Search tips
Search criteria 


Curr Biol. 2013 August 19; 23(16): 1566–1573.
PMCID: PMC3752323

Spinal Projection Neurons Control Turning Behaviors in Zebrafish


Discrete populations of brainstem spinal projection neurons (SPNs) have been shown to exhibit behavior-specific responses during locomotion [1–9], suggesting that separate descending pathways, each dedicated to a specific behavior, control locomotion. In an alternative model, a large variety of motor outputs could be generated from different combinations of a small number of basic motor pathways. We examined this possibility by studying the precise role of ventromedially located hindbrain SPNs (vSPNs) in generating turning behaviors. We found that unilateral laser ablation of vSPNs reduces the tail deflection and cycle period specifically during the first undulation cycle of a swim bout, whereas later tail movements are unaffected. This holds true during phototaxic [10], optomotor [11], dark-flash-induced [12], and spontaneous turns [13], suggesting a universal role of these neurons in controlling turning behaviors. Importantly, we found that the ablation not only abolishes turns but also results in a dramatic increase in the number of forward swims, suggesting that these neurons transform forward swims into turns by introducing turning kinematics into a basic motor pattern of symmetric tail undulations. Finally, we show that vSPN activity is direction specific and graded by turning angle. Together, these results provide a clear example of how a specific motor pattern can be transformed into different behavioral events by the graded activation of a small set of SPNs.


Detailed Tail Kinematics of Turning and Forward Swims

To quantitatively induce turning behaviors of various amplitudes and tail beat frequencies, we identified three types of visual stimulation paradigms that are known to elicit robust and reliable responses: (1) a phototaxis-inducing illumination contrast consisting of uniform brightness on one side of the fish and darkness on the other, (2) an optomotor response (OMR)-inducing stimulus in which fish turn and swim to follow whole-field gratings moving in various directions, and (3) whole-field dark flashes that evoke large-angle turns. In the first two paradigms, the location and orientation of the visual stimulus were updated in real time such that visual input was spatially stable in the reference frame of the fish, regardless of the animal’s position and orientation (Figure 1A; see also Movie S1 available online). Swim kinematics such as the heading direction and the tail shape of larva were analyzed in real time at 500 frames/s (Figures 1B–1D and S1). In response to the phototaxic stimulus, larval zebrafish expressed two modes of behaviors: a forward swimming mode that exhibited little change in the heading direction (ΔΘH = 1.5°) that accompanied each swim, and a turning mode (ΔΘH = 38.9°) toward the illuminated side (Figure 1E). Although forward swims were associated with nearly no change in the final heading direction, the swims were consistently initiated by a head swing (ΔΘH1) toward the illuminated side, indicating a biased initiation of forward swims (Figure 1F, arrowhead). In order to examine more closely how forward swims differ from turns, we analyzed tail undulations in a cycle-by-cycle manner. During the first cycle, both tail deflection (Θ1) and cycle period (P1) exhibited a bimodal distribution (Figure 1G, left panel). The forward swimming mode corresponded to a smaller tail deflection and a shorter cycle period (58° and 41 ms), whereas the turning mode corresponded to a larger tail bend and longer cycle period (143° and 59 ms). Interestingly, the bimodal distribution disappeared in the second undulation cycle (Figure 1G, middle panel). Later undulations between turns and forward swims were virtually identical (Θ3 = 59° and P3 = 45 ms; Figure 1G, right panel). Similar results were obtained with whole-field motion as the turn-inducing stimulus (Figures 1H–1J). Thus, despite the apparent difference between forward swims and turns, the two motor programs differed only during the first undulation cycle and were nearly identical in later undulations. Table 1 summarizes the swim kinematics during phototaxis, the OMR, the dark-flash response, and spontaneous swimming.

