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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
 
Genet Med. Author manuscript; available in PMC 2013 July 25.
Published in final edited form as:
Published online 2012 February 23. doi:  10.1038/gim.2012.15
PMCID: PMC3723451
NIHMSID: NIHMS488325

Return of Individual Research Results from Genome-wide Association Studies: Experience of the Electronic Medical Records & Genomics (eMERGE) Network

Abstract

Purpose

Return of individual genetic results to research participants, including participants in archives and biorepositories, is receiving increased attention. However, few groups have deliberated on specific results or weighed deliberations against relevant local contextual factors.

Methods

The Electronic Medical Records and GEnomics (eMERGE) network, which includes five biorepositories conducting genome-wide association studies, convened a Return of Results Oversight Committee (RROC) to identify potentially returnable results. Network-wide deliberations were then brought to local constituencies for final decision-making.

Results

Defining results that should be considered for return required input from clinicians with relevant expertise and much deliberation. The RROC identified two sex chromosomal anomalies, Klinefelter Syndrome and Turner Syndrome, as well as homozygosity for Factor V Leiden, as findings that could warrant reporting. Views about returning HFE gene mutations associated with hemochromatosis were mixed due to low penetrance. Review of EMRs suggested that most participants with detected abnormalities were unaware of these findings. Local considerations relevant to return varied and, to date, four sites have elected not to return findings (return was not possible at one site).

Conclusion

The eMERGE experience reveals the complexity of return of results decision-making and provides a potential deliberative model for adoption in other collaborative contexts.

Keywords: Result return, biorepository, electronic medical records, deliberation, context

INTRODUCTION

The return of individual results from genetic research has been widely debated and discussed. There has, however, been less detailed consideration about the ways in which relevant ethical and logistical considerations change when research involves genome-wide association study (GWAS) or related whole genome approaches, particularly as carried out in the context of large multi-site research collaborations. One collaboration that has been actively grappling with the issue of individual result return is the Electronic Medical Records and Genomics (eMERGE) Network, a consortium of five institutions and two genotyping centers conducting GWAS using phenotypes derived from Electronic Medical Records (EMRs).13

From its inception the eMERGE Network incorporated active consideration of the Ethical, Legal, and Social Implications (ELSI) of the research, via the coordinated efforts of a Consent and Community Consultation (CCC) workgroup.4 A CCC Return of Results sub-group recommended that the Network establish a standing Return of Results Oversight Committee (RROC) to deliberate about specific classes of findings likely to be generated by eMERGE research activities. The RROC met to consider such findings and made general recommendations to the Network, which then formed the basis for local discussion and decision-making.

Here we describe the types of findings discussed by the eMERGE RROC, the conclusions of our deliberations to date, and the ways in which specific recommendations were taken up and acted on by individual network partners. Our experience demonstrates how complicated in practice decision-making with respect to the return of individual research findings generated from whole genome approaches is likely to be, and suggests a general process that other multi-institutional genomics consortia might adopt in the future.

eMERGE RETURN OF RESULTS OVERSIGHT COMMITTEE

The active involvement of researchers with expertise in the ELSI of genomic research at all five eMERGE institutions provided an important opportunity to revisit the contours of the return of results debate in the context of biorepository-based GWAS and related genome scale approaches. At the recommendation of the Network Steering Committee, a CCC Return of Results sub-group was convened in 2008 and the group met to review bioethics scholarship, policy discussion, and empirical reports of participant preferences and researcher experience with result return. A detailed literature review revealed a body of empirical data suggesting that many research participants say they would like to receive individual results from studies in which they participate; however the degree to which there is an ethical duty to return such findings is actively debated.58

Based on this review, emerging national policy consensus,911 preliminary experience with result deliberation in related contexts,12,13 and internal debate and discussion, the CCC formally recommended the establishment of a network-wide RROC to deliberate on specific classes of findings and advise participating sites on the return of individual research results, whether generated by the primary research objectives or incidentally. To further specify the scope of the work of the RROC, the sub-group recommended limiting return only to clinically actionable findings (i.e., with potential to change immediate medical care), which the CCC agreed was the appropriate threshold for eMERGE given its use of pre-existing population-based cohorts with variable consent restrictions. Given this emphasis, and under the expectation that deliberations would focus on defining the likely clinical actionability of specific classes of candidate findings, the sub-group also recommended that the RROC be composed of at least two representatives from each site: one with bioethics/policy background and one with clinical expertise. Representation from the Broad Institute and Center for Inherited Disease Research genotyping centers, as well as the NHGRI, was also encouraged. Finally, the CCC suggested that any recommendations made by the RROC were to be advisory, not binding, and subject to local IRB oversight and approval. This was particularly important given the fact that only one of the five cohorts (Mayo) had suggested the possibility of individual result return at the time of informed consent.

