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Dev Biol. Author manuscript; available in PMC Aug 15, 2013.
Published in final edited form as:
PMCID: PMC3697129
NIHMSID: NIHMS389361
mig-38, a novel gene that regulates distal tip cell turning during gonadogenesis in C. elegans hermaphrodites
Maria Martynovsky,a Ming-Ching Wong,a Dana T. Byrd,b Judith Kimble,b and Jean E. Schwarzbauera*
aDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544 1014, USA
bDepartment of Biochemistry and Howard Hughes Medical Institute, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706 1544, USA
*Corresponding author. Fax: +1 609 258 1035. jschwarz/at/princeton.edu (J.E. Schwarzbauer)
In Caenorhabditis elegans gonad morphogenesis, the final U-shapes of the two hermaphrodite gonad arms are determined by migration of the distal tip cells (DTCs). These somatic cells migrate in opposite directions on the ventral basement membrane until specific extracellular cues induce turning from ventral to dorsal and then centripetally toward the midbody region on the dorsal basement membrane. To dissect the mechanism of DTC turning, we examined the role of a novel gene, F40F11.2/mig-38, whose depletion by RNAi results in failure of DTC turning so that DTCs continue their migration away from the midbody region. mig-38 is expressed in the gonad primordium, and expression continues throughout DTC migration where it acts cell-autonomously to control DTC turning. RNAi depletion of both mig-38 and ina-1, which encodes an integrin adhesion receptor, enhanced the loss of turning phenotype indicating a genetic interaction between these genes. Furthermore, the integrin-associated protein MIG-15/Nck-interacting kinase (NIK) works with MIG-38 to direct DTC turning as shown by mig-38 RNAi with the mig-15(rh80) hypomorph. These results indicate that MIG-38 enhances the role of MIG-15 in integrin-dependent DTC turning. Knockdown of talin, a protein that is important for integrin activation, causes the DTCs to stop migration prematurely. When both talin and MIG-38 were depleted by RNAi treatment, the premature stop phenotype was suppressed. This suppression effect was reversed upon additional depletion of MIG-15 or its binding partner NCK-1. These results suggest that both talin and the MIG-15/NCK-1 complex promote DTC motility and that MIG-38 may act as a negative regulator of the complex. We propose a model to explain the dual role of MIG-38 in motility and turning.
Keywords: Cell migration, Distal tip cell, C. elegans, Hermaphrodite gonadogenesis, mig-38, Integrin
Cell migration is essential in many biological processes that are common among multicellular organisms including embryonic development, tissue morphogenesis, wound healing, and tissue homeostasis. Defects in regulation of cell migration contribute to many diseases and disorders such as arrested embryogenesis or cancer cell invasion and metastasis. Gonadogenesis in the Caenorhabditis elegans hermaphrodite provides an excellent model for studying mechanisms governing cell migration. During this process two specialized somatic cells, called distal tip cells (DTC), undergo long-range migrations leading to the formation of U-shaped gonad arms (Hubbard and Greenstein, 2000; Lehmann, 2001). DTC migration is coordinated with progression through larval development (Hedgecock et al., 1987; Kimble and Hirsh, 1979; Kimble and White, 1981). The two DTCs are born from the Z1 and Z4 precursors in the middle of the first larval stage (L1) (Fig. 1). Migration begins in the second larval stage (L2), as the DTCs move along the ventral basement membrane of the body-wall muscles centrifugally away from the midbody. During the third larval stage (L3), DTCs turn away from the ventral side and migrate to the dorsal surface where they turn again and migrate centripetally toward the midbody region throughout the fourth larval stage (L4). DTC migration ceases opposite the vulva yielding fertile young adult hermaphrodites.
Fig. 1
Fig. 1
DTC migration path determines the shape of the hermaphrodite gonad arms. DTCs are born in the first larval stage (L1) from the somatic gonad precursors Z1 and Z4 (white circles) in the gonad primordium with the germ cell precursors Z2 and Z3 (grey circles). (more ...)
Several classes of evolutionarily conserved genes regulate DTC migration and pathfinding during different stages of the process (Cram et al., 2006; Lehmann, 2001; Nishiwaki, 1999). Initiation of migration requires the extracellular protease GON-1/ADAMTS (Blelloch et al., 1999) and a basement membrane protein PPN-1/MIG-6 (Cram et al., 2006; Kawano et al., 2009). Two integrin receptors mediate cell adhesion to the extracellular matrix in C. elegans (Gettner et al., 1995). One integrin heterodimer composed of INA-1/α and PAT-3/β subunits is expressed by the DTCs throughout migration and is required for movement (Baum and Garriga, 1997; Meighan and Schwarzbauer, 2007). The other integrin heterodimer (PAT-2/α; PAT-3/β) commences its expression at the time of DTC turning away from the ventral side and controls pathfinding (Lee et al., 2001; Meighan and Schwarzbauer, 2007). Cessation of DTC migration requires downregulation of INA-1/α integrin by a transcription factor VAB-3-dependent mechanism (Meighan and Schwarzbauer, 2007). The netrin receptor family regulates turning away from the ventral surface. The extracellular matrix protein UNC-6/netrin is expressed ventrally and its receptors in the DTCs, UNC-40 and UNC-5, mediate repulsion away from the ventral basement membrane (Hedgecock et al., 1990; Merz et al., 2001; Wadsworth et al., 1996).
Signaling pathways activated by integrins and netrin receptors regulate DTC motility and trajectory. Src tyrosine kinases are well-known mediators of integrin signaling (Playford and Schaller, 2004), and SRC-1 acts downstream of UNC-5 during DTC turning (Itoh et al., 2005; Lee et al., 2005a). Rac GTPases are involved in DTC migration (Reddien and Horvitz, 2000; Wu and Horvitz, 1998) in response to netrin (Lee et al., 2005a; Levy-Strumpf and Culotti, 2007) and integrin signaling (Lee et al., 2005b; Meighan and Schwarzbauer, 2007). Receptor-specific genes have also been identified such as talin, which is required for continuous movement and turning of the DTCs (Cram et al., 2003). Talin has an important role in stimulating integrin activity (Critchley, 2009; Shattil et al., 2010), and it provides a link to the cytoskeleton by binding to F-actin and actin-binding proteins (Critchley, 2009).
