Search tips
Search criteria 


Logo of scirepAboutEditorial BoardFor AuthorsScientific Reports
Sci Rep. 2013; 3: 1224.
Published online 2013 February 6. doi:  10.1038/srep01224
PMCID: PMC3565454

Post-natal treatment by a blood-brain-barrier permeable calpain inhibitor, SNJ1945 rescued defective function in lissencephaly


Toward a therapeutic intervention of lissencephaly, we applied a novel calpain inhibitor, SNJ1945. Peri-natal or post-natal treatment with SNJ1945 rescued defective neuronal migration in Lis1+/− mice, impaired behavioral performance and improvement of 18F-FDG uptake. Furthermore, SNJ1945 improved the neural circuit formation and retrograde transport of NFG in Lis1+/− mice. Thus, SNJ1945 is a potential drug for the treatment of human lissencephaly patients.

LIS1 encodes a protein carrying seven WD repeats1,2 that was first identified as a non-catalytic subunit of platelet activating factor-acetylhydrolase (Pafah1b1)3. Numerous studies to address the molecular function of LIS1 led to the conclusion that LIS1 is essential for the proper regulation of cytoplasmic dynein4,5,6. We previously reported that calpain inhibition rescued defective phenotypes that are observed in Lis1+/− mice7, suggesting that calpain inhibitors are a potential therapy for the treatment of lissencephaly. Here, we applied a novel blood-brain barrier (BBB) permeable calpain inhibitor, SNJ1945 for the treatment of lissencephaly8,9,10.


SNJ1945 rescued defective distribution of cytoplasmic dynein and membranous components in the cell and defective migration in Lis1+/− neurons

In vitro administration of SNJ1945 protected LIS1 from proteolysis, resulting in the augmentation of LIS1 levels in Lis1+/− mouse embryonic fibroblast (MEF) cells and leading to rescue of the aberrant distribution of cytoplasmic dynein and intracellular components including mitochondria and β-COP positive vesicles (Supplementary Fig. 1a–e). SNJ1945 also rescued defective distribution of cytoplasmic dynein and membranous components in human fibroblasts from an isolated lissencephaly sequence (ILS) patient, suggesting that SNJ1945 will be similarly effective in the human (Supplementary Fig. 2a–e). In addition, SNJ1945 improved neuronal migration of Lis1+/− cerebellar granular neurons (Supplementary Fig. 3). Notably, administration of even large doses did not result in obvious adverse effects on granular neurons (Supplementary Fig. 4). Oral administration of SNJ1945 to pregnant dams resulted in substantial increases of LIS1 levels in the brain of fetuses, as did oral administration directly to peri-natal offspring or adults (Fig. 1). Importantly, LIS1 levels increased in the brain three weeks after birth (Fig. 1c, f), indicating that indeed SNJ1945 passed through the BBB and inhibited proteolytic degradation of LIS1. Quantitative determination of drug concentrations in tissue homogenates via liquid chromatography-tandem mass spectrometry (LC-MS/MS) is commonly conducted using the standards. We measured the concentration of SNJ1945 in the brain using LC-MS/MS (Supplementary table 1). LC-MS/MS analysis indicated the brain distribution of SNJ 1945.

Figure 1
Rescue of defective corticogenesis in Lis1+/− mice by SNJ1945.