The eMERGE Steering Committee formed the RROC as recommended in December 2009, and affirmed clinical actionability as the criterion for considering result return. At the first meeting of the RROC, a Chair (GPJ) was elected and the group began meeting monthly by telephone (through December 2010) to identify relevant findings and determine their likely clinical actionability. Because none of the initial genetic associations investigated by the Network were deemed relevant to clinical care, discussion focused first on several classes of incidental findings generated by genotyping quality control, viz. sex chromosomal anomalies uncovered in the course of sex checks designed to guard against inadvertent sample mix-ups. Next the RROC turned its attention to potentially actionable individual SNPs typed on the genotyping arrays used. Identification of such SNPs was guided by a published survey of the SNPs found on major genotyping platforms that are also used as clinical tests.14 The clinical members of the RROC identified homozygosity of SNP rs6025 (R506Q, associated with Factor V Leiden) and rs1800562 (HFE C282Y, associated with hereditary hemochromatosis) as of the highest clinical relevance. The FVL-associated SNP was present only on the Illumina Infinium 1M chip used to genotype the predominantly African-American samples. This SNP was not on the 660W chip used to type most eMERGE samples. Future discussion of pharmacogenetic SNPs, imputed genotypes, and copy number variants is anticipated as part of the work of the next phase of the eMERGE collaboration.

SPECIFIC FINDINGS CONSIDERED BY THE OVERSIGHT COMMITTEE

RROC deliberations focused on genotypes associated with four diseases: Turner Syndrome, Klinefelter Syndrome, Factor V Leiden (FVL), and HFE mutations associated with hereditary hemochromatosis. Medical considerations relevant to decision-making about the permissibility of return are summarized in Table 1.

Table 1
Potentially Returnable Findings Discussed by the eMERGE Return of Results Oversight Committee (RROC)

Sex Chromosome Anomalies (Turner and Klinefelter Syndromes)

In clinical care, any chromosome abnormality diagnosed would typically be returned to a clinician and patient, even if the finding was incidental. For example, cytogenetic laboratories performing metaphase chromosome analysis for suspected acquired chromosome abnormalities may identify previously unrecognized constitutional sex chromosome abnormalities or acquired sex chromosome abnormalities associated with disease.15 The rationale for returning such findings is to provide patients with the opportunity for appropriate medical management. Therefore, karyotypes not requiring medical management, such as XXX (4 examples of which were observed in our samples) and XYY (1 observed) were not considered returnable. The standard of care for both Turner and Klinefelter Syndromes involves hormone treatment and specific, syndrome-related medical screening (Table 1). For this reason, the RROC determined that chromosome anomalies associated with these disorders merited consideration for return.

When a research study includes linkage to medical records – as with the eMERGE study – evidence of a prior diagnosis can be sought; while the EMR may be incomplete, a return of the results would not be needed if there is clear documentation of the disorder. In addition, care in interpreting GWAS data is required when sex chromosome loss is detected, particularly in older research participants, because acquired (e.g., non-constitutional) loss occurs more commonly in older individuals.16 This is of particular importance when considering whether an older female with loss of X chromosome, particularly when mosaic, has an acquired anomaly or constitutive Turner syndrome.

