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Logo of jbcThe Journal of Biological Chemistry
J Biol Chem. 2015 January 30; 290(5): 3121–3136.
Published online 2014 December 8. doi:  10.1074/jbc.M114.628628
PMCID: PMC4317045

Pompe Disease Results in a Golgi-based Glycosylation Deficit in Human Induced Pluripotent Stem Cell-derived Cardiomyocytes*An external file that holds a picture, illustration, etc.
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Infantile-onset Pompe disease is an autosomal recessive disorder caused by the complete loss of lysosomal glycogen-hydrolyzing enzyme acid α-glucosidase (GAA) activity, which results in lysosomal glycogen accumulation and prominent cardiac and skeletal muscle pathology. The mechanism by which loss of GAA activity causes cardiomyopathy is poorly understood. We reprogrammed fibroblasts from patients with infantile-onset Pompe disease to generate induced pluripotent stem (iPS) cells that were differentiated to cardiomyocytes (iPSC-CM). Pompe iPSC-CMs had undetectable GAA activity and pathognomonic glycogen-filled lysosomes. Nonetheless, Pompe and control iPSC-CMs exhibited comparable contractile properties in engineered cardiac tissue. Impaired autophagy has been implicated in Pompe skeletal muscle; however, control and Pompe iPSC-CMs had comparable clearance rates of LC3-II-detected autophagosomes. Unexpectedly, the lysosome-associated membrane proteins, LAMP1 and LAMP2, from Pompe iPSC-CMs demonstrated higher electrophoretic mobility compared with control iPSC-CMs. Brefeldin A induced disruption of the Golgi in control iPSC-CMs reproduced the higher mobility forms of the LAMPs, suggesting that Pompe iPSC-CMs produce LAMPs lacking appropriate glycosylation. Isoelectric focusing studies revealed that LAMP2 has a more alkaline pI in Pompe compared with control iPSC-CMs due largely to hyposialylation. MALDI-TOF-MS analysis of N-linked glycans demonstrated reduced diversity of multiantennary structures and the major presence of a trimannose complex glycan precursor in Pompe iPSC-CMs. These data suggest that Pompe cardiomyopathy has a glycan processing abnormality and thus shares features with hypertrophic cardiomyopathies observed in the congenital disorders of glycosylation.

Keywords: Autophagy, Cardiomyopathy, Golgi, Induced Pluripotent Stem Cell (iPSC), Lysosomal Glycoprotein, N-linked Glycosylation, Tissue Engineering, Pompe Disease


Infantile-onset Pompe disease is an autosomal recessive glycogen storage disorder caused by the complete loss of acid α-glucosidase (GAA)2 activity, the sole enzyme responsible for hydrolyzing glycogen into free glucose within the lysosome. Without GAA activity, glycogen accumulates within the lysosomes and is associated with prominent pathological manifestations in skeletal and cardiac muscle. The disease presents during the first days to months of life, and without enzyme replacement therapy with recombinant human GAA, patients die within 1 year due to respiratory insufficiency or cardiac complications including arrhythmias and heart failure (1, 2). Enzyme replacement therapy represents a major breakthrough in prolonging survival, but the treatment is not curative and has significant limitations. For example, patients can develop immune reactivity to the intravenously administered enzyme (3). Skeletal muscle often becomes refractory to treatment due to the endosomal and autophagic sequestration of recombinant human GAA, which prevents it from reaching the lysosomes, resulting in the reaccumulation of glycogen (4). Although the cardiomyopathy can be suppressed indefinitely if treatment is initiated early, long-term treatment is complicated by arrhythmias (5, 6). Thus, there remains significant need to further advance the understanding of Pompe pathophysiology in order to improve treatment strategies.

The mechanisms by which lack of GAA activity and lysosomal glycogen accumulation cause muscle pathology have been investigated primarily in skeletal muscle. Electron micrographs of patient skeletal muscle demonstrate a progressive replacement of contractile structures with glycogen-filled lysosomes and free glycogen (7). Moreover, both intact and skinned muscle fibers from the Pompe mouse model produce less force, compared with healthy controls (8). While these data provide some explanation for the global skeletal muscle weakness, mechanisms leading to the early cardiac phenotype of hypertrophic cardiomyopathy are largely unknown.

Autophagic dysfunction has been implicated as an upstream pathology leading to skeletal muscle wasting (9, 10). Pompe skeletal muscle has accumulations of autophagosomes and ubiquitinated protein aggregates, indicating that the lysosomes are not digesting intracellular materials at a sufficient rate (11). The observation that glycogen-filled lysosomes have neutral pH supports the argument for lysosomal incompetence (12). Lysosomal rupture and insufficient clearance of old/damaged mitochondria (mitophagy) are hypothesized to be direct mechanisms of contractile protein loss via release of acid and hydrolytic enzymes into the cytosol and increased mitochondrial reactive oxygen species production (13).

In cardiac muscle the pathology differs with the development of hypertrophy rather than atrophy. Whether autophagy is central to cardiac pathophysiology is unknown (14). Pompe cardiomyopathy is classified as a hypertrophic cardiomyopathy because of the marked thickening of the ventricular walls and associated hyperdynamic systolic function with outflow tract obstruction. These features are shared with familial hypertrophic cardiomyopathies due to mutations in the myosin heavy chain genes or other myofilament genes in which abnormalities in contractile properties are thought to induce hypertrophy. Whether Pompe cardiomyocytes exhibit abnormalities in contractile function has not yet been investigated directly (15, 16).

In this study, we generated human induced pluripotent stem (iPS) cells from two different patients with infantile Pompe disease and differentiated them to iPS cell-derived cardiomyocytes (iPSC-CMs) as a model to study the cardiac manifestations of Pompe disease. The Pompe iPSC-CMs exhibited undetectable GAA activity and pathognomonic glycogen-filled lyososomes. Engineered cardiac tissue (ECT) generated from Pompe and control iPSC-CMs demonstrated no consistent differences in contractile strength or kinetics. Moreover, Pompe iPSC-CMs were capable of lysosomal digestion of autophagosomes to the same extent as controls. However, we observed differences in the electrophoretic mobilities and isoelectric points of lysosome-associated membrane proteins (LAMPs) from Pompe iPSC-CMs in comparison with control iPSC-CMs. We provide evidence of Pompe iPSC-CM-specific deficits in LAMP1 and LAMP2 glycosylation as well as global deficits in N-linked glycan synthesis that occur in the Golgi. We propose that infantile Pompe disease may share disease mechanisms with other congenital disorders of glycosylation that have similar Golgi-based glycosylation deficiencies and also have clinical presentations that include hypertrophic cardiomyopathy and muscle weakness early in life (17, 18).