Figure 1
Detailed Swim Kinematics during Phototaxis and the Optomotor Response
Table 1
Comparison of Turning Kinematics during Different Visual Environments

Laser Ablation of Hindbrain vSPNs Affects the First Cycle of Tail Undulations and Promotes Forward Swims

The ventromedially located spinal projection neurons (vSPNs) consist of three bilateral pairs of nuclei, namely RoV3, MiV1, and MiV2, that are located at the ventromedial part of the hindbrain reticular formation [11, 14, 15]. These neurons are marked by the zebrafish homolog of mammalian Chx10 and provide glutamatergic innervation to the ipsilateral side of the spinal cord [16]. A previous study showed that vSPNs are necessary for the performance of turning behaviors induced by whole-field visual motion during the OMR [11]. There are at least three possible mechanisms that would explain these results. First, the vSPNs themselves might be capable of eliciting biased tail undulations, and forward swims might be controlled by an independent set of SPNs. In this case, removal of the vSPNs should lead to the absence of turning events without affecting forward swims. Second, the vSPNs might control individual tail flicks toward the left and right but also induce forward swims by becoming active simultaneously [17]. In this case, ablation would lead to a decrease in the occurrence of forward swims. A third possibility is that the cells might serve to switch forward swims, controlled by independent descending pathways, to turns by introducing an asymmetry to tail movements within a given swim event. In this case, ablation of the neurons would also predict a removal of turns but would result in an increase in the rate of forward swims.

Here, we directly tested how hindbrain vSPNs modulate tail undulations during phototaxis, OMR, dark-flash response, and spontaneous swimming by ablating these neurons using a two-photon laser (Figures 2A–2C). We tested the behaviors of the same group of fish (n = 24) before and after ablation for all four visuomotor assays. Because the SPNs were labeled stochastically by spinal cord injections, the number of cells ablated and the consequent phenotype varied. However, we found that whenever one type of turn was abolished, the other three behaviors were also impaired. This indicates that these sensorimotor behaviors, which require the detection of spatial contrast, visual motion, and a temporal change in luminosity, use the same set of vSPNs in controlling turns.

Figure 2
Laser Ablation of vSPNs Specifically Affects the First Undulation Cycle and Promotes Forward Swims during Phototaxis and the OMR

In several cases (8 of 24 fish), where the ablation completely abolished turns toward the ablated side (Figure 2D, right panels), turns toward the contralateral side remained intact (Figure 2D, left panels). A cycle-by-cycle analysis of tail movements revealed that the fish still performed tail undulations after the ablation (Figure 2C, lower right traces). However, the first undulation cycle was severely affected by the ablation: the tail deflection and the cycle period dropped by 61% and 33%, respectively (Figure 2E). During the second undulation, the two parameters were reduced by only 6% and 2%. Later undulations were virtually unaffected by the ablation in terms of amplitude, period, and directional bias (Figure 2F). Similar ablation phenotypes were also observed in turning behaviors induced by visual motion (Figures 2H–2J). Overall, the ablation specifically abolished turning characteristics, namely large tail deflections and prolonged undulations, but spared the performance of symmetric tail undulations. These results show that vSPNs are not necessary for generating rhythmic tail undulations but instead might serve to transform a symmetric motor pattern into an asymmetric motion that underlies a turn. If this is true, removing the vSPNs should reveal the basic motor pattern of forward swims. This idea is supported by the observation that ablation not only abolished turns (phototaxis: from 34 ± 6.7 turns/min to 2.9 ± 2.1 turns/min, p = 0.001; OMR: from 34 ± 3.2 turns/min to 2.8 ± 1.5 turns/min, p = 0.000005) but also drastically increased the occurrence of forward swims (phototaxis: from 13 ± 3.8 swims/min to 31 ± 4.1 swims/min, p = 0.009; OMR: from 17 ± 5.2 swims/min to 49 ± 4.7 swims/min, p = 0.001; pooled data from the eight fish are shown in Figures 2D and 2H, arrowheads). The increase in the occurrence of forward swimming was striking, since we observed a general reduction in the overall swim frequency after the ablation (from 53 swims/min to 36 swims/min in phototaxis, and from 65 swims/min to 56 swims/min in OMR). Therefore, the increase in the probability of forward swims is likely due to the transformation of turns back into forward swims. Interestingly, the spared forward swims were initiated by tail bends toward either side of the body (Figures 2G and 2K, arrowheads), indicating that, unlike in vSPNs, the independent descending pathway that controls forward swims innervates both sides of the spinal circuitry. During the dark-flash response and spontaneous swimming, ablation of vSPN also impaired turns to the ablated side and drastically increased the occurrence of forward swimming (Figure S2). Together, these ablation experiments show that vSPNs have a universal role in controlling visually induced and spontaneous turns, and that they control turning behaviors by increasing the tail deflection and the cycle period during the first undulation cycle of tail movements.

