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Gamete and embryo development are crucial for successful reproduction and seed set in plants, which is often the determining factor for crop yield. Proline accumulation was largely viewed as a specific reaction to overcome stress conditions, while recent studies suggested important functions of proline metabolism also in reproductive development. Both the level of free proline and proline metabolism were proposed to influence the transition to flowering, as well as pollen and embryo development.
In this study, we performed a detailed analysis of the contribution of individual proline biosynthetic enzymes to vegetative development and reproductive success in Arabidopsis. In contrast to previous reports, we found that pyrroline-5-carboxylate (P5C) synthetase 2 (P5CS2) is not essential for sexual reproduction although p5cs2 mutant plants were retarded in vegetative development and displayed reduced fertility under long-day conditions. Single mutant plants devoid of P5CS1 did not show any developmental defects. Simultaneous absence of both P5CS isoforms resulted in pollen sterility, while fertile egg cells could still be produced. Expression of P5C reductase (P5CR) was indispensable for embryo development but surprisingly not needed for pollen or egg cell fertility. The latter observation could be explained by an extreme stability of P5CR activity, which had a half-life time of greater than 3 weeks in vitro. Expression of P5CR-GFP under the control of the endogenous P5CR promoter was able to restore growth of homozygous p5cr mutant embryos. The analysis of P5CR-GFP-fluorescence in planta supported an exclusively cytoplasmatic localisation of P5CR.
Our results demonstrate that potential alternative pathways for proline synthesis or inter-generation transfer of proline are not sufficient to overcome a defect in proline biosynthesis from glutamate during pollen development. Proline biosynthesis through P5CS2 and P5CR is limiting for vegetative and reproductive development in Arabidopsis, whereas disruption of P5CS1 alone does not affect development of non-stressed plants.
Reproductive success in plants depends to a large extent on successful adaptation to frequently changing environmental conditions. One of the most prominent adaptive responses to various kinds of stress that result in decreased water availability is the accumulation of the amino acid proline (see [1,2] for recent reviews). However, changes in free proline content also occur during the development of plants growing under non-stress conditions, especially in reproductive organs. Pollen grains, a naturally desiccation tolerant tissue, accumulate large amounts of proline and many flowers secrete proline-rich nectar . Primarily, proline is an essential metabolite for protein synthesis and contributes in a unique way to protein folding, structure and stability. The detailed phenotypic analysis of mutants with defects in proline synthesis can therefore promote our understanding of both primary metabolism and specific functions of proline in plant development.
In plants, glutamate is converted to proline in the cytosol and potentially in plastids by the sequential reactions of pyrroline-5-carboxylate (P5C) synthetase (P5CS) and P5C reductase (P5CR) . In animals and fungi, also arginine or ornithine can serve as precursors for proline, while the separation of the contributing enzymes in different subcellular compartments probably impedes this alternative metabolic pathway in plants .
In Arabidopsis, as well as in many other plant species, two P5CS isoforms have been identified with different expression patterns and specific functions in primary metabolism and stress defence [5-7]. P5CS1 (At2g39800) transcription is strongly induced in response to stress, and p5cs1 T-DNA insertion mutants were viable but showed reduced basic levels of free proline and a delayed floral transition [6,8]. Additionally, p5cs1 mutants showed strongly reduced proline accumulation in response to stress, concomitantly with reduced root growth, enhanced production of reactive oxygen species in leaves, and a lower NADP+ to NADPH ratio [9,10]. A P5CS1-GFP fusion protein formed cytosolic speckles in embryonic cells, whereas in leaf mesophyll cells of osmotically stressed plants P5CS1-GFP fluorescence was mostly confined in chloroplasts .
P5CS2 (At3g55610) transcripts and P5CS2-GFP fluorescence were mainly detected in meristematic and developing tissues [5,10]. The P5CS2 promoter was identified as an early target of CONSTANS, a transcriptional activator involved in floral transition . While transcript levels of P5CS2 did not respond strongly to abiotic stress, they were enhanced in plants undergoing a hypersensitive response to avirulent Pseudomonas infection [12,13]. For T-DNA insertion mutants in P5CS2, an embryo lethal phenotype has been reported that could be overcome by ex vivo cultivation of developing seeds with proline feeding. However, homozygous p5cs2 mutant plants died before the onset of flowering, thus the specific role of P5CS2 in reproductive development could so far not be analysed [5,10]. Simultaneous silencing or co-suppression of the two highly similar P5CS genes resulted in retarded growth, delayed flowering and reduced apical dominance [8,14].