Generation of iPS Cells from Skin Fibroblasts

Patient dermal fibroblasts (I.D. GM20089, GM20123, and GM04912) were purchased from the National Institute of General Medical Sciences Human Genetic Cell Repository at the Coriell Institute for Medical Research and reprogrammed into iPS cells using the six-factor (OCT4, NANOG, SOX2, KLF4, LIN28, and cMYC) lentiviral transfection protocol (19). The iPS cells were cultured with the TeSR/Matrigel system (20), verified as pluripotent with teratoma assays in SCID/beige mice, and Giemsa band-karyotyped before aliquots were frozen for later experimentation.

Acid α-Glucosidase Genotyping, Activity Assay, and Immunodetection

Pompe line GM04912 gDNA was PCR-amplified with the G→A and delT primers listed in Table 1. The PCR products were agarose gel purified and directly cycled sequenced. The del ex18 primers given in Table 1 were used to amplify the region containing the exon 18 deletion in Pompe line GM20089. The PCR products were then separated on an agarose gel. Acid glucosidase activity was measured by hydrolysis of 4-methylumbelliferyl-α-d-glucoside (4-MUG, Sigma) at pH 4 to release the fluorophore 4-methylumbelliferone (4-MU) as described previously (21). GAA protein from iPS cells was immunoblotted with rabbit polyclonal anti-GAA (gift from Duke Glycogen Storage Disease Laboratories) using the one-dimensional Western blotting procedure described below.

Primers for GAA genotyping

Differentiation of iPS Cells into Cardiomyocytes

The iPS cell lines were differentiated into cardiomyocytes using a small molecule-directed differentiation protocol in a 12-well plate format (22). Once differentiated, cardiomyocytes were maintained in RPMI medium (Invitrogen) supplemented with B27 (Invitrogen) (RPMI/B27). At 30 days following initiation of differentiation, cells were dissociated with 10× TryPLE (Invitrogen) as clumps, replated onto gelatin-coated T75 flasks in DMEM/20% FBS for 2 days, and then maintained for another 8 days in RPMI/B27. Cells were then dissociated to single cells with 10× TryPLE and 1) used for ECT formation as described in the next section, 2) replated onto gelatin-coated 12-well plates (first 2 days in DMEM/20% FBS followed by RPMI/B27) at 1 million cells/well for protein studies, or 3) plated at a variety of densities on glass coverslips for immunocytochemistry. For electron microscopy, contracting regions were microdissected from original differentiation plates and replated on glass coverslips as three-dimensional clusters. After 10 days of culture, cardiomyocytes were ready for downstream experimentation. For certain protein studies, iPSC-CMs were treated with chloroquine (catalog No. C6628, Sigma) at 20 μm for 2 days or with brefeldin A (catalog No. B-8500, LC Laboratories) at 500 ng/ml for 2 days or cultured in 100 mm sucrose for 2 weeks.

Engineered Cardiac Tissue Preparation and Functional Testing

Differentiated cardiomyocytes were dissociated from T75 flasks and used to prepare fibrin-based ECTs with a protocol adapted from elsewhere (23, 24). Prior to ECT formation, 1 million cardiomyocytes from the single cell suspension were fixed in 2% paraformaldehyde and processed for cTnT (cardiac isoform Ab-1, Thermo Fisher Scientific) flow cytometry to determine CM purity. Only ECT data from CM preparations that were >80% cTnT+ were included in contractile analysis. The remaining CM suspension was cultured for 3 h on a rotating platform at 45 rpm in a 10-cm Petri dish in ECT medium. The composition of ECT medium is described in de Lange et al. (25) as “mouse media”. Cell clumps from the rotational culture were mixed with scaffolding reagents in the following ratios: 1.2 million cells:5 mg of fibrinogen:0.5 unit of thrombin in 200 μl total volume of ECT medium. Each ECT was prepared from 200 μl of the mixture pipetted into 20 × 3-mm cylindrical molds of the Flexcell Tissue Train silicone membrane culture plate (Flexcell International) according to methods detailed in de Lange et al. (25). Gelatinized ECTs were then maintained for 2 weeks in ECT medium containing tranexamic acid (Sigma) at 400 μm and aprotinin (Sigma) at 33 μg/ml. A subset of ECTs was externally paced with the C-pace apparatus (IonOptics) for 1 week at 2.5 Hz after an initial 1 week of culture before being harvested for functional studies. Force measurements were made in a model 801B small intact fiber test apparatus (Aurora Scientific), as described previously (25), while being perfused with Krebs-Henseleit buffer and paced externally. A stationary arm and force transducer (model 403A, Aurora Scientific), to which the ECT is attached at both ends with sutures, were controlled by a micrometer for measurement of stretch length. Twitch recordings from which contractile kinetics were measured were obtained at the length of maximum isometric force.

Protein Isolation for Western Blotting

Protein from confluent cardiomyocyte cultures was harvested by directly adding radioimmune precipitation assay buffer to each well after being washed once with PBS (no Ca2+ or Mg2+). One well/12-well plate was harvested for the measurement of cardiomyocyte purity. For protein studies only, preparations of >90% cTnT+ were used. Cells were transferred to a Microfuge tube, sonicated, and then subjected to a methanol:chloroform:water biphasic extraction (26). Protein pellets were redissolved in 5% SDS solution and stored at −80 °C until analysis. Samples were boiled in 5% β-mercaptoethanol before electrophoresis. SDS-PAGE was performed with Bio-Rad 4–15% Criterion precast gels for 42 min at 201 V, and proteins were transferred in a Criterion blotter with plate electrodes to Immobilon-FL PVDF membranes (Millipore) for 18 h at 11 V in Towbin buffer. Blotting was performed with the following primary antibodies: anti-LC3 (catalog No. NB100-2220, Novus Biologicals), LAMP1 (clone H4A3, Developmental Studies Hybridoma Bank (DSHB)), LAMP2 (clone H4B4, DSHB), p62 (catalog No. ab56416, Abcam), mono- and polyubiquitin (catalog No. BML-PW8810, clone FK2, Enzo Life Sciences), and GAPDH (catalog No. G9545, Sigma). Washes were performed in TBS with 0.05% Tween-20 (TBST) and blocking with 5% goat serum. For dystroglycan analysis, wheat germ agglutinin (WGA)-agarose beads (catalog No. AL-1023, Vector Laboratories) were incubated with iPSC-CM total protein lysates for glycoprotein enrichment. The WGA-bound glycoprotein fraction was then processed for immunodetection of α- and β- dystroglycan and laminin-binding capacity according to methods found in Hansen et al. (24).

