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Acta Crystallogr Sect E Struct Rep Online. Sep 1, 2012; 68(Pt 9): o2815.
Published online Aug 31, 2012. doi:  10.1107/S1600536812036756
PMCID: PMC3435839
(E)-4-(2-Hy­droxy-3-meth­oxy­benzyl­idene­amino)-6-methyl-3-sulfanyl­idene-3,4-dihydro-1,2,4-triazin-5(2H)-one
Bahareh Shirinkam,a Masoumeh Tabatabaee,a* Mitra Gassemzadeh,b and Bernhard Neumullerc
aDepartment of Chemistry, Yazd Branch, Islamic Azad University, Yazd, Iran
bChemistry and Chemical Engineering Research Center of Iran, Tehran, Iran
cDepartment of Chemistry, Marburg University, Marburg, Germany
Correspondence e-mail: tabatabaee45/at/gmail.com
Received August 7, 2012; Accepted August 24, 2012.
Abstract
In the title mol­ecule, C12H12N4O3S, there is an intra­molecular O—H(...)N hydrogen bond. The dihedral angle between the benzene and triazine rings is 65.9 (3)°. In the crystal, N—H(...)S and O—H(...)N hydrogen bonds link the mol­ecules into chains along [010]. In addition, there are weak π–π stacking inter­actions between symmetry-related triazine rings with a centroid–centroid distance of 3.560 (3)°.
Related literature  
For the biological activity of azomethine compounds, see: Todeschini et al. (1998 [triangle]); Demirbas (2004 [triangle]); Rando et al. (2002 [triangle]). For general applications of Schiff base compounds, see: Galic et al. (2001 [triangle]); Wyrzykiewicz & Prukah (1998 [triangle]); Dubey et al. (1991 [triangle]). For the crystal structures of related Schiff base compounds, see: Tabatabaee et al. (2006 [triangle], 2007 [triangle], 2008 [triangle], 2009 [triangle]). For the synthesis of the starting material, see: Dornow et al. (1964 [triangle]).
An external file that holds a picture, illustration, etc.
Object name is e-68-o2815-scheme1.jpg Object name is e-68-o2815-scheme1.jpg
Crystal data  
  • C12H12N4O3S
  • M r = 292.32
  • Monoclinic, An external file that holds a picture, illustration, etc.
Object name is e-68-o2815-efi1.jpg
  • a = 13.679 (3) Å
  • b = 6.799 (1) Å
  • c = 13.797 (3) Å
  • β = 97.37 (2)°
  • V = 1272.6 (4) Å3
  • Z = 4
  • Mo Kα radiation
  • μ = 0.27 mm−1
  • T = 100 K
  • 0.17 × 0.16 × 0.05 mm
Data collection  
  • Stoe IPDS II diffractometer
  • Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2008 [triangle]) T min = 0.19, T max = 1.0
  • 6252 measured reflections
  • 2466 independent reflections
  • 781 reflections with I > 2σ(I)
  • R int = 0.168
Refinement  
  • R[F 2 > 2σ(F 2)] = 0.063
  • wR(F 2) = 0.148
  • S = 0.69
  • 2466 reflections
  • 184 parameters
  • H-atom parameters constrained
  • Δρmax = 0.25 e Å−3
  • Δρmin = −0.25 e Å−3
Data collection: X-AREA (Stoe & Cie, 2008 [triangle]); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2008 [triangle]); program(s) used to solve structure: SIR92 (Altomare et al., 1994 [triangle]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 [triangle]); molecular graphics: SHELXTL (Sheldrick, 2008 [triangle]) and PLATON (Spek, 2009 [triangle]); software used to prepare material for publication: WinGX (Farrugia, 1999 [triangle]).
Table 1
Table 1
Hydrogen-bond geometry (Å, °)
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036756/lh5515sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036756/lh5515Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812036756/lh5515Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Acknowledgments
This research was supported by the Islamic Azad University, Yazd Branch.
supplementary crystallographic information
Comment
Azomethine compounds have been extensively studied for various reasons, one of which is their biological activity (Todeschini et al., 1998; Demirbas, 2004; Rando et al., 2002). Schiff bases, containing different donor atoms, also find use in analytical applications and metal coordination (Galic et al., 2001; Wyrzykiewicz & Prukah, 1998; Dubey et al., 1991). In a sequence of studies, we have investigated the synthesis and crystal structure of several Schiff bases derived 4-amino-5-methyl-2H-1,2,4-triazole-3(4H)-thione (AMTT) and 4-amino-6-methyl-3-thio-3,4-dihydro-1,2,4-triazin-5(2H)-one (AMTTO) compounds (Tabatabaee et al. 2006;2007;2008;2009) with various aldehydes. Herein, we report the crystal structure of the title compound.
The molecular structure of the title compound is shown in Fig. 1. The bond distances and angles agree with related compounds (Tabatabaee et al., 2006; 2007; 2008; 2009). In the crystal, N—H···S and O—H···N hydrogen bonds link molecules into chains along [010] (Fig. 2). In addition, there are weak π–π stacking interactions between triazine rings Cg···Cg(1-x,-y,2-z) = 3.560 (3)Å, where Cg is the centroid defined by N1/C1/N4/N3/C3/C2.