The second and final step of proline biosynthesis is catalysed by P5CR, which is encoded by a single gene (At5g14800) in Arabidopsis. The SeedGenes project identified T-DNA insertions in P5CR as the embryo-defective mutation emb2772. Also inhibitor studies on Arabidopsis cell cultures identified P5CR as an essential enzyme for growth . P5CR expression was strongest in young, growing tissues and was induced by stress . Translation efficiency and mRNA stability were identified as additional regulatory steps in P5CR expression . The subcellular localisation of P5CR in plants has so far not been determined unambiguously. While sequence analysis predicts a cytosolic localisation, co-sedimentation of P5CR activity with plastids was observed in pea and soybean [19,20]. Despite the important functions of proline in primary metabolism and in stress tolerance, no experimental data on the localisation of P5CR in vivo were available so far.
In this study, we demonstrate that a P5CR-GFP fusion protein is localised exclusively in the cytosol and can fully complement the developmental defects of p5cr mutants. Additionally, we report a comprehensive analysis of the requirement of P5CR and the two P5CS isoforms for vegetative and reproductive development in Arabidopsis, while previous reports focused mostly on a single step of proline biosynthesis. In contrast to previous reports, suitable cultivation conditions allowed us the generation of fertile homozygous p5cs2 mutants and we observed that p5cs2 but not p5cs1 mutants showed reduced growth and a delay in the onset of flowering. Infertility of p5cs1/p5cs2 double mutant pollen precluded the generation of double homozygous p5cs1/p5cs2 mutant plants even though double mutant female gametes were fertile. The absence of a functional P5CR gene had no influence on the fertility of either male or female gametes, but embryos were aborted after only a few cell divisions in presumably homozygous p5cr mutant seeds. Gamete development in the absence of de-novo P5CR gene expression could rely upon the extraordinary stability of the P5CR protein.
Two previous studies have described p5cs2 T-DNA insertion lines as embryo-lethal or conditionally embryo-lethal and non-fertile. To eliminate potential secondary mutations or ecotype-specific effects, we backcrossed the p5cs2-1 (GABI452_G01) and p5cs2-2 (FLAG_139H07) T-DNA insertion lines three and five times, respectively, to the Col-8 accession. In both lines, the segregation pattern was consistent with a single T-DNA insertion and premature abortion of homozygous seeds (data not shown). Homozygous p5cs2 mutant plants were then generated by in vitro cultivation of immature mutant seeds on MS plates containing 60 mM sucrose and 2 mM proline. We observed that also application of mild salt stress to heterozygous p5cs2-1 mutant plants allowed the formation of approximately 1% homozygous and fertile seeds in vivo. Most of the homozygous plants obtained in either way were phenotypically normal, showing only reduced growth compared to wildtype plants ( Additional file 1: Figure S1A). When kept in short-day and low-light conditions, most homozygous p5cs2 mutant plants completed a normal life cycle and produced viable seeds, which enabled us to analyse development of p5cs2 mutant plants in direct comparison to wildtype and p5cs1-4 mutant plants.
When grown in axenic culture, homozygous p5cs2 seedlings showed a growth-defect that could be complemented by feeding with external proline or application of mild salt stress (Figure (Figure1A).1A). At low mineral or sucrose concentrations, p5cs2 mutant seedlings frequently failed to establish autotrophic growth ( Additional file 1: Figure S1B). In soil, the rosettes of p5cs2-1 mutant plants reached only 57% of the size of wildtype plants (Figure (Figure1B),1B), an effect that was even more pronounced when no mineral fertiliser was applied (data not shown).