To demonstrate whether there was therapeutic benefit in vivo, we designed four different administration approaches (Fig. 2a): (1) intra-peritoneal injection starting at E9.5 (100 μg/g) followed by oral administration after birth (200 μg/g), (2) oral administration starting at E9.5 (200 μg/g) followed by oral administration after birth (200 μg/g), (3) oral administration starting in the peri-natal period (200 μg/g) and (4) oral administration starting ten days after birth (200 μg/g). We previously reported a mild reduction of the density of cells in the neocortex of the Lis1+/− mice11. At E15.5 when later migrating neurons are generated, a significant acceleration of apoptotic cell death in the ventricular zone was observed11. These results prompted us to investigate apoptotic cell death during corticogenesis by TUNEL staining at E15.5 (Fig. 2b). In Lis1+/− mice, apoptotic cell death was clearly increased11. In contrast, administration of SNJ1945 suppressed apoptotic cell death in Lis1+/− mice (Fig. 2b). We also examined whether administration of SNJ1945 had any effects on mitotis, since LIS1 is essential for mitotic cell division12 and neuroepithelial stem cell proliferation13. At E13.5, we performed BrdU pulse labeling and found that BrdU incorporation was not significantly different among the five groups (Supplementary Fig. 5), indicating that there was no measureable effect of SNJ1945 on proliferation of neuroepithelial stem cells. We next examined the effect of SNJ1945 on the cortical and hippocampal layering of neurons. Lis1+/− mice exhibited laminar splitting and discontinuities of pyramidal cells in the CA3 and CA2 region of the hippocampus (Fig. 2c), as we previously demonstrated12. After administration of SNJ1945 in utero, Lis1+/− mice also displayed splitting and discontinuities in the pyramidal cell layer of the hippocampus, but these defects were markedly improved compared with untreated mice (Fig. 2c and Supplementary Fig. 6a–c). To examine cortical lamination, we analyzed Brn-1 immunoreactivity, to label neurons of layer 2 and 314. In Lis1+/− mice, Brn-1 positive cells (which migrate at later stages) exhibited a broader distribution compared to Lis1+/+ mice. Administration of SNJ1945 resulted in more tightly packed layer 2/3 neurons in Lis1+/− mice (Fig. 2d), suggesting that neuronal migration in the cortex was also improved by the inhibition of LIS1 degradation. In both the hippocampus and cortex, oral administration starting postnatally was also partially effective but less effective than when treatment started in utero (Fig. 2c, d and Supplementary Fig. 6a–c). To confirm that the morphological defects observed in Lis1+/− mice were improved by SNJ1945 treatment, we performed quantitative BrdU birthdating analysis. In Lis1+/− mice, the distribution of labeled cells was shifted downward toward the ventricular zone in the cortex, and BrdU-labeling was more diffusely localized (Fig. 2e), as we previously demonstrated12. These migration defects associated with the disruption of Lis1 were partially rescued in the presence of SNJ1945 (Fig. 2e). Thus, we concluded that oral administration or intra-peritoneal injection of SNJ1945 in utero are effective in rescuing defective neuronal migration. Importantly, oral administration commencing postnatally was also partially effective, resulting in improvement of brains structure including hippocampus and cortex. In contrast, oral administration starting ten days after birth did not result in any obvious benefits, suggesting that some fraction of neurons was still migrating at the time of birth15, which was essentially complete by ten days after birth.

Figure 2
Rescue of defective corticogenesis in Lis1+/− mice by SNJ1945.

SNJ 1945 partially rescued impaired motor behavior

Lis1+/− mice displayed abnormal behavior and impaired spatial learning7,16. Therefore, we examined whether administration of SNJ1945 to Lis1+/− mice is effective in improving motor behavior compared to untreated Lis1+/− mice. Body weight and temperature were not significantly different among groups, (Supplementary Table 1). As shown in our previous report, Lis1+/− mice exhibited shorter wire-hang latency compared with wild-type mice, and this decreased latency was rescued by SNJ1945 treatment (Fig. 3a). This improvement was most significant in the group in which treatment was started from fetal times (Lis1+/−E9.5). Next, we examined rotarod performance. The latency to fall for the SNJ1945-minus group was significantly less than wild type mice, as we previously reported7. Impaired performance on the rotarod test was significantly improved in the SNJ1945-treated groups (Fig. 3b, Supplementary Fig. 7). This functional improvement was also observed not only in the Lis1+/−E9.5 group, but also in the Lis1+/−P0 group, in which treatment was started perinatally. In our previous report, we demonstrated that in utero treatment of a calpain inhibitor from fetal stages improved gait performance. Consistent with this finding, administration of SNJ1945 significantly improved the percent of stride in swing and swing to stance ratios in the Lis1+/−E9.5 group (Fig. 3c). Most importantly, these improvements were also observed in the Lis1+/−P0 and Lis1+/−P10 groups. The Porsolt forced swim test is the most commonly used test for assessment of depression-like behavior in animal models. Mice were placed in an inescapable cylinder half-filled with water to induce the behavioral state of despair. We measured periods of immobility, in which longer immobile times indicated higher degrees of despair (Fig. 3d). We found that Lis1+/− mice displayed significantly increased immobile times compared with controls. SNJ1945 treated Lis1+/− groups displayed immobile times intermediate between Lis1+/+ mice and Lis1+/− mice. In particular, improvement close to normal levels was observed in the Lis1+/−E9.5 group. Our findings suggest that SNJ1945 treatment can rescue depression-like status in Lis1+/− mice. It is possible that the rescue of this behavioral abnormalities in Lis1+/− mice by SNJ1945 treatment results from the improved coordination of motor function by SNJ1945. Another possibility is that treatment of SNJ1945 rescued depression-like status in Lis1+/− mice, which led to improvement of behavioral performance.

