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A nonneutropenic patient with treated low-grade non-Hodgkin's (Follicular) lymphoma and secondary hypogammaglobulinemia recovered from pneumococcal pneumonia and septicemia (serotype 7F; ST191) subsequent to influenza A H1N1 (2009). Both infections were potentially vaccine preventable. The patient then developed pneumococcal meningitis due to a serotype 35F pneumococcus with a unique Multilocus Sequence Type (ST7004) which was not vaccine preventable. Patient management was influenced by host predisposition to pneumococcal infection, antibiotic intolerance, and poor response to polysaccharide pneumococcal vaccine. Indirect immunofluorescence with anti-human immunoglobulin confirmed a poor or intermediate response to Pneumovax II. Prophylactic erythromycin was initiated, and immunoglobulin transfusions were also commenced as a preventive strategy. ST7004 is a single locus variant of ST1635 which has been associated with the serotype 35F capsule in England. The spi gene in ST7004, which differentiates it from ST1635, is the same as the spi gene present in ST191 which could have arisen from the first disease episode suggesting that horizontal gene transfer may have occurred between different populations of pneumococci present within the patient in an attempt to evade vaccination selection pressure.
We explore the difficulties managing recurrent, life threatening, invasive pneumococcal (IPD) disease in an immunocompromised patient with treated Follicular lymphoma and antibiotic intolerance. Host factors therefore both predisposed to IPD and unresponsiveness to polysaccharide pneumococcal vaccine and hampered the optimal antibiotic treatment of the patient. We describe a novel strategy of prophylaxis against IPD utilizing regular immunoglobulin transfusions and long-term oral antibiotic prophylaxis with erythromycin which since its implementation has prevented further episodes of IPD. Interestingly we also discovered that the most recent of the patient's episodes of IPD was due to a unique sequence-type of Streptococcus pneumoniae with evidence to suggest that it may have been generated in vivo in this patient between episodes of IPD by horizontal gene transfer  both creating a new sequence type and facilitating IPD due to vaccine escape by generation of a nonvaccine-included serotype .
A 76-year-old Caucasian lady with a past medical history of non-Hodgkin's (Follicular) lymphoma, secondary hypogammaglobulinemia, bronchiectasis with recurrent lower respiratory tract infections, and aortic stenosis presented acutely unwell, but not neutropenic, with one week of fever and productive cough. On the day of admission she had been found unresponsive.
On admission she had a Glasgow Coma Scale of 10/15, with eyes opening to speech. She was pyrexial (40.3°C) and tachycardic with a blood pressure of 148/91. An ejection systolic murmur was audible along with bibasal coarse crepitations.
Finger prick testing revealed hypoglycaemia which was treated with 50% dextrose with an increase in the blood glucose but no improvement in the patient's general condition. Electrocardiograph and chest X-ray did not show any acute abnormalities. Echocardiograms were performed on days 2 and 13 with no vegetations or evidence of infective endocarditis.
The patient underwent a computed tomography head scan on day one which was reported as being normal. A lumbar puncture was performed which obtained a visibly turbid cerebrospinal fluid (CSF) with a white cell count of 7600cells per mm3 (95% neutrophils), a red cell count of 250cells per mm3, undetectable glucose level, and a protein level of 7.02g/L. Gram stain of CSF revealed Gram-positive diplococci. Unfortunately there was no growth after 48 hours incubation of CSF, but blood cultures grew S. pneumoniae (serotype 35F, ST7004) susceptible to penicillin (minimum inhibitory concentration = 0.012mg/L), erythromycin (MIC = 0.06mg/L), vancomycin (MIC < 1mg/L), and ceftriaxone (MIC < 0.06mg/L). Polymerase chain reaction of the CSF using a real-time multiplex assay to identify the lytA gene confirmed the presence of pneumococci in CSF, and further PCR for the 7 Multilocus Sequence Typing (MLST) house keeping genes identified this also as an entirely new sequence type (ST7004) currently unique to this patient.
The patient was known to develop a rash when given penicillin and so was initially treated with intravenous ceftriaxone 2g twice daily and vancomycin 750mg twice daily. Dexamethasone 2.5mg four times daily was added orally on day 2 for a 4 day course. On day 6 treatment was rationalised to ceftriaxone 2g twice daily alone on which the patient remained until discharge on day 15 having made a full recovery with no neurological deficit.