Factor V Leiden

FVL results from a mutation of the Factor V gene, rs6025, which causes an amino acid substitution (R506Q). This results in a hypercoaguable state due to activated protein C resistance. Clinically this manifests as an increased risk of venous thromboembolism (VTE), including deep vein thrombosis (DVT) and pulmonary embolism (Table 1). Although the polymorphism is relatively frequent in European-Americans (allele frequency = 0.05), the clinical actionability of a heterozygote genotype is unclear.17 Heterozygotes have a 3 to 7-fold higher than average risk of a first DVT. However the absolute risk for heterozygotes is low (about 10% lifetime risk of DVT) and their risk for a recurrent DVT is only slightly above that of DVT patients without the FVL allele. Homozygotes, in contrast, have a high lifetime risk of DVT and are likely to require treatment.18

RROC discussions attempted to balance the risk of creating “worried well” individuals among those still unlikely to develop symptoms with preventable VTEs, and the possible benefits of disclosure. There is currently no evidence that routine FVL genotyping would change DVT risk,19 although counseling against smoking, particularly if the person is also using hormones, could theoretically reduce risk. Although some RROC members felt there is clinical value in returning a heterozygous genotype, the group ultimately agreed that such a finding would not necessitate any immediate change to medical care, and thus that it should not be included on the eMERGE list of conditions to consider returning. On the other hand, the group agreed that homozygosity for FVL should be considered for return to participants.

HFE mutations associated with Hemochromatosis

Hemochromatosis results most often from the inheritance of two copies of the HFE mutation C282Y. This genotype is associated with increased iron absorption and a risk of deposition of iron in body tissues, including the liver, heart, skin, joints, and pancreas (Table 1). Clinical complications include cirrhosis and hepatocellular carcinoma, cardiomyopathy, diabetes, and hypogonadism. Periodic phlebotomy can prevent or reverse iron overload. Other pathologic mutations in the HFE gene have also been described and one, H63D, is associated with increased iron absorption as well; however, its penetrance is significantly lower than that of C282Y.20

A minority of people with the C282Y/C282Y genotype develop clinical disease; even among those with elevated serum iron measures, few develop complications. For example, cirrhosis is seen only among those with serum ferritin levels >1000 ng/ml (the normal upper limit is 300ng/ml for men and 150 ng/ml for women), and the likelihood of people with C282Y/C282Y developing cirrhosis is estimated to be 10% or lower for men, and less than 1% for women.21 However, the low penetrance must be weighed against the fact that prevention of symptomatic disease is reasonably easily achieved by periodic phlebotomy and, for the predominantly male patients who develop symptomatic disease, treatment options are limited.

In its consideration of hemochromatosis the RROC noted that expert committees have not found that population screening is warranted for this disease.22 However, a different calculus may apply when genotypes are already available. The clinical members of the committee also noted that adult family members of affected individuals are routinely screened for HFE alleles. Those who are found to be homozygous for the C282Y mutation undergo regular monitoring of their ferritin levels. Given the markedly lower expected penetrance of the homozygous genotype in females in published population-based studies, most members of the RROC supported return of these results to males. Of 58 individuals (33 male) identified in eMERGE as C282Y homozygotes whose medical records were evaluated, 13 (8 male) had existing diagnoses of hemochromatosis documented in the EMR. Thus, as not all diagnoses may be identified in the EMR, a minimum of 24% of males and 13% of females who were homozygotes were diagnosed at the current ages of these participants.

LOCAL DELIBERATIONS SURROUNDING POTENTIALLY RETURNABLE FINDINGS

Three of the four classes of research findings discussed by the RROC were encountered in the course of eMERGE research activities; the FVL SNP was either not assayed or genotype status was not reviewed (Table 2). At each site, EMR data were reviewed for those participants affected by the relevant genotypes. This review suggested that most participants with these findings were likely unaware of their genotype (Table 2). Local decision-making regarding the necessity and/or desirability of result return differed across sites. One site (Vanderbilt) is a de-identified biobank and thus cannot return individual results. The other four sites considered the RROC recommendations in light of their original consent, as well as local advisory groups and IRB concerns. Details of local deliberations are outlined briefly below.

Table 2
Number of Participants Affected by Potentially Returnable Genotypes at each eMERGE Site.