Figure 3
Mouse behavior analysis.

Small-animal positron emission tomography (PET) was used for evaluation of brain functional improvement by SNJ1945 treatment

We further addressed whether the rescue of defective behaviors in Lis1+/− mice by SNJ1945 treatment was associated with the improvement of brain function. Small-animal imaging studies using PET have been increasingly applied in murine models for drug discovery1. We here employed PET imaging with 2-deoxy-2-18F-fluoro-D-glucose (FDG) to evaluate brain neural activity based on glucose metabolism17. We found aberrations in FDG uptake patterns in Lis1+/− mice that responded to SNJ1945 treatment. PET scans with FDG in human lissencephaly patients demonstrated two layers in the cerebral cortex that could be differentiated based on metabolic activity18, corresponding to the inner cellular layer of the lissencephalic cortex and the molecular, outer cellular, and cell-sparse layers, respectively18. In our PET imaging, we were not able to observe such a layered pattern in Lis1+/− mice due to the limitation of spatial resolution (Fig. 4a). Lis1+/− mice displayed similar glucose utilization in the cortex, hippocampus and cerebellum compared to wild type mice (Supplementary Fig. 8). Interestingly, we found significantly reduced glucose utilization in the basal forebrain, hypothalamus and amygdala (Fig. 4a, b). Most importantly, these reductions in FDG uptake were reversed by the treatment with SNJ1945 (Fig. 4a, b). The recovery of glucose metabolism is consistent with the improvement of behavioral performance by treatment with SNJ1945.

Figure 4
Brain metabolism: 18F-FDG PET scanning.

SNJ1945 improved neural network formation and facilitated clustering of GABA receptors in amygdala

Because behaviors and brain metabolism are highly linked to the interactive dynamics of neural circuits and synaptic formation in the brain, it is possible that SNJ1945 also rescued defective network formation and synaptogenesis in Lis1+/− mice, which might account for the functional improvement of behavioral performance and FDG uptake even without migratory rescue (such as after treatment commencing at P10). To address this question, we injected TdTomato19 into embryos to visualize neural networks at E16.520. In particular, we have focused on neural networks in amygdala (Fig. 5a). While there were no notable differences in the size of the soma, Lis1+/− mice displayed a striking simplification of dendrites compared to Lis1+/+ mice (Fig. 5b, c, d, Supplementary Fig. 9). Branching and length of each branch were decreased to approximately 29% and 27%, respectively. Importantly, the poor development of dendritic arbors and decreased each length in Lis1+/− mice were rescued by SNJ1945 treatment (Fig. 5b, c, d, Supplementary Fig. 9), suggesting that neurons in the amygdala partially maintain plasticity, and proper network formation was facilitated by the treatment after P10.

Figure 5
Examination of neuronal networks and clustering of GABA receptors.

The amygdala has an important role in processing emotional information21,22,23. Inappropriate processing within the amygdala is thought to induce anxiety disorders. Benzodiazepines, which act specifically on GABAA receptors, are commonly used as anxiolytics. This implies that GABAergic synapses within the amygdala may have an important role in inducing or compensating for these disorders. GABAA receptors are clustered at synaptic sites to achieve a high density of postsynaptic receptors opposite the input axonal terminals. This allows for an efficient propagation of GABA mediated signals, which mostly result in neuronal inhibition. A key organizer for GABAA receptors is gephyrin that forms oligomeric superstructures beneath the synaptic area24,25. In addition, gephyrin plays a crucial role in synaptic dynamics and is a platform for multiple protein-protein interactions and bringing receptors. Thus, we examined the distribution of gephyrin as an indicator for functional GABAA receptors in amygdala26. In Lis1+/+ mice, somata and proximal dendrites of amygdala neurons exhibited a variety of gephyrin clusters from very small round puncta to large and bright clusters (Fig. 5b). While Lis1+/− mice displayed similar pattern of gephyrin clusters with Lis1+/+ mice, they were significantly decreased (Fig. 5b, e). Decreased gephyrin clusters in Lis1+/− mice were rescued by SNJ1945 treatment commencing at P10 (Fig. 5b, e). Thus, we concluded that post-natal treatment of SNJ1945 was effective for recovery of defective network formation and decreased receptor distribution in amygdala.