Eight months previously this patient had required admission for sepsis while recovering from Influenza A H1N1 (2009) and was found to have left basal pneumococcal pneumonia with septicaemia due to a vaccine preventable serotype (serotype 7F, ST191) treated initially with clarithromycin then levofloxacin. Prior to both episodes of invasive pneumococcal disease (IPD) she had received Pneumovax II (Sanofi Pasteur). We assessed her antibody response to the pneumococcal serotypes present in Pneumovax II using indirect immunofluorescence with anti-human immunoglobulin which indicated a poor response to many serotypes including 7F (Table 1) in keeping with her known secondary hypogammaglobulinemia.
Given the failure to respond to vaccination as a likely consequence of hypogammaglobulinemia and the predisposition this has given to recurrent IPD this patient now receives transfusions of 20g normal human immunoglobulin (Kiovig, Baxter) every 3 weeks to prevent further reinfection. Prophylactic daily erythromycin has been commenced, and this patient is offered yearly seasonal influenza vaccination.
Infection with S. pneumoniae can manifest as pneumonia, meningitis, and septicemia. These can be aggressive and life threatening even in an immunocompetent host. Hypogammaglobulinemia as a consequence of treated Follicular lymphoma is recognized and predisposes to bacterial infection such as recurrent IPD  as does the chronic lung disease of bronchiectasis as well as priming due to recent infection with influenza A . Failure to respond to pneumococcal polysaccharide vaccination in the context of secondary hypogammaglobulinemia is also well known . Penicillin allergy considerably limits the antibiotic treatment options for manifestations of IPD. Consequently not only did this patient have multiple factors predisposing her to IPD, but she also had multiple factors which hampered their treatment and prevention, a potentially fatal combination.
Having successfully treated two episodes of IPD within 9 months, we devised a novel prophylaxis regimen based on regular administration of intravenous immunoglobulin to provide passive immunity  and daily prophylactic erythromycin. The patient continues to be offered seasonal influenza vaccination annually. No further episodes of IPD have occurred since commencing these.
Additionally, the unique predisposing factors in this patient may have generated an environment that facilitated the generation of a unique S. pneumoniae in vivo. In Scotland all CSF and blood isolates of S. pneumoniae undergo serotyping and MLST. Table 2 illustrates that the pneumococcus causing the episode of meningitis is comprised of a new unique sequence type (ST7004) which is closely related to another pneumococcal sequence type identified in the United Kingdom (ST1635) also with a serotype 35F capsule. Figure 1 also shows a relationship between ST7004 and ST1635 which are single locus variants of each other belonging to a clonal complex with ST446 as its founder which according to the MLST database has always been found expressing a serotype 35F capsule. The spi gene that distinguishes them could plausibly have arisen through horizontal gene transfer  from the ST191 pneumococcus that caused the initial episode of septicaemia which may have persisted from several months earlier.
These related sequence types from the same patient suggest that an environment where horizontal gene transfer of the spi gene between the ST191 (presumably persisting from the first episode of IPD) and possibly a serotype 35F-associated ST1635 may have been generated to create an entirely new sequence type, ST7004, with a serotype 35F capsule which would indicate that possibly capsular switching had also occurred . It is unusual to be able to see evidence of such potential horizontal gene transfer and capsular switching to occur in vivo in the same patient. As this patient had been vaccinated against S. pneumoniae, albeit with a suboptimal response, there may have been enough selection pressure produced to drive serotype replacement  in the pneumococcal population colonizing this patient without enough host immunity to prevent infection.
This case illustrates the difficulties of managing recurrent IPD when there are significant host factors such as hypogammaglobulinemia and immunocompromise due to haematological malignancy, penicillin allergy, bronchiectasis, and recurrent lower respiratory tract infections. Such factors predispose both to pneumococcal infection and failure to respond to vaccination. The case also suggests genetic changes in the pneumococcal population which enabled it to persist and cause recurrent infection by means of generating a unique genotype.
The authors have no conflict of interests.
Written informed consent was obtained from the patient for publication of this case report. A copy of written consent is available for review.
This work made use of the MLST website (http://www.mlst.net/) developed by Man-Suen Chan, which was funded by the Wellcome Trust. No funding was received for this work.