To identify other genes required for DTC migration, we carried out a genome-wide RNAi-based screen and identified 99 genes that caused significant defects in gonad morphogenesis (Cram et al., 2006). A small subset of these genes displayed a relatively rare RNAi phenotype, where, upon their downregulation, a dramatic defect in DTC turning was observed. This group includes factors previously established to have roles in cell migration, such as talin and src-1/Src kinase, as well as a novel gene, F40F11.2/mig-38. Knockdown of mig-38 by RNAi disrupts turning of the DTCs resulting in the extension of the gonad arms away from the hermaphrodite midbody. Here we show that MIG-38 functions within DTCs and is required for execution of the DTC turn back toward the midbody region. We link this protein to integrin signaling and suggest a model to explain the role of MIG-38 in migration.
C. elegans strains and RNAi
All C. elegans strains were maintained at 20 °C on NGM agar seeded with Escherichia coli OP50 (Hope, 1999). The N2 Bristol strain was used as wild type. The following strains used in this work were provided by the Caenorhabditis Genetics Center: wild-type N2, rrf-3(pk1426), unc-6(ev400), mig-15(rh80), ina-1(gm144). Strain NG2517, gmIs5[ina-1::HGFP rol-6(su1006)] is a translational fusion of GFP to intact ina-1 including 5 kb of upstream sequence, able to rescue lethal allele ina-1(gm86) (Baum and Garriga, 1997). BC12753(F40F11.2p::GFP) was constructed by the British Columbia C. elegans Gene Expression Consortium and was obtained from the Caenorhabditis Genetics Center. To generate the DTC-specific RNAi strain, JK4143 [qIs57 II; rde-1(ne219)V; qIs140], we started with parental strain JK4135 [qIs57; rde-1(ne219)], where qIs57 is a lag-2::GFP insertion (Siegfried et al., 2004) We injected JK4135 animals with lag-2p::RDE-1+pRF4 DNAs to create qEx643, an extrachromosomal array that was then integrated to create qIs140. The rde-1 rescue of RNAi in the DTC was confirmed using GFP RNAi to reduce GFP expression.
The following RNAi clones used in this study were obtained from the C. elegans RNAi Library distributed by MRC geneservice courtesy of Julie Ahringer: F40F11.2/mig-38, mig-15, ina-1, nck-1, pat-4, and talin. The src-1 RNAi clone was made by Erin Cram (Cram et al., 2006). We prepared mig-38JS1 and mig-38JS2 RNAi constructs by designing primers that target regions outside of 486–1574 (positions on the F40F11.2b cDNA relative to the ATG) in the Ahringer F40F11.2 RNAi construct. Values in the primer names indicate the position on the cDNA relative to the ATG:
  • mig-38JS1: mig-38-2225–Forward: GCGAATTCCA TCGGAAATCGAA, and
  • mig-38-2460–Reverse: TGGAATTCGAGGAACCCTTA mig-38JS2: mig-38-2609–Forward: CAGAGCCAGAA CCGAAGAAG and
  • mig-38-3046–Reverse: TTGACTGGATTGCAGCTTTG.
These primers were used for PCR amplification from the cDNA template (prepared by RT-PCR of RNAs extracted from mixed stages of N2 nematodes). NheI and HindIII sites were added at the 5′ and 3′ ends, respectively, and were used to clone the PCR products into pPD129.36 vector. The RNAi feeding protocol used was essentially as described (Timmons, 2006). Briefly, bacteria carrying RNAi constructs in pPD129.36 were cultured overnight in LB liquid media supplemented with 40 μg/ml ampicillin, and then seeded onto NGM agar plates supplemented with IPTG (1 mM). For double and triple RNAi experiments, equal proportions of the cultured bacteria were seeded onto the plates. The expression of dsRNA was induced overnight at room temperature on the IPTG plates. Eggs were then transferred onto the plates and kept at 23 °C until the nematodes reached the desired stage of development.
Microscopy and sample preparation
To analyze gonad morphology, young adult or L4 hermaphrodites were mounted on a cover slip coated with 2% agarose in a drop of M9 buffer containing 0.08 M sodium azide and observed using a Nikon Diaphot 300 microscope equipped with DIC optics and a QImaging camera (QICAM). Anomalies such as migration in the wrong direction or migration without turning were scored as turning defects; aberrant stops were counted as defects in migration. Standard errors for the proportions of defective DTC migration and turning in a population were calculated using the observed frequency and sample size, assuming a binomial distribution (http://www.statrek.com). Comparisons were done using a standard test (one-tailed for comparing two proportions).
To assess tissue expression of F40F11.2/mig-38, mixed-stage BC12753 (F40F11.2p::GFP) were immobilized on 2% agarose cover slips in 0.08 M sodium azide and viewed using PE RS3 Spinning Disk on Nikon T-2000 microscope equipped with the 100 × Plan Apo 1.4NA objective lens and a Hamamatsu ORIA ER-4 camera. Images were captured and managed using Volocity software. To visualize tissues underlying the muscles, gonads were dissected for imaging GFP in DTCs. Dissections were performed in PBS supplemented with 0.2 mM Levamisole. A 26G needle was used to decapitate the nematodes followed by evaluation of extruded gonad. Visualization was done using a Nikon Eclipse Ti microscope equipped for epifluorescence. Images were captured with a Hamamatsu ORCA R2 Camera using iVision software (BioVision technologies). Several images were tiled to reconstruct full-length organs and display morphological markers in Figs. 25.
