reconstitution into bilayers of phospholipids with different fatty acyl chains leads to different kinetics for ATPase activity due to effects on phosphorylation and dephosphorylation rates (43). Thus, to assess whether the differences in Ca2+-ATPase activities obtained for the different phospholipids at optimal XPC and the decrease in kp found for reconstitution at higher XPC (Table 2) could be partially explained by alterations on the phosphorylated intermediates, we measured the levels of EP at steady state and at optimal and higher XPC (Fig. 6A). DMPC and DOPC mixed micelles were chosen as models for this experiment because they showed maximal differences in Ca2+-ATPase activity. For both phospholipids, there is an increase in the level of EP at higher XPC. If we compare the EP levels attained at optimal XPC, we observed that there is a decrease in this level in the presence of DOPC micelles.
Although the measurement of EP itself is relevant for the characterization of partial reactions of the enzyme cycle, we also decided to determine the time of residence in the phosphorylated intermediates in the previously assayed conditions. A residence time was defined as the actual time spent as a given intermediate during an isolated turnover (44). First, because the determination of the EP levels needed to be carried out in the presence of ATP 30 μm, we measured the Ca2+-ATPase activity at the same experimental conditions (Fig. 6B). The PMCA specific activity was calculated from the slope of each curve (Table 3). There is a decrease in Ca2+-ATPase activity in the presence of higher XPC, and this drop is similar, for the two phospholipids assayed, to the observed behavior at 2 mm ATP (Fig. 1). Also, the Ca2+-ATPase activity at optimal XDOPC is about 40% lower than at optimal XDMPC, also similar to the values obtained in Fig. 1. These results indicate that the effects on the Ca2+-ATPase activity produced by the different reconstitution systems are independent from the ATP concentrations assayed.
Table 3 shows the residence times calculated as the ratio between EP levels and the Ca2+-ATPase activities. Results show that at higher XDMPC and XDOPC, the residence time of EP (t(EP)) increases (Table 3). The observed effects on t(EP) in the conditions mentioned above are in part due to an increase in EP levels (with respect to the levels observed at optimal XPC). This can be due to an increase in the rate of formation of EP (higher rate of phosphorylation) or alternatively to a decrease in its breakdown (slower rate of dephosphorylation). Because the rate of the full cycle of the pump decreased in these systems, it is likely that the higher molar ratio effect on the EP is due to a slower rate of dephosphorylation. Conversely, there is not a significant difference in t(EP) between the two different phospholipids tested at the optimal XPC. This finding suggests that the slower kinetics (decrease in kp) observed in the presence of DOPC (Table 2) at optimal XPC may not be due to an effect on the phosphorylated intermediates but to any other step of the reaction cycle.
Molecular dynamics simulation of PMCA embedded in DMPC and DOPC bilayers. In order to analyze the structural changes that may take place when PMCA is exposed to different amphiphilic environments, we performed molecular dynamics (MD) simulations of PMCA inserted in DMPC or DOPC pure lipid bilayers. Because PMCA has not yet been crystallized, we used a recently described PMCA model that was based on a SERCA template (Protein Data Bank code 1T5S). Fig. 7 displays the average protein structure together with a brown surface representing the average positions of phosphorus atoms in the bilayer leaflets, calculated from MD simulation of PMCA in a bilayer of DMPC (A) or DOPC (B).
From our simulations, the estimated hydrophobic thicknesses of these bilayers are 24 and 29 Å, respectively. Along the simulations, the systems evolve to accommodate the upper layers of DMPC and DOPC to interact with the positive charges of Lys and Arg residues (in cyan and blue sticks). However, the lower layer of the DOPC bilayer leaves several positively charged groups within the hydrophobic core, namely Arg-80, Lys-365, Lys-828, Lys-897, and Lys-974. However, in the presence of DMPC membranes, these residues are located in a more polar environment interacting with phosphorus atoms or exposed to the solvent.
Fig. 7B shows the density graph of the polar heads and hydrophobic tails. For the densities of acyl chains of the DMPC and DOPC bilayer, no significant differences were observed. However, a decrease in the density of the headgroups only in the extracellular side of the DOPC membrane is revealed associated with the disruption of the membrane necessary to optimize the protein-membrane interactions, which is not observed with DMPC. Thus, the polar heads of the DMPC bilayer appear correctly packed, whereas in the case of the DOPC bilayer this may not be the case.
In this study, we demonstrated that neutral phospholipids modulate PMCA Ca2+-ATPase activity. This modulation is highly dependent on the composition of the mixed micelles (XPC) and also on the PC characteristics. The existence of a micelle-vesicle transition in the reconstitution systems led to a decrease in the turnover rate of PMCA by a direct effect on the residence time of the phosphorylated intermediates, suggesting a slower dephosphorylation rate. Otherwise, the marked differences in PMCA kp attained in DMPC or DOPC mixed micelles were not due to an effect on the phosphorylated intermediates. We propose here that the location of several positively charged groups within the hydrophobic core, when PMCA was embedded in a DOPC bilayer, may explain the lower turnover rate. We found that the optimum hydrophobic thickness for PMCA is 24 Å, consistent with the maximal Ca2+-ATPase activity.