Proteins were concentrated via biphasic extraction, separated, and transferred to PVDF as described above. The following antibodies were used to probe the glycoprotein fraction: βDG (clone 43DAG1/8D5, Abcam), anti-α-dystroglycan (αDG) (clone IIH6c4, DSHB), and anti-αDG (clone VIA4-1, DSHB). The laminin overlay assay was performed as described by Michele et al. (27) with the following reagents: Engelbreth-Holm-Swarm laminin (catalog No. L2020, Sigma) and anti-laminin (catalog No. L9393, Sigma). Secondary antibodies were all Alexa Fluor-conjugated with fluorescent signals detected with the Bio-Rad ChemiDoc system.

Two-dimensional Western Blotting

Electrophoresis in two dimensions began with the carrier ampholine method of isoelectric focusing (IEF), as described elsewhere (28, 29), within a glass tube containing 4% polyacrylamide and 2% IsoDalt Servalytes, pH 3–10 (Serva, Heidelberg, Germany), in a 9 m urea buffer. IEF was performed for 9600 V-h with WGA glycoprotein extracts from 4 million cells boiled in a 5%SDS, 5% β-ME solution and then mixed with 9 m urea/2 M thiourea at a 1:1 ratio before being applied to the acidic end of the tube. Following IEF, the tubes were equilibrated for 5 min in 10% glycerol, 50 mm DTT, 2.3% SDS and 0.0625 m Tris, pH 6.8, and then boiled for 5 min in a water bath. The tube gels were sealed on a stacking gel overlaying a 7% acrylamide separating gel. SDS-PAGE occurred for 4 h at 15 mA. The gel was then transferred to a PVDF membrane for 18 h at 22 V with a Criterion tank blotter in Towbin buffer. Western blotting was then identical to that described for the one-dimensional method.


Cardiomyocyteson glass coverslips were fixed in 10% neutral buffered formalin for 15 min at room temperature, washed with TBS, permeabilized in 20 μg/ml digitonin for 10 min, blocked in 5% goat serum, and probed with the following antibodies in addition to the ones used for immunoblotting: Golgin-97 (clone CDF4, Novex) and GM130 (clone EP892Y, Abcam). For ECT histology, the tissues were immersed in Dent's fixative overnight at 4 °C, embedded in paraffin, and sectioned at 8 μm thickness. Once on glass slides and rehydrated, the sections were stained with H&E or cTnT. All nuclei were detected with DAPI.

Electron Microscopy

Cardiomyocyte clusters were fixed in 2.5% paraformaldehyde, 3% gluteraldehyde in 0.1 m cacodylate buffer overnight at 4 °C, post-fixed in 1% osmium tetroxide, dehydrated in ethanol gradient, embedded in Durcapan (Fluka), sectioned at 60 nm, and stained with lead citrate and uranium acetate. All images were taken on a Philips CM120 transmission electron microscope.

N-Linked Glycan Identification by MALDI-TOF-MS

10 million iPSC-CMs/cell line were subjected to chloroform:methanol:water lipid extraction three times, and then the pellets were washed/precipitated with cold acetone:water three times. A weighed amount of high protein powder from each sample was digested with trypsin/chymotrypsin in Tris-HCl buffer overnight. After protease digestion, each sample was passed through a C18 Sep-Pak cartridge and washed with 5% acetic acid, and the glycopeptides were eluted with a blend of isopropanol in 5% acetic acid.

The glycopeptides were treated with PNGase F to release the N-linked glycans, and each of the digests was passed through a C18 Sep-Pak cartridge to recover the N-glycans. The N-glycan fractions were subsequently lyophilized and permethylated for structural characterization by mass spectrometry (30). Each dried eluate was dissolved with dimethyl sulfoxide and methylated with NaOH and methyl iodide. The reaction was quenched with water, and per-O-methylated carbohydrates were extracted with methylene chloride and dried under N2. The permethylated glycans were dissolved with methanol and crystallized with an α-dihyroxybenzoic acid (20 mg/ml in 50% methanol:water) matrix. Analysis of glycans present in the samples was performed in the positive ion mode by MALDI-TOF/TOF-MS using AB SCIEX TOF/TOF 5800 (Applied Biosystem/MDS Analytical Technologies). The above N-linked glycan mass spectrometry studies were performed by the Complex Carbohydrate Research Center Analytical Services at the University of Georgia, Athens, GA.


Reprogramming Pompe Disease Fibroblasts into iPS Cells

Skin fibroblasts from two unrelated infantile-onset Pompe patients, designated Pompe 1 and Pompe 2, were reprogrammed into iPS cells using the overexpression of a set of factors as described previously (19). In addition, skin fibroblasts from the healthy mother of the Pompe 1 patient, referred to as Control 1, were also reprogrammed. Consistent with the cells being reprogrammed to a pluripotent state, nuclear immunolabeling for the pluripotency-related transcription factor OCT4 was present as was cell surface immunolabeling for stage-specific embryonic antigen 4 (SSEA4) (Fig. 1A). The cell line karyotypes were confirmed as normal 46XX in Pompe 1 and Control 1 and 46XY in Pompe 2 (Fig. 1B). The new cell lines were tested for pluripotency using a teratoma assay in immunocompromised mice. As shown in Fig. 1C, the formation of all three embryonic germ layers occurred for each of the new iPS cell lines. The other human iPS cell line studied in this work, called Control 2, was reprogrammed previously from lung fibroblasts and characterized (31). Table 2 summarizes the source and properties of the cell lines used in this study.