Fig. 2
Fig. 2
Cell-autonomous effects of mig-38 RNAi on DTC turning. rrf-3(pk1426) hermaphrodites were grown on E. coli HT115(DE3) either carrying pPD129.36 without an insert (empty) (A and C) or pPD129.36-mig-38 plasmid (mig-38) (B and C). White dashed arrows trace (more ...)
Fig. 5
Fig. 5
mig-38 RNAi suppresses the premature stop phenotype of DTCs with talin RNAi. DIC images of late L4 hermaphrodites show gonad arm morphologies from treatment with talin, empty RNAi (A) or talin, mig-38 RNAi (B). Black arrows mark the DTCs, arrowheads indicate (more ...)
Definition of phenotypes
Wild-type indicates the typical U-shaped gonad arm. “Wrong turn on dorsal” is the typical mig-38 RNAi phenotype in which DTCs did not turn toward the midbody but continued to migrate away from the midbody on the dorsal side. “Extended linear” indicates a DTC that did not turn at all and continued to migrate on the ventral side. “Ventralized” describes the typical unc-6(ev400) phenotype in which the DTC did not make the ventral to dorsal turn but did turn toward the midbody on the ventral side.
In Tables 3 and and4,4, the phenotype categories are simplified. The “turn” category includes wrong turn on dorsal, extended linear, and extra turn (pathfinding) defects. The extra turn defects in which the DTC does not go back toward the midbody are also included in the wrong turn on dorsal category in Table 1 and Fig. 2C. The “short” category includes linear gonad arms that did not extend past the midpoint between the vulva and the end of the intestine and either remained on the ventral side or extended on the diagonal away from ventral.
Table 3
Table 3
mig-38 RNAi suppresses migration defect of talin RNAi.
Table 4
Table 4
Effects of mig-15 or nck-1 RNAi on mig-38 and talin RNAi defects.
Table 1
Table 1
Quantification of mig-38 RNAi-induced DTC turning defects.
Cloning of the F40F11.2 5′end
RNA from mixed-stage population nematodes was isolated. Briefly, nematodes were collected in M9 buffer. After dounce-homogenizing in 1 ml Trizol and β-mercaptoethanol (12.5 μl), the pellet was extracted twice using chloroform. RNA was precipitated using isopropanol, rinsed with ethanol, and resuspended in DEPC H2O. RNA template (1 μg) was used to generate cDNA using Superscript reverse transcriptase primed with random hexamers. For PCR amplification 1 μl of the cDNA reaction was used as a template with these primers: SL1: 5′TTTAATTACCCAAGTTTGAG, F40F11.2RM: 5′ GTTGTACAGAAACGAATGTT. The 1500 bp amplicon was cloned into the T-vector (Promega) and sequenced.
Quantitative RT-PCR
The JE0164 mwEx164 [myo-3p::YFP::MIG-38] transgenic strain (described in Supplementary Materials and Methods) was treated with mig-38 or talin RNAi using the post-embryonic feeding protocol described above. Total RNA from RNAi-treated adult animals was isolated using TRIzol reagent (Life Technologies) and purified using the RNeasy Mini Kit (Qiagen). TRIzol was used according to manufacturer's instructions with the addition of a 5-min incubation in TRIzol reagent while vortexing the sample. RNA quantity was measured using a NanoDrop spectrophot-ometer (Thermo Scientific). 1 μg of total RNA per sample was reverse transcribed using SuperScript II Reverse Transcriptase (Life Technologies). The resulting cDNA was then used for realtime PCR analysis using Brilliant II SYBR Green QPCR Master Mix with low ROX (Agilent Technologies) and a Stratagene Mx3000P QPCR system (Agilent Technologies). The following three reference genes were used as normalization factors for each cDNA sample: pmp-3 (C54G10.3), eif-3c (T23D8.4), and Y45F10D.4, which encode a peroxisomal membrane protein, a eukaryotic initiation factor, and a putative iron–sulfur cluster assembly enzyme, respectively. These reference genes were chosen because they are not required for DTC migration (Cram et al., 2006) and have stable expression levels (Hoogewijs et al., 2008; Zhang et al., 2012). Primers were designed to produce an amplification product that spans an intron and does not overlap with the RNAi trigger sequences used for knockdown. Primer sequences are listed in Supplementary Table 1. Levels of mig-38 or talin mRNA in RNAi-treated animals were compared to levels in RNAi control-treated animals. Based on the results of three independent experiments, JE0164 animals treated with mig-38 RNAi exhibited a 24% decrease in mRNA levels (0.76 ± 0.07; p < 0.01), and those treated with talin RNAi exhibited a 69% decrease (0.31 ± 0.02; p < 0.01). Treated animals did not reproduce so we could not test expression in their offspring.
F40F11.2/mig-38 acts cell-autonomously within DTCs to regulate their turning
The migration path of the DTCs during gonad morphogenesis is reflected in the final symmetrical U-shapes of the gonad arms (Fig. 1). The DTC trajectory is marked by two turns: the DTC re-orients away from the ventral basement membrane to migrate toward the dorsal side, and, once it reaches the dorsal surface, it turns to migrate toward the hermaphrodite midbody (Hedgecock et al., 1987). This gonad morphology is preserved in the rrf-3(pk1426) RNAi-sensitized nematodes (Simmer et al., 2003) when treated by feeding RNAi with bacteria carrying the pPD129.36 plasmid without an insert (Fig. 2A). Hermaphrodites subjected to post-embryonic F40F11.2 RNAi have a distinctive abnormal gonad arm shape, demonstrating a defect in turning (Fig. 2B). 65±8% (N=145) of the DTCs fail to turn back toward the midbody region (Fig. 2C). Specificity of the RNAi phenotype was confirmed using constructs that target two other regions of the F40F11.2 coding sequence. Treatment with these two constructs together gave 32 ± 9% of gonad arms (N= 100) with a wrong turn phenotype that was identical to the one produced by the original F40F11.2 RNAi construct (Fig. 2C). Based on this DTC migration phenotype, this gene has been named mig-38.