Activity of vSPNs during Turns of Different Amplitude

The vigor of motor output can be controlled by the graded activity of the same set of neurons [18], or by selective activation of different subsets of neuronal populations [19, 20]. We next set out to test how vSPNs encode a wide range of turn angles by correlating the calcium fluorescence of vSPNs with the turning strength of fictive swims (Figures 3A and 3B). In the fictive swimming paradigm [21, 22], the periodic bursting of peripheral motor nerves is recorded as a proxy for intended swims of the fish. These bursts occur every ~40 ms for three to six repetitions with left-right alternations (Figure 3C), reminiscent of tail undulations during free swimming. The turning direction and strength were estimated by comparing the power difference between left and right motor nerve signals (see Supplemental Experimental Procedures). Using gratings moving in different directions, we elicited fictive swims covering a wide spectrum of turning angles (Figure S3). We examined 204 vSPNs from 20 fish and found that 159 neurons were active during fictive swims (29 of 37 cells in RoV3, 83 of 104 cells in MiV1, and 47 of 63 cells in MiV2). By correlating an individual neuron’s calcium activity to the intended swimming direction of the fish, we found that the majority of these vSPNs exhibited an activation profile of a rectifying or sigmoidal shape; they were silent during turns toward the contralateral side and weakly active during forward swims, and their activity progressively increased with the turning strength to the ipsilateral side (see Figure 3D for an example neuron). We quantified this observation by using the index of directional bias (IDB), which is the difference between responses of the cell during ipsilateral and contralateral turns (Figure 3F). We found two functional groups within the vSPNs. The first group, which consisted of 76% of the vSPNs, showed a strong directional bias for ipsilateral turns. This group included all responsive RoV3 and MiV2 neurons (n = 29 and 47 cells, respectively) and 54% of the MiV1 neurons (45 of 83 cells). The other functional group exhibited only a weak directional bias for ipsilateral turns and was found exclusively in the MiV1 nucleus (Figure 3F). The MiV1 neurons with a weak directional bias tended to be active during all swimming directions, and a few of them (11 of 83 cells) had elevated activity during weak ipsilateral turns (see Figure S4A for example). Thus, the overall population response differed among the three nuclei: RoV3 and MiV2 nuclei showed a clear sigmoidal or rectifying profile in their activation during swims, whereas the MiV1 nucleus was active during all directions, with a weak directional bias for ipsilateral turns (Figure 3E). We did not observe a continuous shift in the subset of vSPNs tuned for specific turning angles, suggesting that the strength of turns is not controlled by recruiting different subsets of neurons. Instead, the rectifying shape of the activation profile of most of these neurons makes it likely that the strength of turns is controlled by the same set of vSPNs in an activity-dependent manner.