It has been reported that C12E10 forms spherical micelles in aqueous solutions (45). When bilayer-forming long-chain lipids are mixed with these detergent molecules, the two components mix to form mixed micelles with a similar size (Fig. 3). However, when these micelles are enriched in lipids, a transition to vesicle may occur, which increases the possibility of aggregates formation (Fig. 3). These aggregates, described as binary, bilayered mixed micelles, are known as bicelles (46). These structures are characterized by the presence of a central portion forming an actual lipid bilayer, surrounded or interspersed with “rims” of detergent molecules (47). This change in organization between lipid and detergent molecules is accompanied by changes in the curvature and an increase in the lateral pressure in the center of the bilayers (48). Such effects may affect folding and conformation of integral membrane proteins (49,–51). Accordingly, we show here that in the case of PMCA, Ca2+-ATPase activity decreases to 40% of the maximum level at XDMPC = 0.7. In contrast, when mixed micelles are formed with DLPC, Ca2+-ATPase activity decreases at a higher XPC. This might be related with the fact that a higher amount of this phospholipid was necessary to modify the C12E10/DLPC particle size (Fig. 3B). This phenomenon could be explained by a higher degree of mixing between DLPC and micelles forming species than between these species and DMPC (52).
It has been demonstrated that, after a micelle-vesicle transition, there might be a coexistence of bicelles with vesicles (53, 54). In our system, PMCA may be inserted in a vesicle with its catalytic site facing either the luminal side or the solution. In both cases, the Ca2+-ATPase activity would be impaired by a lack of substrate accessibility or by Ca2+ accumulation in the vesicle. Of note, we show here that the decrease of the Ca2+-ATPase activity observed at higher XPC is not due to the vesicle filling with calcium (Fig. 4) or a lack of accessibility to substrates and/or cofactors (Figs. 4 and and5).5). Although this result does not fully discard the possibility of a change in the PMCA apparent affinity by Ca2+ whenever XPC increases, preliminary studies of our group suggest that PMCA apparent affinity for Ca2+ is not modified by reconstitution in XDMPC = 0.25 or XDMPC = 0.7. On the same subject, PMCA inhibition by higher XPC was similar in the presence of 30 μm or 2 mm ATP (Figs. 6 and and1,1, respectively), suggesting that the pump affinity for ATP is not modified by an increase in XPC.
Kosk-Kosicka et al. (6) have previously described that the addition of neutral phospholipids to a phospholipid-depleted PMCA preparation produces no effect on the steady-state EP level. In contrast, the present work shows that PMCA reconstitution at higher XPC increases the EP level concomitantly with a decrease in PMCA turnover (Fig. 6 and Table 2). When a reaction cycle of an enzyme is closed, as in the case of P-ATPases, the sum of the residence times of all intermediaries is equal to the transit time of the enzyme (44). Therefore, if we consider that the transit time increases from 17 ± 1 ms at XDMPC = 0.25 to 29 ± 3 ms at XDMPC = 0.7, the residence time of one or more intermediates must be changing in about 12 ± 4 ms. Notably, our results show that the time of residence in EP (t(EP)) increases about 7.4 ± 1.0 ms (from 4.5 ± 0.2 to 11.9 ± 0.8; Table 3) when XDMPC changes from 0.25 to 0.7. These results strongly suggest that the lower PMCA turnover observed at higher XPC is related to an increase of t(EP). As we described under “Results,” the only possibility that the EP level in steady state (and consequently t(EP)) can increase along with a decrease of enzyme turnover is if the dephosphorylation rate decreases. Therefore, we suggest that an increase of XPC in PMCA reconstitution medium produces a lower enzyme turnover through a decrease in the rate of dephosphorylation.
It has been described that in addition to being the substrate in the phosphorylation of the E1Ca state, ATP also functions in a non-phosphorylating mode by enhancing the rates of the steps involved in phosphoenzyme turnover (E1CaP → E2P and E2P → E2) as well as the E2 → E1Ca transition of the dephosphoenzyme (55). Taking into account that PMCA apparent affinities for ATP in the catalytic and modulatory sites are 25 and 250 μm, respectively (42), results from Fig. 6 suggest that the increase of t(EP) could not be due to the absence of the modulatory effect of ATP.