During embryogenesis, mig-38 plays an essential role since a deletion allele, mig-38(ok2621) (from the C. elegans Gene Knockout Consortium), has an embryonic lethal phenotype. Post-embryonic RNAi to knockdown mig-38 expression allowed us to bypass this embryonic requirement. Off-target effects or variable phenotypic penetrance due to incomplete knockdown are caveats of the RNAi technique. As shown above, we tested multiple RNAi constructs that target different portions of the mig-38 transcript, and all resulted in a consistent DTC migration phenotype. We have also conducted quantitative reverse transcription (qRT)-PCR for mig-38 as well as for talin to show knockdown of expression in animals that have been treated with either mig-38 or talin RNAi constructs, respectively (see Materials and Methods for details). Furthermore, genetic mutants, in addition to RNAi treatments, were used for parallel analysis whenever possible.
To determine whether mig-38 functions cell-autonomously in DTCs, we depleted its expression with DTC-specific RNAi. JK4143 is a strain designed to restrict the RNAi machinery to DTCs. This strain is homozygous for rde-1(ne219) so that virtually all cells lack RDE-1, an Argonaute protein required for siRNA maturation (Yigit et al., 2006); however, it also carries a transgene harboring the wild-type rde-1 gene under control of the lag-2 promoter, which drives expression specifically in the DTCs in L3, L4 and adult animals (Crittenden et al., 2006). When JK4143 hermaphrodites were treated with mig-38 RNAi, 34 ± 8% (N= 122) of the gonad arms displayed a defect in DTC turning where the DTCs migrated away from the midbody on the dorsal basement membrane (Fig. 2C). The 34% defective gonad arms is significantly higher than in empty vector-treated rde-1(ne219); lag-2p::RDE-1 hermaphrodites [9 ± 5%, N= 105; P [double less-than sign] 0.001]. These results show that mig-38 acts cell-autonomously within the DTCs to regulate the turn toward the midbody.
MIG-38 is expressed by DTCs throughout migration
Two locations for the 5′ end of the F40F11.2/mig-38 transcript are predicted in Wormbase; F40F11.2b lies 450 bp upstream of F40F11.2a. Using RT-PCR of RNAs prepared from mixed stages of N2 nematodes, we mapped the 5′ end to the F40F11.2b site which matches the position of GFP in the F40F11.2p::GFP transcriptional fusion construct generated by the BC C. elegans Gene Expression Consortium (Hunt-Newbury et al., 2007). In larvae and adult hermaphrodites, the F40F11.2/mig-38 promoter-driven GFP signal is found mainly in neurons, muscles, and other contractile tissues such as the spermatheca (Hunt-Newbury et al., 2007). We detected mig-38 expression in the somatic gonad precursors, Z1 and Z4 (Fig. 3A) and later within DTCs during larval and adult stages (Fig. 3B, C). Gonadal dissections allowed detection of F40F11.2p::GFP expression within the gonadal sheath cells (Fig. 3C and C′). However, expression was not observed in the germ cells or their precursors Z2 and Z3 (Fig. 3A and A′).
Fig. 3
Fig. 3
mig-38 is expressed in DTCs and gonadal sheath cells. (A) DIC image of an L1 hermaphrodite expressing F40F11.2/mig-38p::GFP merged with the confocal image in the same focal plane. (A′) DIC image highlighting the gonad primordium. White (more ...)
The mig-38 gene is predicted to encode a relatively large 179 kD intracellular protein; no well-defined functional motifs have been identified in the protein sequence. MIG-38 is conserved among species of the Caenorhabditis genus. Hypothetical proteins homologous to MIG-38 are present in the genomes of C. remanei (CRE12805; 64% similarity), C. japonica (CJA12520; 62% similarity), C. brenneri (CBN13309; 62% similarity), and C. briggsae (CBG06120; 61% similarity). Drosophila pseudoobscura also contains a homologous hypothetical protein (GA28568; 25% similarity). One human protein, isoform F of proteoglycan 4 (ENSP00000356456; 28% similarity), shows homology over about half the length of MIG-38. A possible paralog of MIG-38 in C. elegans is DAO-5 (29% similarity), a predicted nucleolar protein. The unique nature of the MIG-38 sequence is intriguing given its importance in C. elegans gonadogenesis.
To provide insight into the subcellular localization of MIG-38, we generated a translational fusion of yellow fluorescent protein (YFP) to the N-terminus of MIG-38 under the control of the myo-3 promoter. As a control, a transgenic strain that expresses YFP alone under the control of the myo-3 promoter was generated. RT-PCR confirmed expression of the YFP::MIG-38 fusion transcript (Supplementary Fig. S1A). Fluorescence imaging of whole nema-todes showed YFP and YFP::MIG-38 in the cytoplasm of body wall muscle cells. YFP::MIG-38 also appeared to be localized in muscle cell nuclei (Supplementary Fig. S1B and C). Confocal microscopy of YFP localization in adult body wall muscles revealed that YFP::MIG-38 localizes to both the cytoplasm and the nucleus (Supplementary Fig. S2B–E). Compared to YFP localization (Supplementary Fig. 2A), YFP::MIG-38 localization appeared enriched in the nucleus (compare Supplementary Fig. S2A and A″ with B and B″). In analyses of at least 19 different nematodes from each strain, we observed nuclear enhancement in muscles from only 3% of myo-3p::YFP nematodes whereas 100% of myo-3p::YFP:: MIG-38 muscles showed distinct nuclear localization as in Supplementary Fig. S2C–E. Imaging of live nematodes also showed enhanced nuclear expression (Supplementary Fig. 2F). These data indicate that MIG-38 localizes to both the cytoplasm and the nucleus, and therefore might have several distinct functions in regulating cell turning.