Group Health Cooperative

2358 Adult Changes in Thought study23 participants (42% male) were genotyped by Group Health/University of Washington eMERGE investigators. Of these, seventeen participants’ results were relevant to disorders discussed by the RROC (Table 2): four consistent with XX/XO mosaicism (none with a Turners diagnosis in the EMR), one consistent with XXY (deceased, no EMR diagnosis), and 12 HFE C282Y homozygotes. As hemochromatosis-related iron overload typically manifests earlier, HFE genotypes were unlikely to be clinically actionable for these participants, whose median age is 74 years, and hence these genotypes were not initially reviewed. However, when diagnoses rates in HFE C282Y homozygotes for other sites was higher than expected, genotypes were reviewed and 12 homozygotes (3 male; 9 deceased) were identified; one of these 3 males was documented to have hemochromatosis.

Local deliberation occurred at two levels: generically, as part of a consensus development discussion focused on genomic research conducted in the Group Health setting, and more specifically among the investigator team and the lead clinical geneticist at Group Health. The consensus development group ratified a careful approach in which only clinically actionable results would be returned to participants. Local investigators and the lead Group Health geneticist favored return of Turner and Klinefelter results, based on the RROC recommendation and clinical experience. The Group Health geneticist (KAL) had experience with the routine return of the incidental sex chromosomal anomalies to patients who have undergone bone marrow studies, in which patient responses suggest the benefits outweigh the harms. However, for this cohort the only XXY subject was deceased. Discussion of the return of the Turner Syndrome finding emphasized the fact that the four potentially affected women were of an advanced age, hence unlikely to have their care affected by the finding, and that their mosaic X monosomy might be acquired. The women in question had no indications in their medical records of symptoms consistent with Turner syndrome, such as short stature or infertility. Therefore it was decided that return was not indicated due to the likelihood that these were not constitutional changes.

Marshfield Clinic

The Marshfield Clinic site genotyped and analyzed the phenotypes of 4108 members of its Personalized Medicine Research Project (PMRP; 42% male).24 Of these, nineteen were identified relevant to diagnoses discussed by the RROC (Table 2): three consistent with XX/XO (none documented in the EMR, although 2 had documented infertility), one consistent with XXY (no Klinefelter diagnosis, but small testes documented in the EMR) and a second with XXY/XY (Klinefelter documented in the EMR), and fourteen (six male) HFE C282Y homozygotes, five previously documented with hemochromatosis (3 male).

Local deliberations focused on features of the study sample, the initial terms of informed consent, and review with the PMRP Community Advisory Group (CAG). For participants with possible Turner findings, the subjects’ ages suggested clinical care would not be improved by result return. Age was a less salient consideration for those with suspect HFE genotypes and the Marshfield Clinic IRB approved a separate study to examine the medical records of HFE C282Y homozygotes for clinical signs and symptoms consistent with iron overload. This review revealed no symptoms suggestive of hemochromatosis among those without an EMR documented diagnosis. These findings were shared with the CAG, together with the, then current, NHLBI Guidelines for returning genetic results9, the governing consent language suggesting no results would be returned, and the guidelines from the Marshfield Clinic IRB. The CAG concurred with the investigators’ decision not to return HFE results. Barriers to returning genetic results that were considered in local discussions included the need to re-consent to allow result return and the logistics of how to return, including the need for genetic counseling and decision support for physicians.

Mayo Clinic

Mayo Clinic genotyped 3346 patients (62% male) for eMERGE GWAS analyses. Of these, nineteen were identified as relevant (Table 2): none consistent with Turner syndrome, five with findings consistent with XXY (one previously documented in the EMR) and fourteen (seven male) HFE C282Y homozygotes, including 5 (3 male) previously documented as having hemochromatosis.

The informed consent language in both the Mayo Clinic Biobank and the cardiovascular disease studies that were included in eMERGE allows for the return of individual research findings. Local deliberations at the Mayo Clinic focused on the potential return of Klinefelter syndrome findings (to date no decisions have been made about the return of HFE findings). In these local discussions opinions were mixed, with an adult endocrinologist suggesting that the clinical benefits of hormone replacement therapy would argue in favor of return, while a psychiatric consultant urged great caution in considering return by investigators in light of the unknown potential consequences for each individual, and envisioned scenarios of both benefit and harm to participants, depending on individual circumstances. One eMERGE investigator was also concerned about possible discovery of non-paternity, should an affected man with children learn that his genotype generally was associated with infertility. In the wake of these discussion, the Mayo Clinic eMERGE team elected not to return this information to relevant participants. These initial internal eMERGE deliberations did provoke broader institutional discussion about return of results management, which has included the Mayo Clinic Biobank Community Advisory Board, the IRB, and other groups within Mayo.