Figure 3
vSPNs Show Graded Responses with Respect to Turn Angle and Show Correlated Activity for Visually Evoked and Spontaneously Occurring Swim Events

The ablation experiments show that whenever a vSPN ablation leads to impairment in visually induced turns, spontaneous turns are also impaired. This suggests that the same subset of vSPNs is used to control both visually induced and spontaneous turns. Here, we directly examined whether neurons that are active during the OMR are also recruited during spontaneous swims by monitoring the calcium fluorescence of individual neurons (see Figure 3G for an example neuron). This can only be done by simultaneously recording motor nerve signals, because there is no visual stimulus to determine the onset of motor events during spontaneous swims. We found a high degree of overlap between neurons that were active during the visually evoked and spontaneously occurring swims. More than 69% of the responsive vSPNs were active in both behaviors (Figure 3H, red cells).


To study how SPNs in the brainstem generate descending motor commands, we compared detailed kinematics between forward swims and turns, and we found that the two apparently distinct motor outputs differed only during the first undulation of tail movements. Removal of a discrete subset of ventromedial hindbrain SPNs, namely RoV3, MiV1, and MiV2 neurons, specifically abolished turning kinematics during the first undulation cycle, while symmetric tail undulations throughout the swim were spared. This cycle-specific modulation of behaviors by the vSPNs occurred during various types of visually elicited turns as well as during spontaneous locomotion. The activation profile of the vSPNs further supports the notion that these neurons encode turning angles of different sizes via a change in their activity levels.

Modular Design of Descending Motor Control

Turn-controlling SPNs can generate biased swims in one of two ways: they can either (1) generate a template for a complete waveform of tail movements that exhibit directional bias or (2) modulate an independently generated symmetric motor output such that the combined output is a biased tail movement. Our results support the latter scenario. First, turns and forward swims differed only in the first undulation cycle, suggesting that a moderate modulation is sufficient to transform one behavior to the other. Second, symmetric tail undulations were spared after the ablation of vSPNs, indicating that the neurons do not serve to generate rhythmic body movements. Third, the probability of forward swims dramatically increased after the ablation of vSPNs, strongly suggesting that turns are transformed to forward swims in the absence of vSPNs. Together, these observations suggest that turning behaviors are generated by a concerted action of two groups of SPNs: one that generates symmetric, rhythmic body movements that result in a forward swim, and another, mediated by vSPNs, that introduces a biased, prolonged tail deflection during the first cycle of tail movements. The SPNs that elicit forward swims are currently unknown. However, neurons that are active during visually elicited forward swims are potential candidates. In larval zebrafish, these SPNs are present in various locations, including the nucleus of the medial longitudinal fasciculus (nucMLF) in the midbrain, the RoL1 nucleus in the hindbrain, and identified hindbrain neurons such as RoR1 and RoM1c [11]. The concerted action of SPNs in generating behaviors is reminiscent of modular designs. A modular system can be subdivided into smaller parts (modules) that are responsible for discrete functions. Each module is independent, and thus the deletion of one module will not affect the operation of others. Furthermore, different combinations of modules allow the system to express different functions. Here, we show that removing vSPNs spares the expression of symmetric tail undulations. Previous studies also showed that removing Mauthner cells and their homologs, while drastically increasing the response delay of escape turns, spared the expression of a wide spectrum of turning angles [6, 9]. It appears that different populations of SPNs specifically control different aspects of locomotor behaviors, and combined activations of these populations would generate various types of behaviors. For example, activation of vSPNs during symmetric tail undulations would result in turning behaviors, and an additional activation of the Mauthner neuron and its homologs would further shorten the response delay and result in high-performance escape turns. The function of the rest of the SPNs remains to be identified, but it is likely that they serve to introduce additional properties into the locomotor repertoire.