With respect to floral transition, p5cs2-1 plants had fewer primary rosette leaves at the onset of bolting, which was delayed by more than 2 days under both short-day and long-day conditions (Figures (Figures2A,2A, B). Occasionally, p5cs2 mutant plants formed elongated or slightly rolled leaves and such plants mostly failed to produce seeds (data not shown). Cultivation in long-day conditions increased the propensity of p5cs2 mutant plants to form abnormal leaves and decreased the proportion of fertile plants. In infertile p5cs2 flowers, the anthers were collapsed and the petals were elongated (Figure (Figure2C).2C). Fertility of mildly affected flowers could be restored by pollination with pollen from a different plant. In p5cs2 mutants with stronger phenotypic abnormalities, also malformations of the pistil and the stigma were observed, extending to disturbances in floral organ identity and architecture of the whole inflorescence. Such flowers could not be fertilised by cross-pollination (data not shown).
To analyse additionally a potential influence of P5CS1 expression on growth and development, also the knockout mutant line p5cs1-4 (Salk_063517) was backcrossed three times to Col-8, and homozygous progeny was included in all experiments. Contrary to the observations of , p5cs1-4 mutant plants did not show any deviations from the wildtype with respect to growth, flowering time, inflorescence architecture or fertility under non-stressful cultivation conditions, irrespective of the light period and the light intensity (Figures (Figures11 and and22).
During backcrossing, heterozygous p5cs2 mutant plants produced less than the expected sulfadiazine (p5cs2-1) or BASTA (p5cs2-2) resistant progeny (Table (Table1).1). Application of mild salt stress increased the mutant allele transmission in both p5cs2 insertion lines, presumably by induction of P5CS1 expression. Reciprocal crossing of heterozygous p5cs2 to wildtype plants indicated that reproductive development is slightly impaired in both the male and the female germlines (Table (Table11).
To get a deeper insight in the role of proline synthesis in reproductive development, we also crossed the p5cs2 mutant lines with the p5cs1-4 mutant. Surprisingly, the frequency of p5cs2-1 mutant alleles was much lower than expected among the progeny of p5cs1-4/p5cs2-1 double heterozygous plants (Table (Table22 and Additional file 2: Figure S2). Transmission of the p5cs2-1 allele after selfing of heterozygous plants dropped from 65.0% in P5CS1 wildtype background to 52.3% and 26.7% in p5cs1-4 heterozygous or homozygous background, respectively. Similar results were obtained with the p5cs2-2 mutant allele.
We never obtained homozygous p5cs2-1 plants that were additionally homozygous or heterozygous for the p5cs1-4 mutation. On the contrary, homozygous p5cs1-4 mutants that were additionally heterozygous for either of the p5cs2 alleles were frequently obtained and showed normal growth and development. Attempts of in vitro rescue of retarded embryos from plants homozygous for the p5cs1-4 allele and heterozygous for the p5cs2-1 allele never produced double homozygous plants.
To determine whether the transmission of p5cs2 mutant alleles was specifically impeded in the male or the female germline, we performed reciprocal crossings between plants with multiple p5cs mutant alleles. Transmission of the p5cs2 alleles through the female germline was between 44% and 50% when the mother plant was additionally homozygous for the p5cs1-4 allele, independently of the P5CS1 genotype of the pollen donor (Table (Table2).2). In sharp contrast, transmission of the p5cs2-1 allele through the male germline was never observed when the pollen donor plant was homozygous for the p5cs1-4 mutation. For the p5cs2-2 allele, we observed just 3 seedlings (among 289 analysed) that appeared to have originated from a p5cs1-4/p5cs2-2 double mutant pollen.
