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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptNIH Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
 
Wound Repair Regen. Author manuscript; available in PMC Mar 1, 2014.
Published in final edited form as:
PMCID: PMC3594658
NIHMSID: NIHMS437529
Empiric evidence for a genetic contribution to predisposition to surgical site infection
James P. Lee, MD,1 Harriet W. Hopf, MD,1 and Lisa A. Cannon-Albright, PhD2,3
1Department of Anesthesiology, University of Utah School of Medicine
2Division of Genetic Epidemiology, Department of Medicine, University of Utah School of Medicine
3George E. Wahlen Department of Veterans Affairs Medical Center, Salt Lake City, Utah. Division of Genetic Epidemiology, Department of Medicine, University of Utah School of Medicine
Corresponding Author: Harriet W. Hopf, University of Utah School of Medicine, 3C444, 30 N 1900 E, Salt Lake City, UT 84132, Phone: 801-205-1013, Fax: 801-581-4367, Harriet.hopf/at/hsc.utah.edu
The genetics of microbial pathogens have been extensively studied, but there has been little work on human genetic susceptibility to surgical site infection (SSI). We analyzed a large genealogical population database to study the familial contribution to SSI.
We analyzed 651 individuals with ICD-9 codes indicating presence of SSI. Matched hospital controls were randomly selected from the database based on birth year, sex and birthplace. The average relatedness of all possible pairs of cases, and separately of controls (x1000 sets) was compared empirically. The relative risk for SSI was estimated by comparing the number of observed affected individuals among the relatives of cases to the number of affected individuals observed among relatives of matched hospital controls. The Genealogical Index of Familiality test for patients with SSI showed significant excess relatedness (p< 0.010); this excess was still observed when close relationships were ignored (p=0.019). The RR for third-degree relatives of cases was significantly elevated (1.62, p = 0.029). The significant excess relatedness and the significantly elevated RR to distant relatives support a genetic predisposition to acquiring SSI.
Keywords: surgical site infection, genetics, familiality, population database
Surgical site infection (SSI) and other healthcare-associated infections (sepsis, pneumonia, urinary tract infection) remain the most common complications of surgery, and are associated with increased length of stay, cost, and mortality1. Many risk factors increase the risk of SSI2. Some of these risk factors are related to the procedure itself2-4 and some are specific to the patient2,5. Procedural risks include surgical technique, degree of contamination at the operative site, duration of the operation, site of operation, skin antisepsis, surgical drains, operating room ventilation, duration of surgical scrub, and preoperative skin preparation2. Patient-specific risk factors associated with SSI include wound hypoxia, age, sex, diabetes mellitus, obesity, smoking, malnutrition, duration of hospital stay, cardiopulmonary dysfunction, and immunosuppression2.
Although the genetics of the microbes that cause disease have been extensively studied, little research has evaluated host (human) genetic predisposition to SSI. Personalized medicine is the concept of using individual genetic information to customize individual patient management.6 Single nucleotide polymorphisms (SNP) are stable genetic variations in base pairs present in a population with >1% frequency. SNPs provide much of the genetic basis for disease7. Personalized medicine is most advanced in the area of pharmacogenomics, where, for example, warfarin dosing can be predicted by genotype8. We postulate that there may be genetic variants that predict susceptibility to wound infection.
In order to evaluate whether there is a genetic susceptibility to SSI, we used a unique population-based resource consisting of a genealogy linked to medical data in Utah. We examined the genetic relationships among individuals identified in this Utah Population Database who also had evidence of being diagnosed with a SSI. Using two well-established and published methods, the Genealogical Index of Familiality and estimation of relative risks in relatives, we explored the hypothesis of a heritable predisposition to SSI.
The Utah Population Database (UPDB)
The Utah Population Database contains genealogical information for the Utah pioneer founders and over 2 million of their descendants9. The UPDB includes over 9 million individuals, most without genealogy data. We specifically selected those individuals for study who have both parents, all 4 grandparents, and at least 6 of their 8 great grandparents included in the UPDB. These strict criteria for genealogic data allowed us to match cases and controls with similar amounts of genealogy data.