Experimental
4-Amino-6-methyl-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one (AMTTO) was prepared according to the literature procedure (Dornow et al., 1964). A solution of (AMTTO) (0.632 g, 4 mmol) in ethanol (10 ml) was treated with 2-hydroxy-3-methoxybenzaldehyde (0.608 g, 4 mmol) and the resulting mixture was acidified with 3 drops of hydrochloric acid (37.5%). The reaction mixture was refluxed. The progress of the reaction was monitored by TLC. After completion of the reaction (8 hrs), the pale yellow precipitate was filtered off and the clear solution was kept at 277K to give yellow plates crystals of the title compound (yield 79%).
Refinement
H atoms were placed in calculated positions with C—H = 0.95 - 0.98 Å, O—H = 0.89Å and N—H = 0.88Å. They were included in the refinement in a riding-motion approximation with a refined common displacement parameter of Uiso(H) = 0.062 (6)Å2. The diffraction from the crystal was very weak and this may affect the precision of the structure.
Figures
Fig. 1.
Fig. 1.
The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level.
Fig. 2.
Fig. 2.
Part of the crystal structure with hydrogen bonds drawn as dashed lines.
Fig. 3.
Fig. 3.
A view of a π–π stacking interaction.
Crystal data
C12H12N4O3SF(000) = 608
Mr = 292.32Dx = 1.526 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2500 reflections
a = 13.679 (3) Åθ = 1.5–25.9°
b = 6.799 (1) ŵ = 0.27 mm1
c = 13.797 (3) ÅT = 100 K
β = 97.37 (2)°Plate, yellow
V = 1272.6 (4) Å30.17 × 0.16 × 0.05 mm
Z = 4
Data collection
Stoe IPDS II diffractometer2466 independent reflections
Radiation source: fine-focus sealed tube781 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.168
ω scansθmax = 25.9°, θmin = 1.5°
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2008)h = −16→16
Tmin = 0.19, Tmax = 1.0k = −8→7
6252 measured reflectionsl = −16→16
Refinement
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H-atom parameters constrained
S = 0.69w = 1/[σ2(Fo2) + (0.0454P)2] where P = (Fo2 + 2Fc2)/3
2466 reflections(Δ/σ)max = 0.002
184 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.25 e Å3
Special details
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
xyzUiso*/Ueq
S10.63854 (13)0.3469 (2)0.97729 (12)0.0493 (5)
O10.4940 (3)−0.2444 (6)0.8000 (3)0.0543 (12)
O20.8173 (3)−0.1839 (6)1.0066 (3)0.0502 (11)
H20.7563−0.13600.99590.062 (6)*
O31.0050 (3)−0.2641 (5)1.0104 (3)0.0533 (11)
N10.5557 (4)0.0250 (6)0.8869 (3)0.0424 (12)
N20.6523 (4)−0.0561 (6)0.9024 (4)0.0448 (13)
N30.3669 (4)0.1720 (7)0.8798 (3)0.0466 (13)
N40.4513 (4)0.2673 (6)0.9210 (3)0.0425 (13)
H10.44220.38320.94670.062 (6)*
C10.5420 (5)0.2093 (8)0.9268 (4)0.0450 (16)
C20.4779 (5)−0.0841 (8)0.8374 (4)0.0417 (15)
C30.3819 (4)0.0048 (8)0.8378 (4)0.0451 (16)
C40.2920 (5)−0.1023 (8)0.7908 (4)0.0570 (19)
H410.2328−0.03000.80280.062 (6)*
H420.2905−0.23460.81880.062 (6)*
H430.2943−0.11210.72030.062 (6)*
C50.6952 (5)−0.0721 (8)0.8260 (5)0.0473 (17)
H510.6594−0.03940.76450.062 (6)*
C60.7947 (5)−0.1371 (9)0.8290 (5)0.0478 (16)
C70.8550 (5)−0.1852 (9)0.9182 (5)0.0504 (17)
C80.9545 (5)−0.2297 (8)0.9195 (5)0.0491 (17)
C90.9954 (5)−0.2408 (8)0.8333 (5)0.0551 (17)
H911.0629−0.27450.83400.062 (6)*