Characterization of iPS cells reprogrammed from patient dermal fibroblasts. A, immunofluorescence of iPS cell cultures probed with anti-OCT4 (nuclear) and anti-SSEA4 (plasma membrane) markers of pluripotency. Scale bar = 100 μm for panels and ...
iPS cell line nomenclature, GAA genotype, and phenotype

Pompe iPS Cells Have Disease-causing Acid α-Glucosidase Mutations Resulting in Undetectable Mature Protein and Enzymatic Activity

The mutations in the GAA gene in the original Pompe fibroblasts were evaluated in the corresponding iPS cell lines. The Pompe 1 cell line has a homozygous exon 18 deletion of ~550 bp in GAA, as demonstrated by the PCR product in Fig. 2A of the genomic DNA region surrounding exon 18. The Control 1 iPS cell line, originating from skin fibroblasts from the mother of Pompe 1, is heterozygous for the exon 18 deletion in the GAA gene. In comparison, the Control 2 iPS cell line is homozygous wild type for exon 18 of GAA.

The acid α-glucosidase genotype and biochemical phenotype in Pompe and control iPS cell lines. A, PCR products of the genomic DNA region that includes GAA exon 18 from Pompe 1, Control 1, and Control 2 iPS cell lines separated on a 0.8% agarose ...

The Pompe 2 line is a null compound heterozygote at the GAA locus with one allele containing a deletion of a T nucleotide at cDNA position 1441 (Fig. 2B), resulting in a frameshift and a premature stop codon 39 amino acids downstream. The other allele has a G to A transition at position 2237 (Fig. 2B), producing a UAG stop codon at that location. For comparison, the wild-type sequence from Control 2 genomic DNA are shown.

To test the impact of the Pompe mutations on the expression of GAA protein, Western blotting of iPS cell protein lysates with an anti-GAA antibody revealed the active lysosomal 70- and 76-kDa forms of GAA in control but not Pompe lines (Fig. 2C). No significant immunoreactivity for GAA was found from the Pompe 2 sample, but the Pompe 1 sample demonstrated the GAA precursor around a molecular mass of 110 kDa like the controls (32). This is consistent with a previous report that the deletion of exon 18 allows for a precursor peptide to be translated but not processed into an active form (33).

To ascertain whether the mutations in the Pompe cell lines affects GAA function, protein lysates from iPS cells were assayed for GAA activity via incubation with the substrate 4-MUG at pH 4. Hydrolysis of this substrate releases the fluorophore 4-MU and free glucose. Both Pompe lines had no detectable GAA activity compared with the control lines, which demonstrated activity in the expected range (Fig. 2D). The GAA activity of Control 1 was approximately ½ that of Control 2, suggesting a gene dosage effect because Control 1 has one functional GAA allele, whereas Control 2 has both copies active. As an assay control, 4-MUG was incubated at pH 7 to measure neutral-α-glucosidase activity. Equivalent neutral-α-glucosidase activity was measured in all lines, confirming that the catalytic deficit in Pompe disease is due to the hydrolysis of the α1–4 glucosidic bond at the typical acidic pH of the lysosome.

Pompe iPSC-derived Cardiomyocytes Have Pathognomonic Glycogen-filled Lysosomes

A feature found in striated muscle from patients with Pompe disease is lysosomal glycogen accumulation (34). We examined the ultrastructure of control and Pompe iPSC-CMs under standard culture conditions by using electron microscopy. The cytoplasm of both Pompe and control iPSC-CMs revealed abundant glycogen β-particles in Fig. 3A, a feature found in embryonic cardiomyocytes (35). To differentiate lysosomal from cytoplasmic glycogen, the iPSC-CMs were cultured in medium without glucose overnight. Ultrastructure of control iPSC-CMs deprived of glucose (Fig. 3B) shows a disappearance of glycogen β-particles. The Pompe iPSC-CMs also have a depleted cytoplasmic glycogen pool; however, glycogen β-particles remain in membrane-isolated structures (Fig. 3, B and C). In contrast, lysosomes from Control 1 iPSC-CMs are identified with electron dense material without evident glycogen. Likewise, the Control 2 and Pompe 2 iPSC-CMs showed a comparable distinction in lysosomal glycogen accumulation (data not shown).

Ultrastructure of Pompe and control iPSC-CMs. A, electron micrographs of Control 1 and Pompe 1 iPSC-CMs cultured in media containing 4.5 g/liter glucose. Scale bar = 5 μm B, electron micrographs of Control 1 and Pompe 1 iPSC-CMs cultured in zero ...

Contractile Function of Engineered Cardiac Tissue Produced with Control and Pompe iPSC-CMs

Given the limited understanding of cardiac contractile function in Pompe disease in the setting of profound cardiac hypertrophy, we produced ECT with iPSC-CMs to assess contractile performance. After 2 weeks of culture, the ECTs remodeled into linear strips of spontaneously contracting tissue (Fig. 4A and supplemental Movie 1) that were cellularized (Fig. 4B) with cardiomyocytes located circumferentially as visualized with cTnT immunofluorescence (Fig. 4C). Electron micrographs of control and Pompe ECTs displayed elongated nuclei and longitudinally oriented myofilaments (Fig. 4, D and E). However, only in the Pompe ECT were glycogen-filled lysosomes evident.

Structural characterization of ECTs produced with control and Pompe iPSC-CMs. A, photograph of an ECT in perfusion chamber before testing. The left end is tied to a stationary arm, and the right end will soon be attached to the force transducer. Scale ...

ECTs were stimulated at 2.5 Hz, and isometric force generation was measured. Pompe 1 ECTs demonstrated significantly accelerated kinetics of contraction compared with the other lines tested (Fig. 5A and Table 3). However, we noted differences in the intrinsic rates at which the ECTs contracted during the 2 weeks of culture during ECT maturation. Pompe 1 ECTs had an intrinsic rate (2.2 Hz) that was at least double the intrinsic rate of the other lines studied (Table 3). Therefore, we conducted another series of experiments in which all ECTs were conditioned by pacing at 2.5 Hz for 1 week in culture prior to force measurements to provide a uniform rate of contraction. Pacing for 1 week accelerated the contraction kinetics for the three lines that had slower intrinsic rates to a greater extent than for Pompe 1 ECTs, which had a fast intrinsic rate (Fig. 5B). For the conditioned ECTs, the normalized force (F/Fmax) and the first derivative (dF/dt/Fmax) versus time relationships (Table 3) showed no consistent differences between ECTs prepared from the two control and two Pompe cell lines (Fig. 5, C and D, and Table 3).