Since 1994, all of the patient information from inpatient hospital and outpatient clinical visits from the University of Utah Health Sciences Center (UUHSC-serving 20% of Utah) has been stored in a data warehouse10-13. UUHSC patients have been record-linked to the Utah genealogy data so that the genetic relationships between individuals with a specific phenotype may be studied. The tools used to analyze these linked data allow for examination of numerous phenotypes and have been well reported10-13.
With the approval of both the oversight body of the Utah Population Database and the University of Utah institutional review board, we identified patients with diagnosed SSI based on ICD-9 codes. The U.S. Centers for Disease Control and Prevention defines a surgical site infection as: “an infection that occurs after surgery in the part of the body where the surgery took place. Surgical site infections can sometimes be superficial infections involving the skin only. Other surgical site infections are more serious and can involve tissues under the skin, organs, or implanted material.”4 This definition is not clearly duplicated in the International Classification of Disease, Ninth Revision (ICD-9) diagnostic codes used for medical records.
A major challenge for our study was the variable ways in which SSI are captured in the medical record. We analyzed a number of combinations of ICD-9 codes to balance sample size and specificity. ICD-9 codes identified as potentially useful in identifying patients diagnosed with SSI are displayed in Table 1. Table 2 lists the combinations of case definitions used, the ICD codes for each group and the number of cases we identified for each group using the strict genealogy requirements previously described.
Table 1
Table 1
ICD-9 Codes Considered for Analysis
Table 2
Table 2
Combinations of Codes Used for Analysis
Genealogical Index of Familiality
We used the Genealogical Index of Familiality (GIF) to test the hypothesis of no excess relatedness among affected individuals. This test was developed for the Utah Population Database9. The GIF test measures the average relatedness of the set of patients of interest (cases) and compares that to the measure of expected average relatedness estimated in the UPDB. Unlike relative risk, the GIF allows evaluation of both close and distant relationships between individuals.
The Malécot coefficient of kinship14, defined as the probability that randomly selected homologous genes from two individuals are identical by descent from a common ancestor, is used to measure pairwise relatedness in the GIF. For a sibling pair the coefficient is 0.25 (1/22), for a grandparent-grandchild pair it is 0.125 (1/23), for a first cousin pair 0.0625 (1/24), and so on. Pairs of individuals with a larger genetic distance have a smaller average relatedness measure.
The case-Genealogical Index of Familiality is defined as the average of the coefficients of kinship between all possible pairs of affected individuals (X105). The control-Genealogical Index of Familiality is the average of the coefficients of kinship between all possible pairs in a set of matched control individuals. The pairwise relatedness of the patients is compared with the distribution of the average pairwise relatedness statistics estimated for 1000 independent sets of matched controls, providing an empirical test of significance. Controls must be appropriately matched to cases for factors that might be associated with relatedness in Utah. The UUHSC provided us with the identification numbers of 20% of all UUHSC hospital patients, representing each sex, birth year and birthplace cohort, for use as controls. Each case and each potential control was assigned to one of 132 cohorts based on sex, 5-year birth year group, and birthplace (Utah or not). Cohort-matched controls were randomly selected from this set of hospital patients using a random number generator.
Due to the observation of both close and distant relationships, the overall GIF test is only a test of excess relatedness. Excess relatedness might be observed in the presence of only genetic factors, in the presence of only familial factors (e.g., shared environment), or in the presence of a combination of both genetic and familial factors. We have therefore extended the GIF test to include a comparison of excess relatedness that ignores close relationships (first and second-degree relatives); we term this the distant GIF (dGIF) test9. This allows us to test the hypothesis that significant excess relatedness is observed among distant relatives. Since distant relatives are not expected to share environmental risk factors any more than population-level sharing, observed excess relatedness supports the presence of predisposing genetic factors.