Potential Modulation of Spinal Central Pattern Generators by vSPNs

The vSPNs provide descending excitation to the ipsilateral side of the spinal network [14–16]. Our ablation experiments show that vSPNs serve to increase the tail deflection and the cycle period during the first cycle of tail undulations. To increase tail deflections, vSPNs may simply innervate spinal motor neurons on the ipsilateral side. Controlling the undulation frequency, however, may involve more intricate regulation of the central pattern generator (CPG) network, since a prolonged tail bend requires an extended inhibition to the contralateral side of the spinal circuitry. Indeed, several lines of evidence obtained in lampreys suggest that one of the roles of commissural inhibition is to slow down the rhythm of the spinal network [23, 24]. In larval zebrafish, several commissural interneuron subtypes have been identified [25–27] that might serve as putative targets for descending vSPNs, and their modulation might explain the specific frequency changes that occur when a forward swim gets switched into a turn. Clearly, further experiments to describe the specific connectivity between SPNs and spinal neurons, and the combination of anatomical data with modeling studies, are needed to resolve these issues.

In summary, we have provided a clear example of how a specific locomotor behavior can be switched into a distinctly different behavioral event by the activation of a small set of SPNs. These SPNs generate new behaviors by introducing alternate kinematics into a basic motor pattern, such as transforming forward swims into turns. The independent control of turning kinematics and symmetric undulations suggests that a modular design is used in the central brain to construct descending motor commands that are sent into the spinal cord to generate behavior.


All animal handling and experimental procedures were approved by the Harvard University Standing Committee on the Use of Animals in Research and Training. We thank Kristen Severi, Ruben Portugues, and other members of the Engert lab for helpful discussions. This work was supported by grants from the National Institutes of Health (K.-H.H., T.W.D., and F.E.) and by a Sir Henry Wellcome Postdoctoral Fellowship from the Wellcome Trust (M.B.A.).


Published: August 1, 2013


This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Supplemental Information includes four figures, Supplemental Experimental Procedures, and one movie and can be found with this article online at

Supplemental Information

Document S1. Figures S1–S4 and Supplemental Experimental Procedures:
Movie S1. Phototaxis Assay and Analysis of Swim Kinematics, Related to Figure 1:

A freely swimming larval zebrafish is exposed to a visual stimulus that is dark on the right side and bright on the left side. The stimulus is locked to the location and orientation of the fish. The consistent turns of the animal toward the bright side are apparent. Movie is shown in real time. The second part of the movie illustrates the details of the tracking algorithm; this section is slowed down 20×.