Contractile force and kinetic studies of ECTs produced with control and Pompe iPSC-CMs. A, force normalized to maximum force (F/Fmax) versus time curves for a single contraction at 2.5 Hz from ECTs contracting at their intrinsic rate (unpaced) while in ...
Comparison of kinetic parameters and maximum force

Macro-autophagic Function Is Preserved in Pompe iPSC-CMs

Recent studies in Pompe skeletal muscle have implicated impaired autophagic flux as a major contributor to the pathogenesis of myofiber destruction (8). However, the role of autophagic dysfunction in the myocardium of infantile-onset Pompe patients is unknown (14). To examine autophagosomal turnover in the Pompe iPSC-CM model, we forced autophagosome accumulation by blocking lysosomal acidification with chloroquine (CQ). Removal of CQ from the media re-establishes lysosomal function and autophagosomal clearance (36). To detect the autophagosomal system, we examined the microtubule-associated protein light chain 3 (LC3), which is synthesized in a soluble cytoplasmic form (LC3-I) and, upon induction of autophagy, becomes lipidated and anchors in the autophagosome membrane as LC3-II. Immunofluorescence studies demonstrate LC3 fluorescence on day 0 (D0) is diffuse through the cytoplasm, highlighting the LC3-I form. However, following CQ exposure the fluorescence becomes more intense and punctate, representing conversion to the membrane localized LC3-II form (Fig. 6A). These results demonstrate that treatment with CQ cause autophagosomal accumulation in the iPSC-CMs.

Autophagosomal flux in control and Pompe iPSC-CMs during recovery from CQ-mediated lysosomal arrest. A, immunofluorescence image of LC3 in control and Pompe iPSC-CMs before and after 2 days of CQ treatment. DAPI stains the nuclei blue. Scale bar = 10 ...

Western blots with anti-LC3 were evaluated for iPSC-CMs during CQ treatment and recovery along with anti-GAPDH loading controls (Fig. 6B). Densitometric ratios of LC3-II/GAPDH show that all lines experienced a rise in LC3-II following 48 h of 20 μm CQ treatment (Fig. 6C); the rise was between 15- and 20-fold above baseline ratios. At day 1 of recovery (R1), all lines showed a decline in LC3-II, except for Pompe 2 iPSC-CMs, which consistently demonstrated a rise in LC3-II at R1. By 8 days of recovery (R8), all control and Pompe iPSC-CMs were able to reduce their LC3-II burden toward baseline (D0) levels. Therefore, a CQ-based autophagic challenge did not reveal persistent autophagosomal (LC3-II) accumulation or a slower autophagic flux in Pompe iPSC-CMs compared with the control iPSC-CMs. Secondary markers of autophagic dysfunction, such as the autophagy adaptor protein p62 and polyubiquitinated proteins, were not significantly different in Pompe versus control iPSC-CMs (Fig. 6, D and E).

The lysosomal system also changes dramatically when exposed to CQ, as visualized in Fig. 7A with anti-LAMP1 (37). Before CQ treatment, LAMP1 labeling is punctate in control iPSC-CMs but outlines larger lysosomal structures in Pompe cells. In response to CQ, both Pompe and control cells experience an expansion of the lysosomal population both in quantity and/or size.

Analysis of LAMPs from control and Pompe iPSC-CMs before and after CQ treatment. A, LAMP1 immunofluorescence in control and Pompe iPSC-CMs before (D0) and after 2 days of CQ treatment (Tx). DAPI stains the nuclei blue. Scale bar = 10 μm. B, LAMP1 ...

The LAMP1 immunoblots in Fig. 7B show an increase in intensity following CQ treatment for the control iPSC-CMs, but in the Pompe iPSC-CMs an unexpected change in electrophoretic mobility of LAMP1 was observed. LAMP1-SDS complexes from control cells have an apparent molecular mass of 100 kDa, whereas LAMP1 in the Pompe lines present as a smear with prominent bands below 100 kDa. Following CQ treatment, the intensity of the lower mobility LAMP1 band in the Pompe lines increased concomitant with diminishing amounts of the higher mobility forms. The mobility of LAMP1 in the control lines remains the same upon CQ exposure. We also investigated the immunoblotting patterns of LAMP2 (Fig. 7C), which co-exists with LAMP1 as a glycoprotein on the lysosomal membrane. Like LAMP1, LAMP2 presents as a single band in the control lines but as multiple bands of higher mobility in the Pompe lines. Also like LAMP1, control lines experience an increase in LAMP2 intensity with no change in mobility as a result of CQ exposure, whereas Pompe cells demonstrate a reduction in LAMP2-SDS complex mobility in response to CQ.

Lysosomal Membrane Proteins Are Hypoglycosylated in Pompe iPSC-CMs

We decided to investigate the cause for the differences in mobility of the LAMPs in the Pompe iPSC-CMs by focusing on glycosylation, as both of these proteins are heavily glycosylated by traditional N- and O-linked endoplasmic reticulum (ER)-to-Golgi glycan biosynthesis pathways. In addition, several of the N-linked adducts are modified by long poly-N-acetyllactosamines added in the Golgi apparatus (38,41). To test the hypothesis that a deficit in Golgi-based glycosylation is the source of lower molecular weight LAMP species, iPSC-CMs were exposed to brefeldin A (BFA), a fungal metabolite that causes collapse of the Golgi stacks, disrupting Golgi-based glycosylation (42). Immunolabeling of control and Pompe iPSC-CMs for the cis-Golgi marker, GM130, and trans-Golgi, marker Golgin-97 (Fig. 8A), confirmed that BFA treatment dismantled the Golgi stack cis-to-trans orientation moving outwards from the nucleus. As a result of Golgi disruption, control iPSC-CMs harbored the higher mobility forms of LAMP1 and LAMP2 normally present in the Pompe group (Fig. 8B). Similarly, the Pompe iPSC-CMs treated with BFA showed an increase in the intensity of the higher mobility LAMPs at the cost of the lower mobility species. Therefore, we were able to reproduce in the control lines the immunoblotting pattern of the LAMPs unique to the Pompe lines by interfering with the ability of the control iPSC-CM Golgi to glycosylate proteins. Moreover, the Pompe disease-specific LAMP patterns were exaggerated in the Pompe iPSC-CMs through Golgi disruption.