SNJ1945 augmented retrograde transport of nerve growth factor (NGF) in dorsal root ganglia (DRG) neurons

Neural growth factors are crucially important for activity-dependent plastic changes in synaptic strength and network refinement. We assumed that the SNJ1945 dependent rescue of neural network formation and receptor distribution might be attributable to the recovery of retrograde transport of neural growth factors. Retrograde axonal transport of nerve growth factor (NGF) signals is critical for the survival, differentiation, and maintenance of peripheral sympathetic and sensory neurons and basal forebrain cholinergic neurons. To examine retrograde transport of NGF, we used quantum dots (Qd-NGF) to track retrograde transport of NGF in cultures of mouse DRG neurons. Using pseudoTIRF microscopy, we tracked the movement of Qd-NGF in live DRG neurons in real time27. We applied non-compartmentalized cultures of DRG neurons, which displayed both directional movements of Qd-NGFs. Live-cell imaging revealed that Qd-NGFs were internalized at axon terminals and transported in a retrograde fashion to cell bodies in DRG neurons from Lis1+/+ mice (Supplementary movie 1). Importantly, Qd-NGFs were internalized, but accumulate aberrantly at tips of DRG neurons from Lis1+/− mice (Fig. 6a, b). This aberrant accumulation was rescued by treatment of SNJ1945 (Fig. 6a, b). Our observations were similar with transport defects peroxisomes and endosomes in the genetic absence of Lis1/nudF of filamentous fungus Aspergillus nidulans28. Next, we characterized the transport of Qd-NGF containing endosomes. Kymographs from time-lapse videos of Qd-NGFs indicated that the retrograde transport of Qd-NGF containing endosomes moved in a stop-and-go manner (Fig. 6c, d, Supplementary movie 1). Strikingly, we found that the frequency of retrograde transport of Qd-NGF containing endosomes was significantly decreased in DRG neurons from Lis1+/− mice (Fig. 6c, d, e, Supplementary movie 2), whereas the frequency of anterograde transport of Qd-NGF containing endosomes was not affected (Supplementary Fig. 9). In clear contrast, the velocity of retrograde transport of Qd-NGF containing endosomes was intact in DRG neurons from Lis1+/− mice (Fig. 6f, g), which was also consistent with Aspergillus nidulans28. We next examined the effect of SNJ1945 in the decreased frequency of the retrograde transport. Importantly, the treatment of SNJ1945 clearly recovered the defective retrograde transport of Qd-NGF containing endosomes (Fig. 6c, d, e, Supplementary movie 3.). Presumably, the protection of LIS1 degradation by SNJ1945 restored proper dynein distribution, resulting in the recovery of retrograde transport of Qd-NGF containing endosomes, which may stimulate network formation and receptor distribution.

Figure 6
Retrograde transport of NGF in DRG neurons.


SNJ1945 is permeable to the BBB, and was effective in rescuing defects in Lis1+/− mice after treatment commenced perinatally. These findings suggest that SNJ1945 may be considered for the treatment of lissencephaly patients postnatally. In support of this, we demonstrated that SNJ1945 improved behavioral performances and brain glucose metabolism after treatment ten days after birth without histological rescue of brain disorganization. We also demonstrated that SNJ1945 stimulated network formation and receptor distribution, explaining functional rescue by SNJ1945. These functional rescues are partially attributable to restoration of growth signal, characterized by the recovery of retrograde transport of Qd-NGF containing endosomes. These findings support a potential therapeutic approach with a novel calpain inhibitor, SNJ1945, in the human ILS patient that has a LIS1 mutation.


BrdU birthdating and proliferation studies

All mouse experiments were performed under the approval from the experimental animal committee of Osaka City University Graduate School of Medicine or the approval of the experimental animal committee of Osaka City University Graduate School of Medicine, National Institute for Physiological Sciences and Fujita Health University.

For bromodeoxyuridine (BrdU) experiments, pregnant dams (E15.5) were injected with BrdU (50 μg/g, i.p.), and the distribution of BrdU-positive cells was determined at P5. For pulse labeling to examine proliferation of neuroepithelial stem cell, pregnant dams (E13.5) were injected with BrdU (150 μg/g, i.p.). Subsequently, the distribution of BrdU-positive cells was determined one hour after injection. The incorporation of BrdU in cells was detected with a mouse anti-BrdU monoclonal primary antibody (Roche) followed by an alkaline phosphatase-conjugated secondary antibody (Boehringer Mannheim). We analyzed three independent mice for each genotype.