The absolute requirement of a functional P5CS1 or P5CS2 allele for male fertility prompted us to analyse knockout mutants for the second enzymatic step of proline biosynthesis as well. In Arabidopsis, P5CR is encoded by a single copy gene, and the two T-DNA insertion lines used in our experiments (p5cr-1 [Salk_127043] and p5cr2 [Salk_098189]) are listed in the SeedGenes database as embryo-lethal . Although a seed stock from the NASC stock centre (Stock Nr.: N16447) was reportedly derived from a homozygous p5cr-1 plant, only heterozygous or wildtype plants were obtained from these seeds, indicating that the parent plant was not a homozygous p5cr mutant (data not shown). The p5cr-1 mutant line originally contained at least one additional T-DNA insertion that was eliminated by repeated crossing to the Col-8 wildtype. We determined the exact T-DNA insertion sites in both lines and confirmed that the embryo-lethal phenotype co-segregated with the insertion in the P5CR gene (Figure (Figure3A3A and data not shown). Siliques of plants that were heterozygous for either the p5cr-1 or the p5cr-2 allele contained 25% seeds, in which embryo development was arrested at latest after the second division of the embryo proper (Figure (Figure3B-D).3B-D). The progeny of selfed heterozygous p5cr mutant plants segregated 2:1 for kanamycin resistance, as expected forpost-zygotic lethality of homozygous embryos without defects in gametophytic fertility (Figure (Figure3E3E and Table Table3).3). In reciprocal crossings of heterozygous p5cr mutants with the wildtype we observed between 46% and 50% resistant progeny but we could not discriminate whether the deviations from the expected value (50%) were due to either poor expression of the resistance gene or mild defects in gamete development or fertility (Table (Table33).
Attempts to rescue putative homozygous p5cr mutant embryos by proline feeding in vitro failed. Also efforts to promote embryo development of homozygous seeds in siliques of heterozygous parents in situ by external proline feeding or induction of internal proline accumulation through salt stress were ineffective. We concluded that despite normal fertility of p5cr mutant gametes, P5CR expression is essential for embryo development.
To determine the reason why p5cr mutations were transmitted through the male germline, while p5cs1/p5cs2 double mutations were not, pollen grains collected from open flowers of p5cs and p5cr mutant plants were stained with Alexander stain (Figure (Figure4).4). In this procedure, healthy and fertile pollen grains are stained in deep purple, while infertile pollen shows weaker or no staining. We detected slightly less than 2% infertile pollen grains in wildtype and heterozygous p5cs2-1 plants, and this amount approximately doubled in homozygous p5cs2-1 or p5cs1-4 single mutants. Plants heterozygous for mutations in both P5CS isoforms produced 12.2% pollen grains that were smaller in size and almost not stained by Alexander stain. The number of non-stained pollen increased to 19.8% in plants homozygous for the p5cs1-4 mutation and heterozygous for the p5cs2-1 allele. Similar results were obtained with p5cs2-2 mutant plants. On the contrary, pollen from heterozygous p5cr mutant plants did not show any increase in malformed or unstained pollen, which is in agreement with the previously described normal fertility of p5cr mutant pollen (Table (Table33).
Pollen fertility in the absence of P5CR gene expression suggested an alternative way to ensure proline supply or production in p5cr mutant pollen. Analysis of publicly available microarray data indicated that only minor amounts of P5CR mRNA are accumulated in pollen (data not shown). De-novo expression of P5CR protein from an intact gene copy might be dispensable if the P5CR protein present in the pollen mother cell before the separation of the haploid microspores was still active during pollen maturation. To test the likelihood of this hypothesis, the stability of Arabidopsis P5CR was assessed in partially purified preparations from suspension-cultured cells or after heterologous expression in E. coli (Figure (Figure55 and data not shown). As a matter of fact, the enzyme was found highly stable upon storage at 25°C, with an estimated half-life of approximately 25 days. In contrast, the endogenous P5CR protein from E. coli (encoded by proC), isolated and tested under the same experimental conditions, lost more than 50% activity within 24 h. The time from microspore separation to anther opening in Arabidopsis is around 8 days, thus the stability of P5CR in vivo could be sufficient to enable the completion of pollen development after meiotic cytokinesis .
Surprisingly, crossing of p5cr mutants with plants overexpressing a P5CR-GFP fusion protein under control of the Cauliflower Mosaic Virus (CaMV) 35S-promoter did not allow the generation of plants that were homozygous for the P5CR-inactivating insertion (data not shown). This failure may be attributable to the poor activity of the CaMV-35S promoter in embryonic tissue ( Additional file 3: Figure S3). Indeed, transformation of heterozygous p5cr mutants with a construct containing the native P5CR promoter and gene fused to a GFP coding sequence allowed the isolation of plants that were homozygous for the T-DNA insertion inactivating the endogenous P5CR gene ( Additional file 3: Figure S3 and Additional file 4: Figure S4). P5CR-GFP expression under control of the native promoter was strongest in young, rapidly growing tissues like young leaves or root tips and was also detected in embryos. Subcellular distribution of P5CR-GFP fluorescence was the same in overexpressing plants and in plants with the native promoter construct, although in the latter case the GFP signal was hardly discernible from autofluorescence signals in mature tissues. Analysis of GFP-fluorescence in isolated protoplasts and in mesophyll cells revealed a uniform cytoplasmatic distribution of P5CR-GFP under both hypoosmotic and hyperosmotic conditions (Figure (Figure66).