Effect of Golgi structural disruption and induction of an artificial lysosomal storage disorder on LAMP1 and LAMP2 from control and Pompe iPSC-CMs. A, the Golgi apparatus stained with cis- and trans-Golgi marker GM130 and Golgin-97, respectively, in control ...

As Pompe iPSC-CMs had no overt Golgi structural pathology, we next tested whether the hypoglycosylation of the LAMPs was a general response to lysosomal expansion or specific to lysosomal glycogen accumulation occurring in Pompe disease. We cultured the iPSC-CMs in 100 mm sucrose to induce a “sucrosome” storage disorder (43). In high sucrose concentrations, cells lacking invertase activity gradually accumulate cytoplasmic sucrose, which enters the endosomal/autophagic system and is ultimately trapped in the lysosome. Control 2 iPSC-CMs demonstrated lysosomal expansion marked by LAMP1 due to sucrose uptake (Fig. 8C). However, immunoblot detection of LAMP1 and LAMP2 following sucrose culture (Fig. 8B) revealed no changes in species mobility in the Control 1 and Control 2 iPSC-CMs, suggesting that the higher mobility of LAMPs from Pompe cells is not due to lysosomal accumulation of a nonmetabolizable carbohydrate. Sucrose treatment did increase the lower mobility LAMP1 and LAMP2 band intensities in the Pompe lines, indicating that the new LAMPs being synthesized were undergoing correct Golgi glycosylation.

In contrast to the different mobilities of LAMP1 and LAMP2 in Pompe and control iPSC-CMs, no differences in LAMP mobilities were observed in the original skin fibroblasts or undifferentiated iPS cells (Fig. 8D). The cell type dependence of LAMP hypoglycosylation has implications for understanding the tissue-specific manifestation of Pompe disease pathology.

To further characterize the deficit of glycosylation, protein lysates were tested for endoglycosidase sensitivity. Treatment of lysates from iPSC-CMs with endoglycosidase F (Endo F), which cleaves all N-linked glycans at their asparagine, produces a de-N-glycosylated LAMP2 of equal molecular weight in Pompe and control cells (Fig. 9A). Protein lysates were also subject to endoglycosidase H (Endo H) treatment to determine the extent of Golgi-glycan processing. Endo H only cleaves N-glycans if they have not been acted upon by the Golgi enzyme α-mannosidase II (αManII), the committing reaction to downstream complex N-linked glycan synthesis (44). Control 2 and Pompe 2 lines showed a subtle increase in LAMP2 mobility upon Endo H treatment, implying that a subpopulation of N-linked glycans is not processed by αManII (Fig. 9A). Similar Endo H sensitivity between Control 2 and Pompe 2 LAMP2 suggests the deficit in Golgi processing is not from lack of entry into the Golgi or the inaction of Golgi mannosidases but by reduced Golgi-glycotransferase activity, responsible for post-αManII complex glycan extension. The results from LAMP1 endoglycosidase treatment and from the Control 1 and Pompe 1 lines were the same.

Glycosylation analysis of LAMP2 from control and Pompe iPSC-CMs via endoglycosidase treatment and two-dimensional glycoprotein separation. A, endoglycosidase analysis of LAMP2 in Control 2 and Pompe 2 iPSC-CMs. Endo F cleaves all N-linked glycan chains, ...

The LAMPs have a significant number of sialic acid sugars added in the Golgi (45). We hypothesized that incomplete Golgi-based glycosylation in Pompe iPSC-CMs that affects the apparent molecular weight would also change the pI due to incomplete addition of charged sugars such as the sialic acids. To evaluate for this possibility, we performed IEF in two-dimensional PAGE followed by immunodetection of LAMP2.

Enrichment of glycoproteins via WGA pulldown was necessary to immunodetect the LAMPs following two-dimensional separation and membrane transfer. The WGA method increased the amount of LAMP2-to-total protein ratio and captured the higher mobility species observed in Pompe iPSC-CMs (Fig. 9B). The flow-through contained an undetectable amount of LAMP2 (Fig. 9C). Therefore, data from the two-dimensional blots were not confounded by the purification method employed.

Isoelectric separation revealed LAMP2 detection at pH 4.6 from Control 1 and 2 cells, at pH 5.6 from the Pompe 1 cells and as a distribution between pH 5.0 and 6.4 in Pompe 2 cells (Fig. 9D). Treatment of WGA-enriched glycoprotein with sialidase, an exoglycosidase with specificity for terminal sialic acid carbohydrates, produced an alkaline pI shift in Control 1 LAMP2 to pH 5.3–6.1 but had little to no effect on the pI of Pompe 1 LAMP2 (Fig. 9D). Therefore, the pI studies are consistent with a reduction in the amount of acidic sugar (sialic acid) added to LAMP2 in Pompe iPSC-CMs.

Pompe iPSC-CMs Have a Global Deficiency in N-Linked Glycan Synthesis

For an assessment of total N-linked glycans, MALDI-TOF-MS was performed on purified N-linked glycans released by Endo F treatment of 10 million control or Pompe iPSC-CMs per sample. Mass spectra of Control 1 and Pompe 1 (Fig. 10) and Control 2 and Pompe 2 (Fig. 11) N-linked glycans demonstrate the presence of all high mannose structures in all cell lines (Table 4). A major peak at m/z = 1345.6 corresponding to a fucosylated chitobiose trimannose structure (Fuc)(NacGln)2(Man)3 was present exclusively in the Pompe spectra (Figs. 10B and and1111B). All complex-type N-linked glycans have a trimannose core produced by the αManII/IIx class of Golgi glycosidases before branching and extension into complex glycans (46). The unmodified trimannose core was not detected in the control spectra (Figs. 10A and and1111A). Both Pompe and control cells have biantennary structures with N-acetylglucosamine, galactose, and sialic acids. However, Pompe cells are deficient in the higher complexity bisecting biantennary and multiantennary glycans (Table 4).