Histological examination and immunohistochemistry

After perfusion with 4%PFA fixative, tissues from wild type and mutant mice were embedded in paraffin and sectioned at 5 μm thickness. After deparaffination, endogenous peroxidase activity was blocked by incubating the sections in 1.5% peroxide in methanol for 20 min. The sections were then boiled in 0.01 M/liter citrate buffer, pH 6.0, for 20 min and cooled slowly. Before staining, the sections were blocked with rodent block (LabVision) for 60 min. The sections were washed in PBS and incubated with an anti-Brn-1 antibody (Santa Cruz).

Cell culture and immunocytochemistry

Human fibroblasts were grown in D-MEM supplemented with 10% FBS. To inhibit calpain, cells were incubated with 200 μM SNJ1945 or control DMSO for 2 hrs. Cells were fixed in 4% PFA in PBS followed by permealization with 0.2% Triton X-100 in PBS. Coverslips were blocked for one hour with Block Ace (Yukijirushi) in PBS supplemented with 5% BSA, and were incubated for 1 hr in primary antibody, washed, and incubated for 1 hr using Alexa 546-conjugated secondary antibodies (Molecular Probes). Primary antibodies were an anti-βCOP antibody (Sigma) and an anti-DIC1 antibody (Chemicon).

Behavioral analysis

Lis1+/+ mice and Lis1+/− mice that were treated with and without SNJ1945 were used for behavioral experiments, as described in the figure legend for Figure 2a. Lis1+/− mice had a single Lis1 mutant allele. In this study mice were on an FVB background. All behavioral tests were carried out with male mice that were at least 9 weeks old at the start of testing. Raw data from the behavioral tests, the date on which each experiment was performed, and the age of the mice at the time of the experiment are shown in the mouse phenotype database ( Mice were group-housed (four mice per cage) in a room with a 12 h light/dark cycle (lights on at 7:00 a.m.) with access to food and water ad libitum. The room temperature was kept at 23 ± 2°C. Behavioral testing was performed between 9:00 a.m. and 6:00 p.m. After the tests, all apparatus were cleaned with diluted sodium hypochlorite solution to prevent a bias due to olfactory cues. Three independent groups of mice were prepared for behavioral tests. One group consisted of equal numbers of mice. Lis1+/+; Lis1+/+ mice without treatment, Lis1+/−; Lis1+/− mice without treatment, Lis1+/−E9.5; Lis1+/− mice with oral administration from from E9.5 (200 μg/g) followed by oral administration after birth (200 μg/g), Lis1+/−P0; Lis1+/− mice with oral administration from peri-natal period (200 μg/g) Lis1+/−P10; Lis1+/− mice with oral administration from ten days after birth (200 μg/g). Experiments were done in the following sequences; the first group (12 each): the general health and neurological screen including wire hang test (GHNS), light/dark transition (LD), rotarod (RR) and gait analysis (GA); the second group (16 each): GHNS, LD, RR and GA; the third group (24 each): GHNS, LD, open field (OF), elevated plus maze (EP), hot plate (HP), one-chamber social interaction test (SI), RR, Crawley's sociability and preference for social novelty test (CSI), startle response/prepulse inhibition test (PPI), Porsolt forced swim test (PS), fear conditioning test (FZ), tail suspension test (TS), and social interaction test in home cage (HC-SI). Behavioral data were obtained automatically by applications based on the public domain Image J program and modified for each test by Tsuyoshi Miyakawa (available through O'HARA & CO., Tokyo, Japan)29. Each behavioral test was separated from each other at least by 1 day.

Briefly, the rotarod test, using an accelerating rotarod (UGO Basile Accelerating Rotarod), was performed by placing mice on rotating drums (3 cm diameter) and measuring the time each animal was able to maintain its balance on the rod. The speed of the rotarod accelerated from 4 to 40 rpm over a 5-min period. Gait analysis was performed using ventral plane videography as described. Mice were placed on the treadmill belt that moves at a speed of 24.7 cm/s. Digital video images of the underside of mice were collected at 150 frames per second. The paw area indicates the temporal placement of the paw relative to the treadmill belt. The color images were converted to their binary matrix equivalents, and the areas (in pixels) of the approaching or retreating paws relative to the belt and camera were calculated throughout each stride. Plotting the area of each digital paw print (paw contact area) imaged sequentially in time provides a dynamic gait signal, representing the temporal record of paw placement relative to the treadmill belt. For Porsolt forced swimming test, the apparatus consisted of four plastic cylinders (20 cm height × 10 cm diameter). The cylinders were filled with water (23°C) up to a height of 7.5 cm. Mice were placed into the cylinders, and their behavior recorded over a 10-min test period. Data acquisition and analysis were performed automatically, using Image PS software (see above). All behavioral testing procedures were approved by the Animal Care and Use Committee of National Institute for Physiological Sciences and Fujita Health University.

