PMCCPMCCPMCC

Search tips
Search criteria 

Advanced

Logo of bmcbioiBioMed Centralsearchsubmit a manuscriptregisterthis articleBMC Bioinformatics
 
From:
Published online Aug 1, 2012. doi: 10.1186/1471-2105-13-187
Table 4
Annotation comparison methods
 A. thalianaD. melanogasterG. maxH. sapiens
Reference annotations
TAIR9
FlyBase 5.39
NCBI Entrez
UCSC knownGene (hg19)
Prediction annotations
TAIR10
Ensembl r65
JGI / Phytozome
Ensembl r65
Average runtime (sec)
Text
HTML
Text
HTML
Text
HTML
Text
HTML
n=1
36.3
859.4
91.1
1,350.5
85.3
1,461.1
294.3
6,422.0
n=2
32.8
449.2
56.6
859.5
79.4
768.4
181.3
4,089.5
n=4
30.7
246.5
39.2
633.7
76.5
439.9
130.1
2,751.2
n=8
29.8
168.7
32.4
546.6
76.3
330.5
108.0
2,323.3
Gene loci
25,618
10,976
47,877
17,865
shared
25,590
10,944
37,942
7,779
unique to reference
6
32
3,363
9,569
unique to prediction
22
0
6,572
517
Comparisons
33,002
22,474
38,734
16,168
perfect matches
31,750
96.2%
22,446
99.9%
2,489
6.4%
2,517
15.6%
CDS structure matches
420
1.3%
0
0.0%
17,450
45.1%
8,269
51.1%
exon structure matches
8
0.0%
21
0.1%
26
0.1%
27
0.2%
UTR structure matches
159
0.5%
1
0.0%
647
1.7%
58
0.4%
non-matches6652.0%60.0%18,12246.8%5,29732.8%
Articles from BMC Bioinformatics are provided here courtesy of
BioMed Central