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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
Mod Pathol. Author manuscript; available in PMC 2013 July 1.
Published in final edited form as:
Mod Pathol. 2012 December; 25(12): 1599–1608.
Published online 2012 August 10. doi: 10.1038/modpathol.2012.121

Table 5

Resolution of discordant variant calls between Sanger Sequencing of fresh frozen cancers and Illumina sequencing of matching FFPE cancer.

Cancer DesignationGene NameChr:PositionRef.VarFFPECancerNormalStatus [SNP, Mutant, or No Variant]Notes
1 NAV3 Chr12_77117387GANoNoNoNo Variant
2 PTPRU chr1:29491107CTYesYesNoMutantCalled by SOAPsnp and UGT but not Atlas-SNP2
2 PLCG2 Chr16_80460330CTNoNoNoNo variant
3 SCN3B Chr11_123018543TANoNoNoNo Variant