MicroPET scan and data analysis

PET imaging data were obtained in male mice (20–30 g) using a small animal PET camera (microPET Focus-220, Simens Medical Systems), which has a transaxial resolution of 1.4 mm in full width at half-maximum. Data were acquired in a 128 × 128 × 95 matrix with a pixel of 0.475 mm and a slice thickness of 0.796 mm. Before PET scanning, mice were intravenously injected with 18F-FDG (approximately 0.5 MBq/g B.W.) through a cannula inserted into the tail vein and were kept in their home cage for 30 min for the 18F-FDG uptake under freely moving condition. Subsequently, the mice were placed in the small-animal PET scanner under isoflurane anesthesia (4% for induction and 1.5% for maintenance) with O2 and N2O gas. Static acquisitions were performed during 30 min. PET images were reconstructed using a filtered backprojection (FBP) algorithm. The image data acquired from microPET were analyzed by ASIPro VM (ver. 6.0, Concorde Microsystems Inc.) and PMOD (ver. 3.4, PMOD Technologies Ltd.) software. The PET and magnetic resonance (MR) images were co-registered using a PMOD software. MR images were obtained from Lis1+/+ mice and Lis1+/− mice used for the PET study under isoflurane anesthesia with a 7 tesla MR scanner (BioSpec 70/20, Bruker). Volumetric regions of interest were placed on the several brain regions (striatum, cerebral cortex, hippocampus, thalamus, cerebellum, hypothalamus, amygdala, basal forebrain and septum, brain stem, midbrain, superior colliculi) based on the MR images. Relative regional 18F-FDG uptake was determined by normalized count data to those in the whole brain. Each value was presented as mean ± SEM. Statistical analysis was performed using the SPSS Statistics Student software. Data were analyzed using one-way ANOVA followed by post hoc Tukey's test for comparison among groups. Significance threshold was assumed at P < 0.05.

In utero transfection

Expression vectors were introduced into fetal brains by an in utero electroporation-mediated gene transfer method20. Briefly, pregnant mice were deeply anesthetized on E16.5, and the uterine horns were exposed. Approximately 2 μl of TdTomato plasmid solution was injected into the lateral ventricle from outside the uteri with a glass micropipette (GD-1.5, Narishige, Tokyo, Japan). Each embryo in the uterus was then placed between the tweezers-type electrodes described above and electronic pulses (45 V; 50 msec duration) were applied five times at intervals of 950 msec (GUY21, Bexco ltd). The uterine horns were then placed back into the abdominal cavity to allow the embryos to continue normal development. Histological examination was performed 5 days after in utero injection (P2-P3). Histological examination was performed 35 days after in utero injection (P30). SNJ1045 as applied from P10 by oral administration.

Examination of retrograde transport of NGF by pseudoTIRF microscope and live imaging

NGF was conjugated with Qd655 via carboxyl group substitution by using the coupling reagent 1-ethyl-3-(3-dimethylaminopropyl) -carbodiimide (EDAC) (Pierce Biotech, Rockford, IL). An inverted microscope (Olympus 1 × 71) was modified for pseudoTIRF illumination. The laser beam (488 nm) was focused at the back focal plane of the objective lens (ApoN×60, 1.49 Oil, Olympus). The incident angle was adjusted to be slightly smaller than the critical angle so that the laser beam could penetrate ≈1 μm into the aqueous solution. To image transport of Qd-NGF in live neurons, DRG neurons were incubated with Qd-NGF. Fluorescence images were filtered with a Qd655/15 emission filter. Time-lapse images were acquired by using an EMCCD camera (ImageM, Hamamatsu photonics) at the speed of 5–10 frames per second.

LC-MS/MS analysis

The SNJ1945 concentration in the brain was determined by turbo ion spray on an API 4000 triple-quadrupole mass spectrometer (Applied Biosystems) equipped with a turbo ion spray source using multiple reaction monitoring (MRM). Chromatography was performed on a NANOSPACE SI-2 HPLC system (Shiseido) with Shiseido Capcell pak C18 MG-II column. The extraction of SNJ1945 from the brain and the measuring condition were described in the literature9.

Author Contributions

S.H. performed mouse histological examination and mouse behavioral analyasis. M.Y. performed mouse histological examination. K.T., S.H. and T.M. performed mouse behavioral analyasis (Figure 3). Y.K. and Y.T. performed PET analysis (Figure 4). K.K., Y.O., H.W. and M.S. performed neural circuit characterization (Figure 5, 6). M.A. provided us SNJ1945. K.H., M.A., K.T. and M.K. provided us a fibroblast cell line from the human lissencephaly patient. A.W.-B. and S.H. organized experiments and wrote a manuscript.