C100.9358 (5)−0.2017 (8)0.7439 (5)0.0462 (16)
H1010.9634−0.21260.68440.062 (6)*
C110.8401 (5)−0.1490 (9)0.7416 (4)0.0485 (16)
H1110.8024−0.11940.68070.062 (6)*
C121.1069 (4)−0.3021 (9)1.0169 (5)0.0521 (17)
H1211.1341−0.31961.08560.062 (6)*
H1221.1398−0.19110.98930.062 (6)*
H1231.1178−0.42200.98030.062 (6)*
Atomic displacement parameters (Å2)
U11U22U33U12U13U23
S10.0519 (10)0.0425 (8)0.0543 (10)−0.0001 (8)0.0096 (8)−0.0035 (8)
O10.066 (3)0.044 (2)0.052 (3)0.000 (2)0.008 (2)−0.003 (2)
O20.042 (3)0.055 (3)0.055 (3)0.011 (2)0.011 (2)0.005 (2)
O30.047 (3)0.055 (2)0.057 (3)0.007 (2)0.003 (2)0.000 (2)
N10.045 (3)0.037 (3)0.045 (3)0.002 (2)0.007 (3)0.002 (2)
N20.042 (3)0.040 (3)0.054 (3)0.007 (2)0.014 (3)0.003 (3)
N30.056 (3)0.039 (3)0.045 (3)0.002 (3)0.008 (3)0.000 (2)
N40.040 (3)0.036 (3)0.052 (3)−0.004 (3)0.008 (3)−0.004 (2)
C10.042 (4)0.039 (3)0.054 (4)−0.001 (3)0.008 (3)0.009 (3)
C20.053 (4)0.035 (3)0.040 (4)0.002 (3)0.019 (3)−0.001 (3)
C30.050 (4)0.040 (3)0.046 (4)0.002 (3)0.010 (3)0.004 (3)
C40.084 (5)0.035 (4)0.051 (4)0.006 (3)0.004 (4)−0.006 (3)
C50.047 (4)0.034 (3)0.061 (5)0.002 (3)0.003 (4)0.002 (3)
C60.045 (4)0.038 (3)0.061 (4)−0.007 (3)0.007 (4)0.004 (3)
C70.057 (5)0.043 (4)0.053 (4)−0.004 (3)0.013 (4)−0.002 (3)
C80.044 (4)0.036 (3)0.067 (5)0.002 (3)0.006 (4)0.000 (3)
C90.059 (5)0.045 (3)0.064 (5)−0.004 (3)0.018 (4)0.002 (3)
C100.047 (4)0.043 (4)0.054 (4)−0.007 (3)0.025 (4)0.004 (3)
C110.051 (4)0.047 (3)0.047 (4)−0.004 (3)0.009 (3)−0.005 (3)
C120.033 (4)0.055 (4)0.070 (4)0.004 (3)0.015 (3)0.008 (3)
Geometric parameters (Å, º)
S1—C11.694 (6)C4—H420.9800
O1—C21.238 (6)C4—H430.9800
O2—C71.383 (7)C5—C61.427 (8)
O2—H20.8900C5—H510.9500
O3—C81.372 (7)C6—C111.427 (8)
O3—C121.409 (7)C6—C71.428 (8)
N1—C11.391 (7)C7—C81.393 (8)
N1—C21.401 (7)C8—C91.380 (9)
N1—N21.422 (6)C9—C101.413 (8)
N2—C51.275 (7)C9—H910.9500
N3—C31.303 (7)C10—C111.354 (8)
N3—N41.381 (6)C10—H1010.9500
N4—C11.295 (7)C11—H1110.9500
N4—H10.8800C12—H1210.9800
C2—C31.447 (8)C12—H1220.9800
C3—C41.503 (8)C12—H1230.9800
C4—H410.9800
C7—O2—H2107.6N2—C5—H51118.6
C8—O3—C12117.9 (5)C6—C5—H51118.6
C1—N1—C2122.5 (5)C11—C6—C7116.7 (6)
C1—N1—N2117.3 (5)C11—C6—C5120.6 (6)
C2—N1—N2120.1 (4)C7—C6—C5122.6 (6)
C5—N2—N1115.2 (5)O2—C7—C8117.6 (6)
C3—N3—N4114.9 (5)O2—C7—C6121.3 (6)
C1—N4—N3128.8 (5)C8—C7—C6121.1 (6)
C1—N4—H1115.6O3—C8—C9124.5 (6)
N3—N4—H1115.6O3—C8—C7115.2 (6)
N4—C1—N1115.2 (5)C9—C8—C7120.3 (6)
N4—C1—S1123.2 (5)C8—C9—C10119.4 (6)
N1—C1—S1121.6 (5)C8—C9—H91120.3
O1—C2—N1120.3 (5)C10—C9—H91120.3
O1—C2—C3125.5 (6)C11—C10—C9121.2 (6)
N1—C2—C3114.2 (5)C11—C10—H101119.4
N3—C3—C2124.1 (5)C9—C10—H101119.4
N3—C3—C4116.6 (5)C10—C11—C6121.3 (6)
C2—C3—C4119.2 (5)C10—C11—H111119.4
C3—C4—H41109.5C6—C11—H111119.4
C3—C4—H42109.5O3—C12—H121109.5
H41—C4—H42109.5O3—C12—H122109.5
C3—C4—H43109.5H121—C12—H122109.5
H41—C4—H43109.5O3—C12—H123109.5
H42—C4—H43109.5H121—C12—H123109.5
N2—C5—C6122.8 (6)H122—C12—H123109.5
Hydrogen-bond geometry (Å, º)
D—H···AD—HH···AD···AD—H···A
N4—H1···S1i0.882.453.287 (5)160
O2—H2···N20.891.872.662 (7)146
O2—H2···N3ii0.892.573.135 (7)122
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5515).
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