1. Deliagina T.G., Beloozerova I.N., Zelenin P.V., Orlovsky G.N. Spinal and supraspinal postural networks. Brain Res. Rev. 2008;57:212–221. [PubMed]
2. Deliagina T.G., Zelenin P.V., Fagerstedt P., Grillner S., Orlovsky G.N. Activity of reticulospinal neurons during locomotion in the freely behaving lamprey. J. Neurophysiol. 2000;83:853–863. [PubMed]
3. Fagerstedt P., Orlovsky G.N., Deliagina T.G., Grillner S., Ullén F. Lateral turns in the Lamprey. II. Activity of reticulospinal neurons during the generation of fictive turns. J. Neurophysiol. 2001;86:2257–2265. [PubMed]
4. Grillner S., Wallén P., Saitoh K., Kozlov A., Robertson B. Neural bases of goal-directed locomotion in vertebrates—an overview. Brain Res. Rev. 2008;57:2–12. [PubMed]
5. Zelenin P.V. Activity of individual reticulospinal neurons during different forms of locomotion in the lamprey. Eur. J. Neurosci. 2005;22:2271–2282. [PubMed]
6. DiDomenico R., Nissanov J., Eaton R.C. Lateralization and adaptation of a continuously variable behavior following lesions of a reticulospinal command neuron. Brain Res. 1988;473:15–28. [PubMed]
7. Nissanov J., Eaton R.C., DiDomenico R. The motor output of the Mauthner cell, a reticulospinal command neuron. Brain Res. 1990;517:88–98. [PubMed]
8. O’Malley D.M., Kao Y.H., Fetcho J.R. Imaging the functional organization of zebrafish hindbrain segments during escape behaviors. Neuron. 1996;17:1145–1155. [PubMed]
9. Liu K.S., Fetcho J.R. Laser ablations reveal functional relationships of segmental hindbrain neurons in zebrafish. Neuron. 1999;23:325–335. [PubMed]
10. Burgess H.A., Schoch H., Granato M. Distinct retinal pathways drive spatial orientation behaviors in zebrafish navigation. Curr. Biol. 2010;20:381–386. [PubMed]
11. Orger M.B., Kampff A.R., Severi K.E., Bollmann J.H., Engert F. Control of visually guided behavior by distinct populations of spinal projection neurons. Nat. Neurosci. 2008;11:327–333. [PubMed]
12. Burgess H.A., Granato M. Modulation of locomotor activity in larval zebrafish during light adaptation. J. Exp. Biol. 2007;210:2526–2539. [PubMed]
13. Budick S.A., O’Malley D.M. Locomotor repertoire of the larval zebrafish: swimming, turning and prey capture. J. Exp. Biol. 2000;203:2565–2579. [PubMed]
14. Kimmel C.B., Powell S.L., Metcalfe W.K. Brain neurons which project to the spinal cord in young larvae of the zebrafish. J. Comp. Neurol. 1982;205:112–127. [PubMed]
15. Metcalfe W.K., Mendelson B., Kimmel C.B. Segmental homologies among reticulospinal neurons in the hindbrain of the zebrafish larva. J. Comp. Neurol. 1986;251:147–159. [PubMed]
16. Kimura Y., Satou C., Fujioka S., Shoji W., Umeda K., Ishizuka T., Yawo H., Higashijima S. Hindbrain V2a neurons in the excitation of spinal locomotor circuits during zebrafish swimming. Curr. Biol. 2013;23:843–849. [PubMed]
17. Zelenin P.V., Grillner S., Orlovsky G.N., Deliagina T.G. Heterogeneity of the population of command neurons in the lamprey. J. Neurosci. 2001;21:7793–7803. [PubMed]
18. Bhatt D.H., McLean D.L., Hale M.E., Fetcho J.R. Grading movement strength by changes in firing intensity versus recruitment of spinal interneurons. Neuron. 2007;53:91–102. [PubMed]
19. McLean D.L., Fan J., Higashijima S., Hale M.E., Fetcho J.R. A topographic map of recruitment in spinal cord. Nature. 2007;446:71–75. [PubMed]
20. McLean D.L., Masino M.A., Koh I.Y.Y., Lindquist W.B., Fetcho J.R. Continuous shifts in the active set of spinal interneurons during changes in locomotor speed. Nat. Neurosci. 2008;11:1419–1429. [PubMed]
21. Ahrens M.B., Li J.M., Orger M.B., Robson D.N., Schier A.F., Engert F., Portugues R. Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature. 2012;485:471–477. [PubMed]
22. Masino M.A., Fetcho J.R. Fictive swimming motor patterns in wild type and mutant larval zebrafish. J. Neurophysiol. 2005;93:3177–3188. [PubMed]
23. Hagevik A., McClellan A.D. Coupling of spinal locomotor networks in larval lamprey revealed by receptor blockers for inhibitory amino acids: neurophysiology and computer modeling. J. Neurophysiol. 1994;72:1810–1829. [PubMed]
24. Cangiano L., Grillner S. Fast and slow locomotor burst generation in the hemispinal cord of the lamprey. J. Neurophysiol. 2003;89:2931–2942. [PubMed]
25. Hale M.E., Ritter D.A., Fetcho J.R. A confocal study of spinal interneurons in living larval zebrafish. J. Comp. Neurol. 2001;437:1–16. [PubMed]
26. Higashijima S., Schaefer M., Fetcho J.R. Neurotransmitter properties of spinal interneurons in embryonic and larval zebrafish. J. Comp. Neurol. 2004;480:19–37. [PubMed]
27. Higashijima S., Mandel G., Fetcho J.R. Distribution of prospective glutamatergic, glycinergic, and GABAergic neurons in embryonic and larval zebrafish. J. Comp. Neurol. 2004;480:1–18. [PubMed]