mig-38 acts during turning toward the midbody region
The majority of the gonad arms in rrf-3(pk1426) hermaphrodites treated with mig-38 RNAi display a defect in DTC turning toward the midbody on the dorsal surface (Fig. 2C). To determine whether mig-38 gene function is restricted to the dorsal side or whether it affects the turn toward the midbody independently of the dorsal location, we tested knockdown of mig-38 in a ventralized unc-6 mutant (Culotti and Merz, 1998; Hedgecock et al., 1990). C. elegans gene unc-6 encodes a basement membrane protein UNC-6/netrin that serves as an extracellular guidance cue in many species (Ishii et al., 1992; Kennedy et al., 1994; Serafini et al., 1994). In C. elegans, UNC-6 expression is restricted to the ventral side where it induces turning of the DTC from ventral toward the dorsal side (Hedgecock et al., 1990; Wadsworth et al., 1996).
In unc-6(ev400) null mutants, DTC migration toward the dorsal side is compromised and DTCs remain on the ventral surface throughout all the stages of migration (Hedgecock et al., 1990; Wadsworth et al., 1996). In these mutants, the turn toward the midbody is executed by the DTCs on the ventral instead of the dorsal surface (Fig. 4A). This results in ventralized gonad arms, a phenotype characteristic of netrin mutants in late L4 and young adult stages [66 ± 8%, N=149] (Table 1). This defect was not observed in N2 wild-type hermaphrodites raised on an empty vector control or when treated with mig-38 RNAi (Fig. 4B, Table 1). When unc-6(ev400) mutants were treated with mig-38 RNAi, 62 ± 7% (N= 206) of the gonad arms were extended along the ventral side (Fig. 4C) indicating that the DTCs had not turned (Table 1). This extended linear phenotype was rarely observed in unc-6(ev400) mutants treated with an empty vector [5 ± 4%, N= 149] (Table 1), and it was not detected in wild-type N2 hermaphrodites treated with mig-38 RNAi (Table 1). RNAi treatment is less effective in a wild-type background than in RNAi-sensitized rrf-3(pk1426) nematodes (Fig. 2C and Table 1). Even so, there was a dramatic increase in linearized gonad arms in unc-6(ev400) due to mig-38 RNAi which shows that this phenotype represents a combined effect of the lack of UNC-6/netrin and reduction of MIG-38. Thus, mig-38 acts within the DTCs to regulate the turn toward the midbody, and it has this effect whether the cells are positioned on the ventral or dorsal side of the animal. The high frequency of the extended linear gonad arm phenotype (62%) may suggest that the absence of netrin sensitizes unc-6(ev400) hermaphrodites to mig-38 RNAi.
Fig. 4
Fig. 4
Knockdown of mig-38 expression affects turning on the ventral side. Dashed lines trace the DTC paths in DIC images of gonad arms in hermaphrodites at late L4/young adult stage. Dorsal side is up. (A) unc-6 (ev400) hermaphrodite posterior gonad; black (more ...)
mig-38 interacts genetically with the ina-1 integrin adhesion receptor gene
The DTCs migrate along a basement membrane path during gonadogenesis and integrin receptors for extracellular matrix are required for this migration (Baum and Garriga, 1997; Lee et al., 2001; Meighan and Schwarzbauer, 2007). The INA-1/α integrin subunit pairs with the single β subunit encoded by the pat-3 gene (Gettner et al., 1995). This heterodimer is expressed in DTCs and is required for their movement (Baum and Garriga, 1997; Meighan and Schwarzbauer, 2007). In the hypomorphic allele ina-1(gm144), with a missense mutation in the extracellular domain, DTC migration is misdirected on the dorsal surface (Baum and Garriga, 1997). Also, ina-1 RNAi results in premature cessation of DTC migration (Meighan and Schwarzbauer, 2007). These phenotypes indicate that INA-1 is involved in regulating DTC migration and pathfinding.
To assess whether knockdown of expression of both ina-1 and mig-38 exacerbates the defects in turning, we treated rrf-3(pk1426) hermaphrodites and found a significant increase in the number of extended linear gonad arms [34 ± 8%, N=152] compared to animals treated with RNAi for mig-38 [6 ± 3%, N=339; P [double less-than sign] 0.001] or ina-1 [7 ± 4%, N=132; P [double less-than sign] 0.001] (Table 1). The increase in linear gonad arms shows an enhancement of the turning defect. The efficacy of ina-1 RNAi was confirmed by treating NG2517 hermaphrodites expressing an INA-1::GFP translational fusion; we observed a GFP signal in 100% of DTCs when treated with an empty vector (N= 40), but only 13% were fluorescent in ina-1 RNAi-treated individuals (N= 39). We conclude that INA-1 integrins and MIG-38 act together to regulate DTC turning. With reduction of both gene products, the ability of DTCs to change the direction of migration is diminished.