Supplementary Material

Supplementary Information:

Supplementary figures

Supplementary Information:

Supplementary movie 1

Supplementary Information:

Supplementary movie 2

Supplementary Information:

Supplementary movie 3


We thank Azusa Inagaki, Kaori Nakakubo, Yukimi Kira and Yoriko Yabunaka for technical support, Hiromichi Nishimura and Keiko Fujimoto for mouse breeding. This work was supported by Grant-in-Aid for Scientific Research from the Ministry of Education, Science, Sports and Culture of Japan from the Ministry of Education, Science, Sports and Culture of Japan to Shinji Hirotsune and Knowledge Cluster Initiative (Stage-2) Research Foundation to Shinji Hirotsune. This work was also supported by Takeda Science Foundation and the Sumitomo Foundation to Shinji Hirotsune and NIH grants NS41030 and HD47380 to Anthony Wynshaw-Boris. This work was also supported in part by Grant-in-Aid for Scientific Research(B) of Japan Society for the Promotion of Science (JSPS)(#22390056 to Masami Yamada), Adaptable and Seamless Technology Transfer Program (A-STEP) through Target-driven R&D, Japan Science and Technology Agency (#AS231Z02224G to Masami Yamada), Grant-in-Aid for Scientific Research on Innovative Areas of The Ministry of Education, Culture, Sports, Science and Technology (MEXT)(#11001981 to Masami Yamada) and The Uehara Memorial Foundation (to Masami Yamada). This work was also supported by KAKENHI (Grant-in-Aid for Scientific Research) on Young Scientists A (16680015), Scientific Research (B) (21300121, 21390069), Exploratory Research (19653081), Integrative Brain Research (IBR-shien), and Innovative Areas (Comprehensive Brain Science Network) from the Ministry of Education, Science, Sports and Culture of Japan (MEXT) of Japan, grant from Neuroinformatics Japan Center (NIJC), grants from CREST of Japan Science and Technology Agency (JST), and the Funding Program for Next Generation World-Leading Researchers (Next Program). This work was also supported by the Multidisciplinary program for elucidating the brain development from molecules to social behavior (Fukui Brain Project) and the Grants-in-Aid for Scientific Research and Strategic Research Program for Brain Sciences (“integrated research on neuropsychiatric disorder”) by the Ministry of Education, Culture, Sports, Science and Technology of Japan to Makoto Sato. We declare no conflicts of interests.