Relative Risks in Relatives
Relative risks for relatives of SSI cases were estimated by comparing the number of observed affected individuals among the relatives of those individuals to the expected number of affected individuals in the UPDB based on internal rates. The expected number of affected individuals was estimated by selecting matched hospital controls and counting the affected relatives of those controls who were also hospital patients. We randomly selected a hospital matched control for each case and then counted the number of affected relatives of each one of the matched controls without duplication; we repeated this 100 times for each case. Relative risk was estimated among relatives of the case individuals as a classic case-control relative risk. A Fisher exact test for a 2 × 2 table was used to determine the significance of the test of the null hypothesis relative risk = 1.0. Estimations of the confidence intervals for the relative risk were performed using the Agresti method.15 All statistical analysis was performed using software that was developed by investigators in the Division of Genetic Epidemiology / Department of Medicine at the University of Utah for the purpose of analysis involving the Utah Population Database and as described in previous studies9.
Genealogical Index of Familiality
Table 3 shows the overall GIF and the distant GIF results for the 3 different groups of SSI cases considered. The table displays the number of individuals affected, their average relatedness (overall case GIF), the mean overall control relatedness from the analysis of 1000 sets of matched controls (mean control GIF), the empirical p value of the comparison for all relationships (p), and the empirical p value for the distant GIF test (dGIF p).
Table 3
Table 3
GIF3 test for excess relatedness for SSI cases.
When we consider only the 350 SSI cases coded as non-healing surgical wound we do not see significant evidence for excess relatedness (Figure 1a). When our SSI definition is expanded from non-healing surgical wound to include prosthesis related infection or inflammation (n=651), the average relatedness increases (4.62 to 5.53) and there is significant evidence for excess relatedness when all relationships are considered, and also when all close relationships are ignored (Figure 1b). Finally when we expand our group again (Figure 1c), and now include postoperative infection/central venous catheter or other infusion (n=1650), the case average relatedness falls to 5.04 and we observe overall significant excess relatedness, but our evidence for excess distant relatedness is not significant (p=0.059).
Figure 1
Figure 1
Figure 1
Figure 1
a. Contribution to the GIF statistic by genetic distance
Relative Risk
Table 4 shows the estimated RRs for the first-, second-, and third-degree relatives of cases in each surgical site infection group. Significantly elevated RRs were not observed for first-, second-, or third-degree relatives of SSI cases defined by “non-healing surgical wound” only. When we expanded the group definition to include prosthesis, although all the estimated RR were > 1.0, only the third-degree relative risks were significantly elevated (RR = 1.62, p=0.03). Finally, when we further expanded the definition to include infections related to catheters or infusion, all the RR were > 1.0 and RRs for second- and third-degree relatives were significantly elevated.
Table 4
Table 4
Relative Risk estimates for relatives of SSI cases.
We report evidence for a familial/genetic contribution to SSI. We have attempted to identify SSI6 cases using 3 sequentially defined sets of codes, each more inclusive than the last. It is clear that the phenotype description is critical, although we saw similar results for all 3 phenotypes analyzed. The GIF analysis for each of the 3 defined groups of patients with SSI shows that the average relatedness observed for cases was significantly higher than expected. Only the group of SSI patients defined with inclusion of prosthesis, but not catheter/infusion showed significant excess clustering for all relationships and also for distant relationships only, although the other two SSI phenotype groups had similar dGIF (borderline significant) results, and the GIF distributions in Figures 1 show excess distant relationships for all 3 phenotype groups. As the sample size of each group increased, more relationships were observed and a smoother overall distribution for cases was observed. The GIF analysis of the largest set of SSI cases support a genetic contribution to predisposition to infection following surgery, with an excess of relationships even beyond third cousins (genetic distance = 8).
The RR analysis for the 3 phenotype groups of SSI patients showed varying results as well. For the smallest phenotype group (n=350), no first- or second-degree relatives were observed among relatives of matched controls. In the largest phenotype group considered (n=1650), in which many more relatives were considered, all of the RR estimates were > 1.0 and the second- and third-degree RR estimates were significantly elevated. Again, these results support a shared genetic component to SSI predisposition.