Mass spectra of N-linked glycans from Control 1 and Pompe 1 iPSC-CMs. Mass spectra obtained from MALDI-TOF-MS of N-linked glycans from Control 1 (A) and Pompe 1 (B) iPSC-CMs. Equal (weighed) amounts of total cellular protein per sample were processed ...
Mass spectra of N-linked glycans from Control 2 and Pompe 2 iPSC-CMs. Mass spectra obtained from MALDI-TOF-MS of N-linked glycans from Control 2 (A) and Pompe 2 (B) iPSC-CMs. See Fig. 10 legend for description.
Structures of N-linked glycans from Pompe and control iPSC-CMs identified by MALDI-TOF-MS

Golgi-based Glycosylation and Laminin Binding Capability of α-Dystroglycan Is Preserved in Pompe iPSC-CMs

From the finding that the deficit of Pompe LAMP glycosylation was in the Golgi, we hypothesized that αDG is also hypoglycosylated in Pompe iPSC-CMs, because αDG undergoes O-linked glycosylation via the like-acetylglucosaminyltransferase (LARGE) located in the Golgi (47). The disaccharide polymer (xylose-glucuronic acid)n added by LARGE, functions as the binding domain for laminin and if lacking causes a class of muscular dystrophies called the dystroglycanopathies (27, 48, 49). Since Pompe disease shares a similar clinical presentation with dystroglycanopathies (50), we tested the hypothesis that a loss of laminin binding by αDG contributes to Pompe cardiomyopathy.

Antibody clones IIH6c4 and VIA4-1, which recognize only the LARGE processed form of αDG (51, 52), were used in quantitative immunoblot assays of WGA-enriched glycoprotein extracts from Pompe and control iPSC-CMs. The glycosylated αDG (VIA4-1 and IIH6c4) to βDG band density ratios were the same in Pompe and control iPSC-CMs (Fig. 12, A and C), arguing against a deficit of αDG glycosylation. To confirm that glycosylated αDG in Pompe iPSC-CMs was functionally able to bind laminin, we performed a laminin overlay assay. Both control and Pompe iPSC-CMs exhibited comparable αDG-specific laminin binding (Fig. 12, B and C). In addition, following 2 days of culture in laminin-containing medium, both control and Pompe iPSC-CMs showed a dramatic increase in surface laminin fluorescence (Fig. 12, D and E). The co-localization of IIH6c4 and laminin fluorescence is in support of αDG-mediated laminin binding (53, 54).

Dystroglycan glycosylation and laminin binding in control and Pompe iPSC-CMs. A, immunoblots of glycoprotein from both control (C1 and C2) and Pompe (P1 and P2) iPSC-CMs probed with anti-αDG antibodies IIH6c4 and VIA4-1 that exclusively detect ...


This study establishes an iPSC-CM model of infantile-onset Pompe cardiomyopathy that manifests pathognomonic features: undetectable GAA activity and the presence of glycogen-filled lysosomes. Characterization of the Pompe iPSC-CMs did not reveal clear abnormalities in contractile function or the autophagic process. However, we unexpectedly found changes in the electrophoretic mobility of LAMPs in Pompe compared with controls iPSC-CMs. These changes were attributable to Golgi-based hypoglycosylation of the LAMPs, which typically include poly-N-acetyllactosamine and sialic acid. This study unmasks a previously unknown abnormality in protein processing in Pompe iPSC-CMs with features of hypoglycosylation similar to other congenital disorders of glycosylation (CDG) that also manifest hypertrophic cardiomyopathy (17, 55,57).

Patients with Pompe cardiomyopathy present with marked cardiac hypertrophy, which is occasionally diagnosed in utero. Echocardiography studies have demonstrated that systolic function is preserved despite profound hypertrophy for the first 5–6 months of life (2, 5), but diastolic function (relaxation) of the heart is impaired (58). By generating ECTs from iPSC-CMs, we sought to examine the early Pompe cardiomyopathy. Once we controlled for intrinsic rate by pacing all constructs at a fixed rate of 2.5 Hz for 1 week, no clear differences in contractile performance between the two control lines and two Pompe lines were observed. The fact that we did not find delayed relaxation in the Pompe ECTs as seen clinically may indicate that those changes are secondary to macroscopic remodeling of the heart rather than being intrinsic to the cardiomyocytes. The lack of significant contractile abnormalities suggests that contractile dysfunction is less likely to be the primary stimulus of the hypertrophic phenotype in Pompe cardiomyopathy.

Autophagic dysfunction has been recognized as an important feature in human Pompe skeletal myopathy (9). Elevation of the autophagosmal marker LC3-II in Pompe iPSC-CMs was not observed under standard culture conditions or after a CQ-induced autophagic challenge. The auxiliary markers of insufficient autophagy, p62 and conjugated ubiquitin, were also not elevated in Pompe iPSC-CMs. Thus, results from our model argue that autophagic dysfunction is not central to the early Pompe cardiomyopathy in humans. The Pompe mouse model also lacks autophagosomal accumulation in heart tissue (59) despite it being observed in skeletal muscle.

Abnormalities in glycosylation of LAMPs in Pompe iPSC-CMs were suggested by higher mobility LAMP species on immunoblots. In Western blots of Pompe mouse heart tissue, LAMP2 presented with higher mobility forms not detected in control hearts (60). Other CDGs have also been identified by variations in SDS complex mobility of LAMP2. For example, hypoglycosylated LAMP2 has been observed in Cohen syndrome, which is caused by mutations in a protein necessary for normal Golgi structure (61). In CDGs caused by mutations in the conserved oligomeric Golgi (COG) complex (62) or TMEM165 (63), loss of Golgi organization has been associated with LAMP2 hypoglycosylation.

Hyposialylation is a common, diagnostic feature of CDG (64,66). The LAMPs undergo extensive sialyation; 36.4 and 23.6 mol of sialic acid are added per mol of LAMP1 or LAMP2, respectively (38). The higher pI values and limited sialidase sensitivity of LAMP2 in Pompe iPSC-CMs compared with controls are consistent with a deficiency of sialic acid modification.