mig-15/NIK contributes to integrin signaling during turning
In C. elegans, the mig-15 gene encodes the ortholog of vertebrate Nck-interacting kinase (NIK) that binds to the PAT-3 integrin β subunit in vitro and functions in the ina-1/pat-3 pathway to cell-autonomously regulate commissural axon navigation and motility (Poinat et al., 2002). To examine the connection between mig-15 and mig-38, we compared their roles in DTC turning in hermaphrodites. Knockdown of mig-15 expression affected DTC migration and induced the same wrong turn on the dorsal surface as observed with mig-38 RNAi, albeit at much lower penetrance (Table 2). Hermaphrodites treated with mig-15 RNAi displayed a small percentage of DTC turning defects [8 ± 4%, N= 146], where the cell migrates away from the midbody on the dorsal surface, a phenotype similar to mig-38 RNAi. Knockdown of mig-15 together with mig-38 increased the total percentage of turning defects [49 ± 7%, N= 178] compared to either mig-15 [8 ± 4%, N= 146; P [double less-than sign] 0.001] or mig-38 [30 ± 5%, N=278; P [double less-than sign] 0.001] RNAi alone. The same DTC turning phenotype was observed in mig-15(rh80) hypomorphs (Table 2). This allele contains a premature stop codon after the kinase domain and is thus thought to retain partial MIG-15 activity (Shakir et al., 2006). 6 ± 3% of mig-15(rh80) DTCs did not execute the turn toward the midbody [N= 156], and this total percentage markedly increased upon treatment with mig-38 RNAi [48 ± 14%, N= 52; P [double less-than sign] 0.001] (Table 2). This rise in DTC turning defects is especially pronounced since, unlike rrf-3(pk1426), mig-15(rh80) hermaphrodites are not sensitized to RNAi, and mig-38 RNAi only produced 14 ± 4% of DTC turning defects in the N2 background [N= 270; P [double less-than sign] 0.001]. These results suggest that mig-15 and mig-38 act together to regulate DTC turning. Interestingly, we observed a dramatic increase in extended linear gonad arms upon reduction of mig-38 expression in mig-15(rh80) hermaphrodites [33 ± 13%, N=52] compared to empty vector-treated mig-15(rh80) [3 ± 2%, N=156; P [double less-than sign] 0.001]. A similar enhancement of the extended linear turning defect was also produced by ina-1 and mig-38 double RNAi, further suggesting that mig-38 acts together with mig-15 to regulate ina-1 signaling during DTC turning.
Table 2
Table 2
mig-38 and mig-15 act together to regulate turning.
mig-38 downregulation rescues DTC migration defects induced by talin RNAi
From our genome-wide screen, the small group of genes that affect turning back to the midbody region includes the gene encoding talin (Cram et al., 2003, 2006). Talin is a well-established activator of integrin receptors through its direct binding to the β integrin cytoplasmic domain (Pfaff et al., 1998; Shattil et al., 2010; Tadokoro et al., 2003; Wegener et al., 2007). Knockdown of talin by RNAi in wild-type hermaphrodites induces turning defects as well as early cessation of DTC migration (Cram et al., 2003).
Because of its direct link to integrins, we explored the relationship between talin and MIG-38 in DTC migration. Treatment of rrf-3(pk1426) hermaphrodites with talin RNAi resulted in defects in turning back to the midbody [37 ± 6%] and premature cessation of DTC migration producing short gonad arms [44 ± 7%, N=219] (Fig. 5A, Table 3) (Cram et al., 2003). A gonad arm was classified as “short” if the DTC stopped migrating at or before the midpoint between the vulva and the end of the intestine of the late L4/young adult hermaphrodite. The midpoint serves as a rough marker of the turning point for wild-type DTCs (Fig. 5C). Thus, premature cessation caused by talin RNAi occurs during DTC movement on the ventral side prior to the turn. In contrast to talin, knockdown of mig-38 expression caused a defect in turning but not in forward movement (Table 3). In fact, the malformed gonad arms extended well past the midpoint, and usually reached as far as the pharynx or the anus of a young adult hermaphrodite (see Fig. 2B).
Surprisingly, combined treatment of rrf-3(pk1426) hermaphrodites with mig-38 and talin RNAi rescued the premature cessation of migration defect caused by talin RNAi (Fig. 5B). None of the gonad arms fit into the “short” category (Table 3) while there was a significant increase in the number of gonad arms that displayed defects in turning [82 ± 6%, N= 165] (Fig. 5C, Table 3). This latter effect indicates that talin was effectively downregulated in double RNAi treatment along with mig-38. Therefore, mig-38 RNAi treatment suppresses the talin RNAi phenotype, which suggests that these two genes have opposing effects on DTC motility. Like mig-38, RNAi knockdown of src-1 expression also caused defects in DTC turning [37 ± 9%, N= 102], but not in motility (Table 2). However, double knockdown of src-1 with talin did not affect the percentage of short gonad arms [42 ± 9%, N= 104 compared to 44 ± 7%, N= 219] (Table 3), suggesting that suppression of this phenotype is specific to mig-38.
Measurements of the lengths of the gonad arms of hermaphrodites subjected to talin RNAi, mig-38 RNAi, and talin, mig-38 double RNAi confirmed the change in migration distance (Fig. 5C). Gonad arm length was normalized to the length of the intestine to account for differences in nematode size. We found that talin RNAi-treated animals had shorter gonad arms (median: 0.43, N= 29) than either double mig-38, talin RNAi-treated hermaphrodites (median: 0.77, N= 41) or mig-38 RNAi treated animals (median: 0.99, N= 15). mig-38 RNAi gonads with and without talin knockdown were consistently longer than the talin RNAi gonads (Fig. 5C). In contrast, the average gonad to intestine proportion in src-1, talin double RNAi-treated hermaphrodites (median: 0.47, N= 33) was similar to that of talin RNAi alone (median: 0.43, N= 29). These results support the conclusion that reduction of mig-38 expression rescues the early DTC stopping defect caused by talin RNAi.
mig-15 and nck-1 have a role in DTC migration
Knockdown of mig-38 expression compensates for the effects of talin depletion on DTC motility. However, both genes work with ina-1. Talin has a key function in activation of integrin receptors (Shattil et al., 2010), and we showed that mig-38 and ina-1 act together in DTC turning. One way for knockdown of mig-38 to promote migration in the absence of talin expression is by acting on integrins through a separate pathway from talin.