  • Beckmann N. et al. In vivo mouse imaging and spectroscopy in drug discovery. NMR Biomed 20, 154–185 (2007). [PubMed]
  • Reiner O. et al. Isolation of a Miller-Dieker lissencephaly gene containing G protein beta-subunit-like repeats. Nature 364, 717–721 (1993). [PubMed]
  • Hattori M., Adachi H., Tsujimoto M., Arai H. & Inoue K. Miller-Dieker lissencephaly gene encodes a subunit of brain platelet-activating factor acetylhydrolase [corrected]. Nature 370, 216–218 (1994). [PubMed]
  • Vallee R. B., Tai C. & Faulkner N. E. LIS1: cellular function of a disease-causing gene. Trends Cell Biol 11, 155–160 (2001). [PubMed]
  • Wynshaw-Boris A. Lissencephaly and LIS1: insights into the molecular mechanisms of neuronal migration and development. Clin Genet 72, 296–304 (2007). [PubMed]
  • Yamada M. et al. LIS1 and NDEL1 coordinate the plus-end-directed transport of cytoplasmic dynein. Embo J 27, 2471–2483 (2008). [PubMed]
  • Yamada M. et al. Inhibition of calpain increases LIS1 expression and partially rescues in vivo phenotypes in a mouse model of lissencephaly. Nat Med 15, 1202–1207 (2009). [PMC free article] [PubMed]
  • Koumura A. et al. A novel calpain inhibitor, ((1S)-1((((1S)-1-benzyl-3-cyclopropylamino-2,3-di-oxopropyl)amino)carbonyl)-3-methylbutyl) carbamic acid 5-methoxy-3-oxapentyl ester, protects neuronal cells from cerebral ischemia-induced damage in mice. Neuroscience 157, 309–318 (2008). [PubMed]
  • Shirasaki Y., Yamaguchi M. & Miyashita H. Retinal penetration of calpain inhibitors in rats after oral administration. J Ocul Pharmacol Ther 22, 417–424 (2006). [PubMed]
  • Oka T. et al. Amelioration of retinal degeneration and proteolysis in acute ocular hypertensive rats by calpain inhibitor ((1S)-1-((((1S)-1-benzyl-3-cyclopropylamino-2,3-di-oxopropyl)amino)carbony l)-3-methylbutyl)carbamic acid 5-methoxy-3-oxapentyl ester. Neuroscience 141, 2139–2145 (2006). [PubMed]
  • Sasaki S. et al. Complete loss of Ndel1 results in neuronal migration defects and early embryonic lethality. Mol Cell Biol 25, 7812–7827 (2005). [PMC free article] [PubMed]
  • Hirotsune S. et al. Graded reduction of Pafah1b1 (Lis1) activity results in neuronal migration defects and early embryonic lethality. Nat Genet 19, 333–339 (1998). [PubMed]
  • Yingling J. et al. Neuroepithelial stem cell proliferation requires LIS1 for precise spindle orientation and symmetric division. Cell 132, 474–486 (2008). [PMC free article] [PubMed]
  • McEvilly R. J., de Diaz M. O., Schonemann M. D., Hooshmand F. & Rosenfeld M. G. Transcriptional regulation of cortical neuron migration by POU domain factors. Science 295, 1528–1532 (2002). [PubMed]
  • Manent J. B., Wang Y., Chang Y., Paramasivam M. & LoTurco J. J. Dcx reexpression reduces subcortical band heterotopia and seizure threshold in an animal model of neuronal migration disorder. Nat Med 15, 84–90 (2009). [PMC free article] [PubMed]
  • Paylor R. et al. Impaired learning and motor behavior in heterozygous Pafah1b1 (Lis1) mutant mice. Learn Mem 6, 521–537 (1999). [PubMed]
  • Mizuma H., Shukuri M., Hayashi T., Watanabe Y. & Onoe H. Establishment of in vivo brain imaging method in conscious mice. J Nucl Med 51, 1068–1075 (2010). [PubMed]
  • Pfund Z. et al. Lissencephaly: fetal pattern of glucose metabolism on positron emission tomography? Neurology 55, 1683–1688 (2000). [PubMed]
  • Palmer A. E. & Tsien R. Y. Measuring calcium signaling using genetically targetable fluorescent indicators. Nat Protoc 1, 1057–1065 (2006). [PubMed]
  • Takitoh T. et al. Activation of Aurora-A Is Essential for Neuronal Migration via Modulation of Microtubule Organization. J Neurosci 32, 11050–11066 (2012). [PubMed]
  • Davis M., Walker D. L. & Myers K. M. Role of the amygdala in fear extinction measured with potentiated startle. Ann N Y Acad Sci 985, 218–232 (2003). [PubMed]
  • LeDoux J. E. Emotion circuits in the brain. Annu Rev Neurosci 23, 155–184 (2000). [PubMed]
  • Pare D., Quirk G. J. & Ledoux J. E. New vistas on amygdala networks in conditioned fear. J Neurophysiol 92, 1–9 (2004). [PubMed]
  • Takahashi H. et al. Selective control of inhibitory synapse development by Slitrk3-PTPdelta trans-synaptic interaction. Nat Neurosci 15, 389–398, S381–382 (2012). [PMC free article] [PubMed]
  • van Versendaal D. et al. Elimination of inhibitory synapses is a major component of adult ocular dominance plasticity. Neuron 74, 374–383 (2012). [PubMed]
  • Chhatwal J. P., Myers K. M., Ressler K. J. & Davis M. Regulation of gephyrin and GABAA receptor binding within the amygdala after fear acquisition and extinction. J Neurosci 25, 502–506 (2005). [PubMed]
  • Cui B. et al. One at a time, live tracking of NGF axonal transport using quantum dots. Proc Natl Acad Sci U S A 104, 13666–13671 (2007). [PubMed]
  • Egan M. J., Tan K. & Reck-Peterson S. L. Lis1 is an initiation factor for dynein-driven organelle transport. J Cell Biol 197, 971–982 (2012). [PMC free article] [PubMed]
  • Yamasaki N. et al. Alpha-CaMKII deficiency causes immature dentate gyrus, a novel candidate endophenotype of psychiatric disorders. Mol Brain 1, 6 (2008). [PMC free article] [PubMed]

Articles from Scientific Reports are provided here courtesy of Nature Publishing Group