Northwestern University

1931 participants from the NUgene biorepository at Northwestern University25 (43% male) were genotyped for the eMERGE study. Six relevant individuals were reviewed. One identified as XXXY had a documented Klinefelter diagnosis. No results suggesting Turner Syndrome were found. A total of six (5 male) individuals were identified as HFE C282Y homozygotes, including 2 (1 male) previously documented) (Table 2).

Local deliberation focused on all four classes of findings discussed by the RROC, as well as the 2006 NHLBI recommendations with respect to the return of individual research findings.9 Discussions were held with NUgene researchers and internal eMERGE investigators, local genetic counselors, the IRB chair who reviews NUgene applications, a hepatologist who treats patients with hemochromatosis, and the NUgene Community Advisory Committee (CAC). A number of relevant concerns were raised in the course of these deliberations, including the fact that the current NUgene consent states that no results will be returned to research participants, NUgene has minimal on-going relationship with participants, and that return would raise a number of resource-related and logistical concerns. The varying opinions expressed during these deliberations led eMERGE investigators at Northwestern to decide to return these (and yet to be deliberated) results in the context of a study in which participants are re-consented for result return, as well as to investigate the meaning of clinically actionable results to patients and physicians. Changes to the NUgene consent form, to allow for limited return of information, as per the RROC criteria outlined above, are currently being discussed with relevant stakeholders, including the IRB and CAC.

Vanderbilt University

Vanderbilt University used for eMERGE its resource, BioVU,26 which combines irreversibly de-identified clinical information from the electronic medical record and residual blood samples. Patients are given the opportunity to opt out of this databank; results cannot be returned so the topic is not addressed. A total of 5172 participants (40% male) were genotyped. Of these, a total of eighteen individuals were identified as relevant (Table 2): four with possible Turner Syndrome findings (1 X0, 1 XXq−, and 2 XX/XO) (of which the XO and XXq− were previously documented), two consistent with XXY (1 previously documented with Klinefelter and the second with a record of treatment for testosterone deficiency), and twelve (six male) HFE C282Y homozygotes (none of whom had prior documentation or EMR evidence of symptomatic hemochromatosis).

The inability to communicate individual research results in studies that use BioVU has been discussed repeatedly by the Medical Center Ethics Committee and BioVU’s Community and External Ethics Advisory Boards. These groups consider this characteristic of the BioVU model to be reasonable. Vanderbilt has chosen to focus on evidence-based use of genetic testing in the clinical setting, using computer-based point-of-care decision support directed at current clinical questions.

DISCUSSION

The consortium convened a Return of Results Oversight Committee to consider which eMERGE GWAS results might qualify as clinically actionable and therefore suitable to consider for return to individual participants. In this process, consideration of specific examples of results generated by network research activities helped to clarify salient issues. The committee found that whereas most findings generated from GWAS do not meet criteria for return based on clinical actionability, some may.

Unlike many forms of genomic research, the eMERGE investigators had the benefit of access to EMR information. This proved to be an important factor in decision-making about specific instances of result return. In some cases, the EMR demonstrated that the clinically actionable result was already known. In other cases, health records shed light on ambiguous findings, increasing the likelihood that some findings represented acquired rather than congenital genetic changes. Decision-making will likely be more complicated where there are little reliable data on whether participants are already aware of their genetic status. While having access to EMR information was, in our experience, advantageous, we do not feel it would be appropriate to discount potential result return in the absence of such information, nor do we mean to suggest that routine access to EMR data is a prerequisite for studies that might contemplate the return of individual research findings.

Access to EMR information is only one of several aspects relevant to the return of individual research results. The informed consent process for genomic and biobank-based research often varies and may or may not have included reference to the possibility that results might be returned. For example, in the eMERGE consortium only one of the five cohorts (Mayo) had suggested the possibility of individual result return at the time of informed consent. This circumstance leads to a potential conundrum if a clinically actionable result is identified but participants were told in the informed consent process that they would not receive results. In the eMERGE CCC deliberations, the need for protection of a participant’s right to refuse results was identified; however, it was also recognized that a sufficiently compelling result (i.e. one for which an investigator might reasonably conclude that risks of nondisclosure outweigh disclosure) could merit consideration as a returnable result, even if the offer of results was not anticipated at the time of consent to participate. Appropriate procedures, including robust consideration of the type of result that would meet such a standard, would need to be determined locally, in consultation with the Institutional Review Board.