A key similarity among many of the CDGs is either a disruption of Golgi structure or the loss of a glycoprocessing protein activity (67, 68). In our work, we did not identify any obvious disruption in Golgi stack structure, nor does GAA have a known role in protein glycosylation. We speculated that a link between insufficient GAA activity and hypoglycosylation is secondary to the changes in glycogen metabolism. A recent publication using a mouse model of Pompe disease demonstrates dramatically increased activity of glycogen synthase concomitant with reduced glycogen phosphorylase activity, particularly in the heart (69). Because both glycogen synthesis and the nucleotide sugar synthesis pathways use UTP and glucose 6-phosphate as substrates, these reactants may be disproportionately consumed in glycogen synthesis, resulting in limited nucleotide sugar concentrations for Golgi glycotransferase reactions. Based on this reasoning, the ability for the acidotrope CQ to reverse the hypoglycosylation could arise from the neutralization of the cis-to-trans-Golgi pH gradient, thereby slowing transport of proteins through the Golgi (70) giving the LAMPs more time to be glycosylated in the environment of low substrate concentrations (40). Our finding that lysosomal sucrose accumulation had no effect on LAMP mobility in control iPSC-CMs is also supportive of glycogen accumulation being essential to the observed hypoglycosylation. In addition, Glycogen storage disease, GSD type 1b, has also been identified as a CDG (71), giving precedence to a relationship between abnormal glycogen metabolism in a glycogen storage disorder and deficits in Golgi glycosylation (72).

Limited nucleotide sugar concentrations in the Pompe iPSC-CM Golgi could also explain the mass spectrometry results. The enzymes N-acetylglucosaminyltransferase II, III, and V are required to make bi, bisecting bi-, and multiantennary N-linked glycans, respectively. The Km value for their common substrate, UDP-N-acetylglucosamine (GlnNAc), is 18 μm (73), 420 μm (74), and 4 mm (75) for N-acetylglucosaminyltransferase II, III, and V, respectively. Therefore, the equal presence of biantennary structures in Pompe and control iPSC-CMs, but limited bisecting biantennary and absent multiantennary structures in Pompe cells, may be caused by the increasing UDP-GlnNAc concentration dependence for the necessary N-acetylglucosaminyltransferase activity.

The tri and tetra-antennary structures are the preferred substrates for poly-N-acetyllactosamine extensions (76), which are abundant on the LAMPs. Previous pulse-chase experiments (38) demonstrate that the addition of lactosaminoglycans was responsible for an ≈25-kDa rise in LAMP molecular mass as a result of Golgi processing. Therefore, the 25-kDa molecular mass range for LAMPs from Pompe cells may be due to a variable lack of lactosaminoglycan extension. The absence of these extensions may originate from a deficiency in early glycan branching.

The fucosylated chitobiose trimannose glycan detected as a major peak in the Pompe mass spectra suggests that N-linked glycans are prepared for glycan branching and extension by an αManII/IIx-type glycosidase (46); however, these glycans do not experience further processing. There is debate as to whether the unmodified trimannose core can be produced by αManII/IIx (77). However, (Fuc)1(NacGln)2(Man)3 at m/z = 1345.6 has been observed in MALDI-TOF from other cells of mammalian origin (78). Whether the trimannose glycan is an indication of deficient complex glycan synthesis or a purposeful final product requires investigation.

Given the known pathology of hypoglycosylated αDG resulting in a loss of laminin binding in a subset of muscular dystrophies, which can have associated cardiomyopathies (79, 80), we examined the glycosylation of αDG specifically. We did not detect differences in αDG glycosylation or laminin binding between Pompe and control iPSC-CMs, suggesting that this specific glycosylation pathway is intact in Pompe disease and unlikely to be central to the pathophysiology.

CDGs are increasingly associated with the presence of a cardiomyopathy (17, 81). The mechanisms linking the variety of glycosylation deficits to cardiac pathology are poorly understood; however, several mechanisms merit future consideration. For example, the lack of sialylation of the sphingolipids on the cardiomyocyte plasma membrane has been shown to increase Ca2+ permeability (82, 83). Higher intracellular Ca2+ concentrations are a known trigger for hypertrophic signaling (84). Altered glycosylation of a variety of ion channel proteins expressed in the heart can change the functional properties of the channels (85,88). Thus, changes in key ionic currents could increase intracellular Ca2+ levels inducing pathological hypertrophy.

In conclusion, the iPSC-CM model of Pompe disease was used to identify a Golgi-based glycosylation deficit potentially central to Pompe cardiac pathophysiology, giving reason to pursue therapeutic avenues aimed at restoring normal glycoprocessing. Future studies will be needed to define how the loss of lysosomal glycogen degradation affects glycosylation and how glycosylation changes are related to the cardiomyopathy. Pompe iPS cell models will provide access to various human cell types relevant for further investigation of the disease and its treatment.


Monoclonal antibodies H4A3 and H4B4, developed by J. T. August and J. E. K. Hildreth, and monoclonal antibodies IIH6c4 and VIA4-1, developed by K. P. Campbell, were obtained from the Developmental Studies Hybridoma Bank created by the NICHD, National Institutes of Health, and maintained at the Department of Biology, University of Iowa, Iowa City. We also thank Ben August of the University of Wisconsin Medical School Electron Microscopy Facility for expert advice in processing and imaging tissue samples.

*This work was supported, in whole or in part, by National Institutes of Health Grant U01 HL099773 (to T. J. K. and J. A. T.) and by National Institutes of Health-funded Research Resource for Biomedical Glycomics (National Institutes of Health Grant P41GM10349010 to Parastoo Azadi at the Complex Carbohydrate Research Center).

An external file that holds a picture, illustration, etc.
Object name is sbox.jpgThis article contains supplemental Movie 1.

2The abbreviations used are:

acid α-glucosidase
induced pluripotent stem
induced pluripotent stem cell-derived cardiomyocyte
light chain 3
engineered cardiac tissue
brefeldin A
lysosome-associated membrane protein
wheat germ agglutinin
congenital disorder of glycosylation
cardiac isoform of troponin T
Developmental Studies Hybridoma Bank
isoelectric focusing
analysis of variance.


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