Since we found that MIG-38 works with MIG-15/NIK in turning, it seemed possible that these two proteins may also function in the regulation of DTC motility. A series of RNAi experiments with rrf-3(pk1426) or the mig-15(rh80) mutant was performed. In the triple RNAi treatments, nematodes were grown on plates with equal proportions of three bacterial strains carrying different RNAi constructs or the empty vector. As with double RNAi (Table 3), we again observed a significant reduction in short gonad arms in rrf-3(pk1426) hermaphrodites with knockdown of mig-38 and talin [5.4 ± 3%, N= 280] compared to talin knockdown alone [51.5 ± 5%, N= 304]. Reduction of expression of mig-15 along with mig-38 and talin significantly increased the number of short gonad arms [22 ± 6%, N= 173 compared to 5.4 ± 3%; P [double less-than sign] 0.001) (Table 4). Treatment of mig-15(rh80) hypomorphs with mig-38 and talin double RNAi resulted in a similar percentage of short gonad arms [20 ± 7%, N= 144] as treatment with talin RNAi [compared with 28 ± 7%, N= 141]. Thus, mig-38 RNAi does not suppress the motility defects from reduction of talin if mig-15 is also reduced. These results suggest that, in contrast to the similar roles for mig-38 and mig-15 in DTC turning, in motility these genes have opposing roles. Interestingly, treatment of mig-15(rh80) hermaphrodites with talin RNAi resulted in a higher percentage of short gonad arms [28 ± 7%, N= 141] than talin RNAi treated N2 hermaphrodites [5 ± 3%, N= 152; P [double less-than sign] 0.001] (Table 4), indicating that both MIG-15 and talin promote migration.
PAT-4/ILK is another integrin-associated protein (Mackinnon et al., 2002; Xu et al., 2006) and its downregulation by RNAi caused mild defects in DTC migration [3 ± 3%, N= 102] on the dorsal surface (Table 4). Unlike with mig-15, the premature stop of migration phenotype was not observed with triple knockdown of pat-4, mig-38, and talin [4 ± 4%, N= 99]; the percentage of occurrence was similar to mig-38, talin, empty RNAi [5.4 ± 3%, N= 280] (Table 4). Thus, reduction in mig-15, but not pat-4, can reverse mig-38 RNAi suppression of migration defects that occur with depletion of talin.
MIG-15/NIK interacts with the Nck adapter protein, which also localizes to integrin adhesion sites (Buday et al., 2002; Li et al., 2001). The C. elegans ortholog of Nck is encoded by nck-1, which is required for migration of the excretory cells during excretory canal outgrowth (Schmidt et al., 2009). To determine whether nck-1 regulates DTC migration and turning, we performed the same triple RNAi experiments as with mig-15; unlike mig-15, no suitable loss-of-function allele was available for nck-1. Knockdown of nck-1 plus talin gave a small but significant increase in the percentage of short gonad arms [63 ± 9%, N=100] compared to talin RNAi [51.5 ± 5%, N=304; P=0.02] suggesting that both nck-1 and talin genes act to promote motility. Triple RNAi with nck-1, mig-38, and talin gave a similar percentage of defects [20 ± 7%; N= 112] as with mig-15, mig-38, and talin RNAi treatment [22 ± 6%; N= 173] (Table 4). These results suggest similar roles for nck-1 and mig-15 in DTC motility and indicate that mig-38 regulates a pathway containing both mig-15 and nck-1.
DTC migration is indispensible for gonadogenesis in C. elegans hermaphrodites. Multiple factors are involved in facilitating this process by driving motility and/or regulating pathfinding. One of the key events during DTC migration is a change in direction by cell turning. Wild-type DTCs execute a turn away from the ventral basement membrane toward dorsal, and then they turn on the dorsal basement membrane toward the midbody (Cram et al., 2006; Hedgecock et al., 1987; Nishiwaki, 1999). In this report, we have characterized mig-38, a gene that is required for execution of the turn toward the midbody. mig-38 encodes a novel protein that acts in a DTC-autonomous manner to promote this turn on both the dorsal (as in wild-type) and ventral (as in the unc-6(ev400) ventralized mutant) surfaces. Our results link this protein to cell adhesion and motility. First, the turning defects are exacerbated with double knockdown of MIG-38 and either INA-1/α integrin or MIG-15/NIK, which binds to PAT-3/β integrin cytoplasmic domain (Poinat et al., 2002). Second, knockdown of mig-38 expression restores DTC motility that is lost with talin RNAi. Since talin also interacts with integrin receptors (Pfaff et al., 1998; Tadokoro et al., 2003; Wegener et al., 2007), the suppressive effect when both genes are knocked down suggests that MIG-38 acts on DTC motility through a pathway that does not include talin.
The integrin heterodimer INA-1/PAT-3 has a major role in driving DTC motility (Baum and Garriga, 1997; Meighan and Schwarzbauer, 2007). This integrin is also involved in turning since simultaneous knockdown of mig-38 and ina-1 expression by RNAi significantly enhanced the penetrance of a no-turn, extended linear gonad arm phenotype. Turning defects were also observed with mig-38 RNAi treatment of ina-1(gm144) hypomorphs, but the percentage of defects was not increased over RNAi treatment of wild type nematodes (unpublished observations). ina-1(gm144) has a missense mutation in the extracellular domain of the integrin that does not affect ligand binding, and the distinctive phenotype of this ina-1 allele may result from interactions with two different extracellular ligands (Baum and Garriga, 1997). Proteins that act on the cytoplasmic tails of the integrins, as proposed for MIG-38, may not be able to modulate the effects of this extracellular mutation. Reduction of mig-15/NIK gene function produced the same turning defect as mig-38 RNAi, albeit with lower penetrance, and knockdown of both genes together significantly increased the number of turning defective gonad arms. Therefore, mig-38 genetically interacts with ina-1 and the associated kinase gene mig-15 to regulate turning. We propose that MIG-38 acts through MIG-15 to affect the function of the INA-1/PAT-3 heterodimer in this process (Fig. 6A).