Another study-specific feature that has important implications for the issue of return of results is the measures taken to de-identify study data. At one eMERGE site (Vanderbilt), this process included severing data from all identifiers – effectively anonymizing the data. Return of results is not possible in this circumstance. Because of this and other aspects of local context, including the need to involve local Institutional Review Boards in the decision-making about return of individual results, the eMERGE consortium determined that centralized deliberations about specific classes of results would be advisory, assisting the consortium researchers to identify results from GWAS studies that are potentially returnable, but leaving the final decision to each site.

We believe that our experience reveals the complexity inherent to return of result decision-making. Nonetheless, our process provides a potential model for managing such decision-making in other multi-site genomic studies. A centralized deliberation process, such as the one enacted here as part of the eMERGE RROC, allows for pooling of resources in a careful consideration of the results likely to be generated by studies, incorporating appropriate expertise in clinical medicine, research ethics, and genome sciences. This deliberative process can identify and justify results that could be considered for return, on the basis of pre-agreed criteria such as clinical actionability. Yet, because of the many local factors that are relevant to the return of results, we believe a strong argument can be made for local control of the final decision and acknowledge this could mean that the same finding is treated differently at different institutions. Of note, no individual results have yet been returned in the eMERGE consortium, reflecting the high bar set by our process (i.e. the focus on clinical actionability meant relatively few findings from the first phase of network activities were potentially returnable), the impact of access to medical records, and the need to balance clinical criteria with other considerations such as consent restrictions and the views of local stakeholders.

Even though the current GWAS setting is simpler than studies involving large-scale sequencing – because clinically actionable findings are infrequent – we found a range of opinion about the importance of returning specific results. While a criterion of “clinically actionability” suggests a clear threshold for identifying results that should be considered for return, the identification of specific clinically actionable findings generated from the eMERGE studies was not straightforward. In the future, as genomic research incorporates whole exome and whole genome sequencing, the scope of issues to be considered will be substantially greater. With these more extensive analytical approaches, some results with urgent clinical importance will be generated, for example gene variants associated with inherited risk of colorectal cancer, while many more will be generated that are clinically important but less urgent, such as those deliberated on by our group. Most results will have uncertain clinical significance. Our experience suggests that there is a need for both research and deliberation related to return of research results, including the appropriate constitution of advisory bodies, evidence requirements for determinations of clinical validity and actionability, a consistent approach to the involvement of lay community voices, and appropriate methods for offering results to participants when findings are deemed potentially returnable.

Acknowledgments

Source of Support: This work was supported by the following U01 grants from the National Human Genome Research Institute (NHGRI), a component of the National Institutes of Health (NIH), Bethesda, MD, USA: HG004610, AG06781 (Group Health Cooperative); HG004608 (Marshfield Clinic); HG04599 (Mayo Clinic); HG004609 (Northwestern University); HG004438 (Center for Inherited Disease Research, Johns Hopkins University); HG004424 (Broad Institute); HG004603 (Vanderbilt University, also serving as the eMERGE Administrative Coordinating Center), and R01 HG003178 (University of Minnesota). Additional support was provided by a State of Washington Life Sciences Discovery Fund award to the Northwest Institute of Genetic Medicine.

The authors wish to thank members of the eMERGE Consent and Community Consultation Return of Results work group, including Lynn Dressler (UNC Chapel Hill), Joan Henriksen Heller (Mayo Clinic), Carol Somkin (Kaiser Permanente), Holly Tabor and Ben Wilfond (Seattle Children’s Research Institute), and Sue Trinidad (University of Washington). The authors also thank Joy Boyer and Rongling Li, of the National Human Genome Research Institute, for their help throughout the deliberation period.

Footnotes

Conflict of Interest Notification: The authors have no conflicts of interest to disclose.

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