One major limitation to this study is the use of ICD-9 codes to identify patients diagnosed with SSI. Physicians use variable codes to record SSI and surveillance for SSI is often inadequate16. Patients may develop SSI after discharge. UUHSC participates in the National Surgical Quality Improvement Project and the aggressive surveillance required by the program may have improved capture of SSI for more recent years. Although it is likely our data understate the incidence of SSI, it is unlikely that infections are not captured in a way that would bias our results. The reduced sample size entailed by missed SSI may have limited our ability to identify significant results. Some patients may have been inaccurately coded as having SSI and the codes we used would have captured some patients who did not in fact have SSI. Again, it is unlikely that there was a bias in how these data were included and excluded that would have changed our results. Because we are using a Utah population resource for analysis, SSI patients whose genealogy data is not complete in the UPDB and individuals diagnosed with a SSI before UUHSC data availability are also censored. We do not anticipate that this censoring results in any bias as it applies equally to all individuals whether they are cases or controls. Within the context of the goal of our study, our data support the idea that evaluation of individuals within affected pedigrees to determine which genes contribute to susceptibility to SSI is likely to be a fruitful avenue of research.
Another limitation of our study is the inability to control for confounding factors such as diabetes, obesity, smoking, need for multiple operations, need for higher risk operations, malnutrition, cardiopulmonary dysfunction, and use of immunosuppressant drugs. Some of these confounders have or may have a genetic basis, which could contribute to our findings.
Although the use of ICD-9 codes is limitation of our study, the data are of sufficient quality to support further investigation into the genetics of SSI susceptibility. The etiology of increased predisposition to SSI demonstrated in this study is likely both genetic and environmental. Our study does not define the genes that increase SSI risk. Likely candidates for a predisposition to SSI include SNPs related to impaired inflammation. Genes related to inflammation that have known SNPs include TNF-alpha, IL-1, IL-6, IL-10, heat shock genes, and lipopolysaccharide binding protein.7,17 Certain alleles of these genes are associated with greater risk of sepsis and / or of death from sepsis. Sepsis and SSI are clearly different disease processes, but inflammation plays a major role in each, so it is reasonable to speculate that these SNPs are also pertinent to SSI. Another candidate gene is the phagosomal oxidase (phox), which converts oxygen to superoxide, and plays a key role in host defense18. SNPs in phox cause Chronic Granulomatous Disease19, a rare condition that manifests early in childhood and in which patients develop severe recurrent infections, often of the skin, because of the inability to generate superoxide. The genetics of these catastrophic mutations have been studied in detail, but other genetic variations in phox have not been evaluated. It is plausible that SNPs that only reduce superoxide production may cause susceptibility to SSI without overt disease. Other genetic variants could predispose to disorders that require surgery or a propensity towards obesity, diabetes, connective tissue disorders, or other risk factors for SSI.
Our data support a genetic contribution to susceptibility to SSI. The next step is to define which genes are involved. Using the UPDB and with appropriate IRB approval we plan to identify, recruit, and obtain blood samples from members of the high-risk pedigrees identified in these analyses. This will allow us to genotype the most informative pedigrees and use linkage analysis as well as sequencing to identify candidate genes that may predispose patients to SSI and other infections.
Acknowledgments
L-C-A acknowledges support from the Huntsman Cancer Foundation.
Partial support for all data sets with in the Utah Population Database (UPDB) was provided by Huntsman Cancer Institute, University of Utah and the Huntsman Cancer Institute’s Cancer Center Support grant, P30 CA42014 from National Cancer Institute.
National Library of Medicine grant LM009331 (to Lisa Cannon Albright)
Abbreviations
GIFGenealogical Index of Familiality
ICD 9International Classification of Disease, Ninth Revision
RRRelative Risk
SSISurgical Site Infection
UPDBUtah Population Database
UUHSCUniversity of Utah Health Sciences Center

Footnotes
Preliminary results were presented at the Wound Healing Society Annual Meeting in Orlando, FL, April 2010. Final results presented at the International Anesthesia Research Society meeting in Vancouver, BC, May 2011.
Conflict of Interest: None of the authors reports any financial relationships that may pose a conflict of interest.
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