Fig. 6
Fig. 6
Model for the role of MIG-38 in DTC turning. The integrin heterodimer INA-1/PAT-3 is required for motility and turning of the DTCs and its activity is regulated by two associated proteins, talin and MIG-15. (A) Downregulation of MIG-38 with either MIG-15 (more ...)
Talin promotes integrin activity by binding to the β integrin cytoplasmic domain (Pfaff et al., 1998; Shattil et al., 2010; Tadokoro et al., 2003; Wegener et al., 2007) and it also links integrins to the actin cytoskeleton (Critchley, 2009). Loss of talin had a similar effect on DTC turning as loss of MIG-38 (this report and (Cram et al., 2006), but talin is also required for DTC movement since reduction of its expression gave a significant proportion of short gonad arms. These effects on turning and motility suggest that talin binding to PAT-3/β integrin has a dual role in DTC migration. It is needed for forward motility so that when it is knocked down, the DTCs stop prematurely. For those cells that continue forward movement, talin is needed to change direction and, in its absence, the cells do not turn back toward the midbody region. Since talin binds directly to the β integrin cytoplasmic domain and stimulates integrin activity, the reduction-of-talin effects could result from reduced levels of integrin activity during movement and/or at the turn. Knockdown of talin expression will also change the connection between integrins and the actin cytoskeleton (Critchley, 2009; Shattil et al., 2010), which suggests that perturbation of cell shape changes may also contribute to the defects in motility and turning.
Our data show that reduction of talin expression causes a motility defect that is suppressed by MIG-38 depletion. This suggests that mig-38 affects a motility-promoting pathway, but one that is separate from talin (Fig. 6B). Knockdown of MIG-15 or NCK-1 counteracted the suppressive effects of MIG-38 leading to an increase in short gonad arms, linking these molecules to cell motility. Vertebrate studies implicate MIG-15/NIK in regulating changes in cell morphology through phosphorylation of actin-modulating ERM proteins resulting in extension of lamellipodia (Baumgartner et al., 2006). Also, mammalian NIK regulates adhesion through promoting integrin activation downstream of Eph receptors (Becker et al., 2000). MIG-15/NIK is involved in cell movement and pathfinding of migrating neurons and neuroblasts in C. elegans (Chapman et al., 2008; Poinat et al., 2002; Shakir et al., 2006). This kinase also regulates development and maintenance of cell polarity in Q neuroblasts (Chapman et al., 2008). In a loss-of-function mig-15(rh80) mutant, more than one-third of the Q cells elaborated cell extensions in the wrong direction or failed to polarize at all (Chapman et al., 2008). Similar to these findings in neurons, our data point to a dual role for MIG-15/NIK in controlling motility and directionality of DTCs through integrins (Fig. 6A and B).
The binding partner of MIG-15/NIK, NCK-1/Nck adapter protein, serves as a link between cell surface receptors, including integrins, and the actin cytoskeleton (Buday et al., 2002; Li et al., 2001). Numerous signaling molecules bind to Nck in different cellular systems, and assessing the physiological importance of these interactions is a subject of active investigation (Buday et al., 2002; Funasaka et al., 2010; Lettau et al., 2009). Nck has been implicated in axon guidance and cell migration in flies (Buday et al., 2002), and our data link NCK-1 to cell motility since its loss increased the penetrance of the short gonad arm phenotype in the absence of talin. Therefore, we suggest that the MIG-15/NCK-1 complex is involved in promoting DTC motility (Fig. 6B).
Can we reconcile a synergistic role for MIG-38 with one integrin-associated protein, MIG-15, and an opposing role with another, talin? We propose that both MIG-15/NCK and talin contribute to motility through their interactions with PAT-3/β integrin (Fig. 6B). Our data suggest that mig-38 negatively impacts the function of the MIG-15/NCK-1 complex such that the reduction of both MIG-38 and talin allows this complex to substitute for talin and promote motility. The proposed inhibitory effect of a MIG-38 pathway on MIG-15/NCK-1 may promote dissociation of the complex, thus allowing MIG-15 to interact with other factors and participate in integrin-mediated turning (Fig. 6A). In this model, MIG-38 positively affects MIG-15 and its interaction with INA-1/PAT-3 integrin to promote a change in the direction of DTC migration (Fig. 6A). Given its apparent localization to both the cytoplasm and nucleus, MIG-38 could act directly on this pathway or indirectly perhaps through effects on gene expression. Thus when MIG-38 is depleted, stimulation of a turning pathway is reduced, but MIG-15 could still couple with NCK-1 and promote DTC motility.
Mechanistically, MIG-38 might function in turning through control of cell polarity. MIG-15/NIK has previously been shown to control the development of cell polarity (Chapman et al., 2008) and our findings show a synergistic effect between MIG-38 and MIG-15/NIK in turning raising the possibility that MIG-38 acts as a switch from forward movement to turning by invoking MIG-15 function in repolarization.
Supplementary Material
01
Acknowledgments
We thank Hongyu Shang for critical reading of the manuscript and valuable suggestions, Joe Goodhouse for his help with microscopy, R. Daniel Slone for technical help, and Andrew Fire (Stanford University, Stanford, CA) for the L4817 vector. Some nematode strains used in this work were provided by the Caenorhabditis Genetics Center, which is funded by the NIH National Center for Research Resources (NCRR). Funding was provided to JES by NIH R01GM059383 and by the Cell Migration Consortium GLUE Grant no. NIH U54 GM064346. MM was supported by the NIH pre-doctoral training Grant no. 5T32GM007388. MCW was a postdoctoral fellow of the New Jersey Commission on Cancer Research.
Footnotes
Appendix A. Supporting information: Supplementary data associated with this article can be found in the online version at http://dx.doi.org/10.1016/j.ydbio.2012.06.011.
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