A detailed analysis of Arabidopsis mutants in genes involved in proline biosynthesis allowed us to identify the critical steps in development, for which the corresponding enzymes are required. Consistently with previous reports, P5CS1 was not essential for growth and reproduction [5,10]. Moreover, contrary to the data described by Mattioli and colleagues, p5cs1-4 mutants did not show any delay in the transition to the reproductive phase and no altered morphology of the inflorescence, although the same T-DNA insertion line and similar cultivation conditions were used. Most likely, the original Salk T-DNA insertion line contained additional mutations, which we eliminated by repeated backcrossing.
In this study, we describe for the first time the generation of viable, homozygous p5cs2 mutant seeds in vivo, which enabled us to assess the contribution of P5CS2 to vegetative and reproductive development. In sterile culture, low osmolarity conditions that are suitable to suppress P5CS1 expression frequently blocked the establishment of autotrophic growth in p5cs2 mutant seedlings, whereas supply of proline or mild salt stress conditions enabled normal growth. During later development in soil, the inactivation of P5CS2 by T-DNA insertions caused retarded development but did not prevent successful reproduction when a functional P5CS1 gene was present. For fertility of homozygous p5cs2 mutants in soil, the cultivation conditions were critical, as the plants developed generally well in nutrient-rich soil under short-day conditions, whereas they mostly failed to produce viable seeds in long-day conditions. Previous studies reporting non-viability or infertility of homozygous p5cs2 mutant plants were conducted in areas with a warmer climate and thus support the importance of growth conditions for the viability of p5cs2 mutant plants [5,10]. Light-dependent regulation of P5CS1 and P5CS2 expression was already demonstrated in an earlier study, and both genes were induced by light . Surprisingly, we observed that a longer light period decreased the fertility of p5cs2 mutant plants, indicating that under these conditions P5CS1 is not sufficient to cover the demand for proline during reproductive development.
Within the flowers, a prominent expression of P5CS1-GFP under control of the native promoter was detected in pollen grains, while P5CS2-GFP was expressed in the vegetative parts of the anthers . Collapsed anthers at the time of flower opening were the most frequent lesion in flowers of long-day-cultivated p5cs2 mutant plants, suggesting that P5CS2 expression in sporophytic anther tissue is pivotal for male fertility under certain growth conditions.
Lethality of homozygous p5cs2 mutant embryos in siliques of heterozygous parent plants may be explained by slower growth of the homozygous embryos, resulting in a reduced allocation of nutrients and finally leading to premature desiccation and thus death of homozygous embryos when the heterozygous and wildtype siblings have reached maturity. In siliques of homozygous p5cs2 mutants, all seeds develop at a similar speed and thus desiccation is not induced before the embryos are fully developed. Interestingly, application of salt stress to heterozygous p5cs2 mutants during flowering allowed survival of at least some homozygous embryos, either by induction or activation of P5CS1 or by a delay in the development of heterozygous and wildtype embryos.
Contrary to P5CS, only a single P5CR gene is present in Arabidopsis. The early developmental arrest of homozygous p5cr mutant embryos suggests a limited transfer of proline from the maternal tissue to the developing embryo. This scenario is likely, since the embryo is fully embedded in endosperm tissue that is equally deficient in P5CR expression. Alternatively, continued P5CS activity in P5CR deficient embryos could lead to the accumulation of toxic concentrations of P5C. Toxicity of endogenous P5C accumulation was postulated on the basis of proline-induced toxicity of P5C-dehydrogenase deficient mutants, although a more recent study did not observe toxic effects of externally applied P5C [23-25].
Rescue of homozygous p5cr mutants by expression of a P5CR-GFP fusion protein under control of the native P5CR promoter confirmed that P5CR disruption is the sole reason for the lethality of homozygous p5cr mutant embryos. Observation of P5CR-GFP fluorescence exclusively in the cytosol indicates that cytoplasmatic proline synthesis is sufficient to overcome the developmental defect of p5cr mutant embryos. Import of P5CS1-GFP and P5CS2-GFP but not P5CR-GFP into plastids of osmotically stressed cells raises new questions about the role of plastids in stress-induced proline accumulation and about the intracellular transport of P5C . Also plant species, for which a chloroplastic localisation of P5CR has been suggested deserve a sincere re-examination with respect to P5CR gene copy numbers and P5CR protein localisation [19,20].
Considering the absolute requirement for P5CR expression during embryo development, it is puzzling that p5cr mutant gametes did not show a clear reduction in fertility. The occurrence of 66% heterozygous offspring after selfing of heterozygous p5cr mutant plants might be enabled by a high stability of parental P5CR, either at mRNA or at protein level. While mRNAs of several pollen specific genes were found to be extremely stable in developing pollen, microarray data don’t support the accumulation of P5CR transcripts in Arabidopsis pollen [26,27]. However, the activity of Arabidopsis P5CR protein partially purified from suspension cultured cells showed a half-life of almost one month at 25°C. While Arabidopsis P5CR expressed heterologously in E. coli had a very similar stability, the enzyme from E. coli had a 25-fold lower half-life under the same conditions, despite our efforts to minimise proteolytic degradation by using an E. coli strain deficient in the Lon and OmpT proteases. This remarkable stability strengthens the possibility that enough active P5CR protein remains in mutant gametes to complete pollen development after the separation of mutant and wildtype P5CR alleles in meiotic cytokinesis, allowing normal rates of fertilisation.
In sharp contrast, P5CS expression was essential for pollen fertility, and p5cs1/p5cs2 double mutant ovaries had a reduced success rate to develop fertile seeds even when fertilised by wildtype pollen. Infertility of p5cs1/p5cs2 double mutant pollen impeded the formation of homozygous p5cs1/p5cs2 double mutant embryos ( Additional file 2: Figure S2). These results suggest that parental P5CS mRNA and protein are not stable enough to meet the high demand for proline in pollen and, to a lesser extent, in ovaries. The observation of less than 50% defective pollen grains in flowers of plants with a single functional P5CS allele indicates that some double mutant pollen was completely degenerated and no longer recognisable when pollen from open anthers was analysed. Induction of specific transporters for proline in flowers and especially in pollen has been reported, but proline transport is evidently not able to substitute for P5CS-dependent proline synthesis from glutamate in gametes . Lethality of p5cs1/p5cs2 double mutant pollen further implies that no other pathway to produce P5C, e.g. from ornithine, is sufficiently active in developing pollen to compensate for the lack of P5CS expression.
With the careful physiological and genetic characterization of insertion mutants in the genes P5CS1, P5CS2 and P5CR we demonstrated that both P5CS and P5CR enzyme activities are essential for successful sexual reproduction in Arabidopsis. Obviously neither potential alternative pathways nor cell-to-cell transport of proline can rescue a defect in proline biosynthesis from glutamate. The contrast between sterility in p5cs1/p5cs2 double mutant pollen and normal pollen fertility in the absence of a functional P5CR gene can be explained by an unusual stability of the P5CR protein. The observation of an exclusively cytosolic localization of P5CR-GFP raises interesting new questions regarding the intracellular distribution of proline as well as the role of plastids in proline biosynthesis.
Arabidopsis (Arabidopsis thaliana (L.) Heynh., accession Col-8) and T-DNA insertion lines were obtained from the NASC (GABI452_G01, p5cs2-1; Salk_063517, p5cs1-4; Salk_127043, p5cr-1; Salk_098189, p5cr-2) or from the INRA Versailles Resource Centre (FLAG_139H07, p5cs2-2). Presence of the T-DNA and allelic status were verified by PCR and sequencing of the T-DNA flanking regions. Primer sequences are given in Additional file 5: Table S1. Plants were cultivated axenically as described in . For selection of transgenic plants, the medium was supplemented with 50 μg/ml kanamycin, 5 μg/ml sulfadiazine or 10 μg/ml BASTA (Bayer CropScience, Monheim, Germany). For seed production, plants were kept in a greenhouse with a light period of 9 h (short-day) or 16 h (long-day) with day/night temperatures of 21°C/17°C at photon flux densities between 100 and 200 μmol*m-2*s-1. To mimic the growth conditions described by , plants were kept in an incubator with 16 h of illumination (300 ±30 μmol*m-2*s-1) at day/night temperatures of 24°C/20°C.
A heterotrophic (white) cell culture was maintained in liquid MS medium supplemented with 3% (w/v) sucrose, 2x MS vitamin mix, 0.5 mg/l 2,4-dichlorophenoxyacetic acid, 0.5 mg/l benzylaminopurine and 0.2% (v/v) Plant Preservative Mixture (Plant Cell Technology, Washington, DC, USA) under constant agitation (100 rpm) in dim light.
The open reading frame of P5CR or a genomic fragment containing 1700 bp of 5’ upstream sequence and the entire P5CR gene without the stop codon were amplified by PCR from full-length ORF clone U13409 (ABRC, Columbus, OH, USA) or from genomic Col-8 DNA, respectively. Sequences of PCR primers are given in Additional file 5: Table S1. The resulting PCR fragments were purified and integrated into pENTR by directional TOPO cloning (life technologies, Carlsbad, CA, USA). Subsequently, the inserts were transferred from pENTR to pEarleyGate103 (CD3-685, ABRC), pGWB5 or pGWB4  by LR-recombination (life technologies). Sequencing of the resulting constructs demonstrated in-frame fusion of P5CR to the GFP gene. Transformation of Arabidopsis plants by floral dip was performed according to . Epifluorescence imaging was performed as described in . For confocal microscopy, protoplasts were isolated from P5CR-GFP expressing transgenic plants and Col-8 according to the method described by . Protoplasts or water-infiltrated leaves were viewed with a 40x oil immersion lens on a Zeiss LSM 510 Meta confocal microscope (Zeiss, Oberkochen, Germany). GFP and chlorophyll fluorescence signals were sequentially captured with the Meta detector of the confocal microscope (GFP: 497–550 nm, chlorophyll: 657–690 nm). Overlay of the images and adjustment to identical brightness and contrast settings was performed in ImageJ and Adobe Photoshop. Whole flowers were photographed with a VHX 500F digital microscope (Keyence, Osaka, Japan).
For analysis of developmental defects of embryos, immature seeds were isolated under a stereo microscope and cleared in an 8:3:1 (w:v:v) mixture of chloral hydrate:water:glycerol. Images were captured using differential interference contrast (Nomarski) optics and a black-and-white digital camera. Pollen was isolated by vigorously shaking open flowers in ice-cold 300 mM mannitol and centrifugation for 1 min at 12000 g. Viability staining was performed according to  for 16 h at 50°C. Images of stained pollen were captured at 100 or 400-fold magnification with a digital colour camera.
Plant and bacterial cells were homogenized in an ice-cold mortar with 1 g*(g cells)-1 quartz sand or 2 g*(g cells)-1 alumina, respectively. The homogenate was resuspended in ice-cold extraction buffer (10 mM Tris–HCl pH 7.4, 0.5 mM dithiothreitol, 0.5 mM EDTA), and centrifuged at 4°C for 10 min at 10000 g. Proteins were precipitated from the supernatant by adding solid ammonium sulphate to 70% saturation and then pelleted by centrifugation. The protein pellet was dissolved in a minimal amount of extraction buffer and desalted by passage through a Bio-Gel P6DG column (Bio-Rad, Hercules, CA, USA). The sample was loaded onto a DEAE-Sephacel (GE Healthcare, Little Chalfont, UK) column equilibrated with extraction buffer. Following extensive washing, proteins were eluted with increasing NaCl concentrations in extraction buffer.
The physiological, forward reaction of P5CR was measured by following the P5C-dependent oxidation of NADH. The assay mixture contained 100 mM Tris–HCl buffer pH 7.4, 0.1 mM MgCl2, 2 mM DL-P5C, and 0.25 mM NADH in a final volume of 1 ml. A limiting amount of enzyme (0.05-0.25 nkat) was added to the prewarmed mixture, and the decrease in absorbance at 340 nm was determined at 35°C for up to 10 min against blanks from which P5C had been omitted. The activity was determined from the initial linear rate, with the assumption of an extinction coefficient for NADH of 6,220 M-1*cm-1. DL-P5C was synthesized by the periodate oxidation of δ-allo-hydroxylysine (Sigma-Aldrich, St. Louis, MO, USA), and purified by cation-exchange chromatography on a Dowex AG50 (200–400 mesh) column.
The authors declare that they have no competing interests.
DF designed the study and performed or supervised the majority of the experiments. GW produced the confocal images, LB performed the analyses of growth and flowering time, GF isolated and assayed the P5CR enzymes. All authors have contributed to the manuscript and approved its final version.
Figure S1. Developmental defects of homozygous p5cs2 mutants. A: Five-week-old plants cultivated in short-day conditions. B: Two-week-old seedlings cultivated axenically on half strength MS medium with 30 mM sucrose.
Figure S2. Heredity diagram for p5cs1/p5cs2 double heterozygous mutants. A indicates wildtype P5CS2 allele; a indicates p5cs2 mutant allele; B indicates wildtype P5CS1 allele; b indicates p5cs1 mutant allele; green shading indicates herbicide resistance mediated by the T-DNA insertion in p5cs2 mutant alleles; pink shading indicates non-viable gamete or embryo; hatched pink shading indicates that the respective progeny will not be observed because of non-viable pollen. Note that the thick black lines delimit the heredity diagram for a heterozygous p5cs2 single mutant, while the red lines delimit the progeny of a heterozygous p5cs2 mutant that is additionally homozygous for a p5cs1 mutation.
Figure S3. Expression of P5CR-GFP in embryos. Epifluorescense and brightfield images of isolated embryos displayed in false colour. A-D: Embryo of a homozygous p5cr-2 mutant plant complemented with pGWB4-P5CR, containing the native P5Cpromoter and gene fused with GFP. E-H: Embryo of a Col-8 wildtype plant transformed with pGWB5-P5CR, expressing the P5CR-cDNA fused to GFP under control of the CaMV-35S promoter. I-L: Embryo of a Col-8 wildtype plant. Scale bar = 20 μm.
Figure S4. Subcellular localisation of P5CR-GFP and complementation of the p5cr-1 mutant. A-D: Epifluorescence images of homozygous p5cr-1 mutants expressing a P5CR-GFP fusion protein under control of the native P5CR promoter. A-C: Epidermal and spongy parenchyma cells; scale bar = 20 μm. A: GFP fluorescence. B: Overlay of GFP and chlorophyll fluorescence. C: Brightfield image of the same area. D: Comparison of a P5CR-GFP expressing root tip (left) and a non-transgenic root tip, overlay of a brightfield image with GFP fluorescence, scale bar = 50 μm. E: Schematic drawing of the DNA construct in pGWB4 that was used to complement the p5cr mutants in comparison to the wildtype P5CR gene. Arrows indicate the binding sites of the primers that were used to determine the genotype of the complemented mutants (see panel I). F-H: Epifluorescence images of epidermal and spongy parenchyma cells of a wildtype plant transformed with pEG103-P5CR. Note that overexpression with this construct resulted in the formation of cytosolic protein aggregates; scale bar = 20 μm. F: GFP fluorescence. G: Overlay of GFP and chlorophyll fluorescence. H: Brightfield image of the same area. I: PCR-genotyping of p5cr-1 mutants complemented by transformation with pGWB4-P5CR. See panel E for the primer binding sites in the genomic and the transgenic copy of P5CR. J: Schematic drawing of the constructs in pEG103 and pGWB5 for overexpression of P5CR-GFP.
Table S1. PCR-primers used in this study.
The authors would like to thank Silvia Kuhn, Roswitha Miller and Mattia Duò for assistance in the lab and the gardeners of the University of Konstanz for excellent plant care. Veit Dörken and the Bioimaging Centre of the University of Konstanz are acknowledged for help with digital imaging. We thank Iwona Adamska, Manuela Perthold and Doris Rentsch for critically reading the manuscript. Iwona Adamska and the University of Konstanz provided material and financial support for this study.