Recently, we have used a phospholipid analog ([125I]TID-PC/16) to study the transmembrane domain conformation in SERCA (12), Na/K ATPase (56), and different isoforms of the PMCA (57). Transmembrane domain conformations of these ATPases change during the catalytic cycle, and the amount of annular lipids also varies (i.e. the conformational changes that allow the ion transport by these P-ATPases involve changes in the arrangement of lipids surrounding the protein). Regarding E2 and E1Ca conformations, we have determined that the number of DMPC molecules directly associated with PMCA transmembrane domain was 19 and 30, respectively (57). Apart from that, Dodes Traian et al. (14) combined kinetic and structural information to propose a model in which the enzyme selects a particular lipid microenvironment, and then this lipids produces a conformational change at the transmembrane region, which is further propagated toward the catalytic domain. In this model (Equation 5), the X0.5 parameter is related to the degree of lipid coverage of the transmembrane surface, producing half-maximal activation. Accordingly, we would be able to estimate the amount of PC molecules that leads to PMCA maximal activation. If we consider that the C12E10 aggregation number does not change at least until XDMPC = 0.25, we may propose that the maximal PMCA activation is observed when there exist about 25 molecules of DMPC in the mixed micelle. Note that this consideration may only be valid if the particle size does not vary (as can be seen in Fig. 3 for the mentioned XPC range). In addition, this value turned to be similar for most of the neutral phospholipids assayed (except for DLPC). Remarkably, this number of phospholipid molecules is similar to the amount of DMPC molecules directly associated with the PMCA transmembrane domain (57). Nonetheless, this finding does not necessarily indicate that these 25 molecules of DMPC may be directly associated with the protein.
The activating effect of different phospholipids was also investigated in other P-type ATPases. SERCA displays maximum activity when embedded in bilayers with a thickness around 30 Å (58). The chain length dependence of the activity of the Na+/K+-ATPase is slightly different from that of SERCA, with an optimum chain length of C22 in the absence of cholesterol and C18 in its presence (16). Here we show that Ca2+-ATPase activity is maximal in the presence of a DMPC bilayer (i.e. a hydrophobic thickness of about 24 Å). In agreement with our results for PMCA, the reconstitution of SERCA (43) and Na+/K+-ATPase (16) in bilayers whose thickness differs from the optimal results in a decrease in the turnover of the enzyme(s). In SERCA, this was attributed to an increase of the EP level in steady state produced by a decrease of the dephosphorylation rate (43). On the contrary, our results show that DOPC produces a decrease in EP level with respect to DMPC without changes in the residence time in EP. This result was similar for higher XPC, suggesting that the increase of t(EP) is related to the physical state of the micelles or bicelles and not to changes in the bilayer thickness. In agreement with these findings, Sonntag et al. (15) suggested that a change in the bilayers hydrophobic thickness in SERCA may have a direct effect on the conformational change between the E1 and E2 states.
MD simulations revealed that the upper layers of DMPC and DOPC adapt to interact with the positive charges of the large number of Lys residues that are located near the interface (Fig. 7A). However, the lower layer of the DOPC bilayer leaves several positively charged groups within the hydrophobic core, whereas in the presence of DMPC membranes, these residues are placed in a more polar environment, interacting with phosphorus atoms or exposed to the solvent. It is notable that these simulations were carried out in the absence of detergent, contrasting with the reconstitution systems used in our experiments. Although the detergent molecules would probably increase the membrane fluidity, it has been demonstrated that the thickness of a bilayer composed of C12E8 and DOPC (in a ratio of 30:80 (i.e. an XPC of about 0.3)) remained nearly constant with respect to a pure phospholipid (15). Importantly, the protein structure was only slightly affected by the detergent environment, consistent with its functional integrity. Taking this evidence into account, we propose that the lower Ca2+-ATPase activity found in XDOPC = 0.3 could be a direct consequence of the apparent hydrophobic mismatch produced by a thicker bilayer. This effect was also observed at higher XPC, where Ca2+-ATPase activity is lower in DOPC with respect to DMPC (Fig. 1). As a whole, in the presence of a higher XDOPC, the decrease in turnover rate would be due not only to an increase in t(EP) (Table 3) but also to the hydrophobic mismatch (Fig. 7).
An important difference between SERCA and PMCA is that the latter is activated by calmodulin and acidic phospholipids (11, 59). PMCA activation by these modulators involves conformational changes that, among other changes, modify the accessible area to lipids of the transmembrane domain (60). The acidic phospholipid binding region is a basic sequence enriched in Lys residues, located near the lipid/water interface of the first cytosolic loop (61). Thus, considering the higher density of Lys residues in the acidic phospholipid region near the interface, it is possible that PMCA has a more stringent optimum thickness with respect to SERCA and Na/K-ATPase. In other words, this region has structural effects that may favor a narrow hydrophobic thickness for PMCA. If we consider that the secondary structure of the helices mostly does not change, it is clear that the transmembrane helices should adopt various tilt angles, depending on the mismatch (62), producing a higher protein-lipid interaction. On this subject, Mitra et al. (63) showed that, although the average thickness of biological membranes is 30 Å, variations up to 5 Å arise when protein is inserted in these membranes. Therefore, it could be possible that in a physiological condition, PMCA causes a thickness decrease in its environment that leads to its optimum activity. In conclusion, differential modulation by neutral phospholipids could be a general mechanism for regulating membrane protein function.
We are indebted to Drs. Rolando C. Rossi, Joshua R. Berlin, and Mariela Ferreira-Gomes (Universidad de Buenos Aires) for helpful comments and to Fundosol (Argentina) for kindly providing the human blood.
*This work was supported by Agencia Nacional de Promoción Científica y Tecnológica, CONICET, and Universidad de Buenos Aires, Ciencia y Técnica.
2The abbreviations used are: