The traditional feedstocks for biodiesel production are vegetable oils and animal fats resulting in competition with the food industry. Single cell oil (SCO) from microbes is considered as an alternative oil source due to the high productivity and low land requirement [
1]. Among different oleaginous microorganisms, increasing attention has been paid to filamentous fungi due to multiple advantages: (1) Accumulate up to 80% of lipid and produce some value-added fatty acids [
2]. Aggelis [
3] cultured
Cunninghamella echinulata to achieve 46.6% of cellular lipid with a γ-linolenic acid (GLA) content of 14.1%. Moreover, it was demonstrated that the arachidonic acid (AA) content in
Mortierella alpine was more than 16% of dry cell weight and the total lipid also reached 36% [
4]. (2) Show good lipid profiles for making high quality biodiesel. Vicente et al. [
5] suggested that not all lipids extracted from microbes were suitable for biodiesel production but only saponifiable lipids and free fatty acids could be produced to fatty acid methyl esters (FAMEs). Their results showed that 98.0% of the total lipids extracted from
Mucor circinelloides were saponifiable lipids and free fatty acids, and the fungus-derived biodiesel met the specifications of the current existing standards very well; (3) Use a variety of carbon sources for lipid production, such as monosugar, glycerol, acetic acid, cereal, corncob, sweet sorghum, wheat straw, orange peel, apple pomace and oil [
3,
6-
13]; (4) Produce oils through solid state fermentation with low capital cost and low energy expenditure [
8]; (5) Tend to form pellets that not only reduce the viscosity of the fermentation broth to improve the mixing and mass transfer performance, but also are much easier to be harvested from cell broth by using simple filtration, compared with traditional high cost centrifugation methods [
14].
Although SCO from filamentous fungi shows the promise for biodiesel production, the hurdle is the high production cost. It has been reported that up to 75% of the total costs came from the feedstocks or carbon sources required for producing microbial lipids [
2]. However, the cost will be reduced potentially if cheap feedstocks or waste materials can be used. Xue et al. [
15] successfully grew the oleaginous yeast
Rhodotorula glutinis with monosodium glutamate wastewater to produce 25

g

L
-1 biomass with 25% lipid content. André et al. [
6] reported that the fungus
Aspergillus niger could accumulate 41–57% of lipid on biodiesel derived waste glycerol. Moreover, food wastes have proven to be suitable substrates for production of lipid by yeast and microalgae [
16,
17]. However, the availability of these sources is limited and not able to meet the increasing demand of alternative energy. It is very urgent, therefore, to investigate other renewable sources as feedstocks for microbial lipid production.
Lignocellulosic materials have attracted a lot of attention as feedstocks for biofuel production due to its abundance and relatively low cost. It was estimated that there would be potentially over 1.3 billion dry tons of lignocellulosic biomass produced in the US each year on a sustainable basis for biofuel production [
18]. The energy content of this amount of biomass is equivalent to 3.8 billion barrels of oil, which is approximately more than half of the US’s annual energy consumption [
19]. These inexpensive materials such as agricultural residues can result in a reasonable biofuel production cost [
20]. Some studies have been conducted to produce lipid from oleaginous yeast by feeding with lignocellulosic material. Huang et al. [
21] obtained a cell density of 28.6

g

L
-1 with 40% lipid content by culturing the yeast
Trichosporon fermentans with detoxified rice straw hydrolysate. Yu et al. [
22] reported that the yeast
Cryptococcus curvatus could grow with non-detoxified wheat straw hydrolysate and reach 17.2

g

L
-1 dry cell weight with 33.5% lipid content. However, cultivation of filamentous fungi for lipid production with lignocellulosic hydrolysate has not been well examined.
The purpose of this study is to investigate the feasibility of culturing the filamentous fungi with lignocellulosic materials and to screen the best lipid producing strain, especially using the non-detoxified hydrolysates. The very basic requirements for fungi to be used for this purpose are: (1) can use various sugars, especially xylose; (2) can adapt to the lignocellulosic biomass processing without extensively conditioning the sugar stream; (3) can accumulate high lipid contents while utilizing lignocellulosics as the carbon source; (4) can grow with proper morphology to facilitate downstream processing.To achieve these objectives, the lipid accumulation capability of eleven filamentous fungal strains was evaluated on glucose and xylose respectively. Then, the selected strains with high lipid contents were cultivated with hydrolysates from dilute sulfuric acid pretreated wheat straw. The biomass and lipid yields, fatty acid profiles, capability to tolerate inhibitors and pellet formation were studied. Finally, the fungal lipid based biodiesel yield and cost were estimated when lignocellulosic biomass was used as the feedstock.