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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
Nat Med. Author manuscript; available in PMC 2012 August 24.
Published in final edited form as:
PMCID: PMC3426920

Gut microbes: friends or fiends?

There is now a general consensus that the two major inflammatory bowel diseases (IBDs), Crohn’s disease and ulcerative colitis, arise from an abnormal immune response to one or more bacterial components of the very rich community of commensal flora in the large bowel and the more distal parts of the small bowel1. Theoretically, this abnormal response can have two origins: an increased proinflammatory response to a bacterial component or a decreased regulatory response, which may lead to an excessive effector immune response. In this context, IBD research has recently focused on identifying organisms or components in the gut microflora that facilitate or thwart one of these disease mechanisms.

Previous studies2,3 were crucial for showing how a particular gut commensal organism, Bacteroides fragilis, which expresses a capsular polysaccharide known as polysaccharide A (PSA), induces an increased immunoregulatory—and protective—response in the colons of normal mice, which is able to lessen colonic inflammation. These studies therefore pointed to a possible way of using this organism, or, more likely, a product of this organism, to treat IBD.

A recent study by Round et al.4 represents the leading edge of this line of research. The authors showed that monocolonization of germ-free mice with B. fragilis induces accumulation of Foxp3+ regulatory cells (Treg cells) in the lamina propria in the gut, which produce increased amounts of anti-inflammatory cytokines such as interleukin-10 (IL-10) and transforming growth factor-β2 (TGF-β2)4. This effect was entirely dependent on the expression of PSA, as B. fragilis lacking PSA did not have the same inducing effect, and oral administration of PSA in mice resulted in an increased number of Treg cells.

Round et al.4 also showed that Treg cells from PSA-treated mice compared to those from saline-treated mice show a PSA-specific profile with an enhanced capacity to suppress effector T cells in vitro and to express increased levels of Il-10, TGF-β2, granzyme B and CCR6 mRNA. Finally, the authors investigated the possible clinical applicability of these findings, assessing the capacity of PSA to prevent or ‘cure’ 2,4,6-trinitrobenzene sulfonic acid (TNBS)-induced colitis in wild-type BALB/c mice—an acute and intense T helper type 1 (TH1) T cell (interferon-γ (IFN-γ))-mediated colitis—by oral PSA administration either before the onset of colitis or after inflammation had been established4. Oral PSA administration indeed ameliorated—but did not completely reverse—colitis under both conditions, probably by increasing the number of Treg cells and their anti-inflammatory cytokines, IL-10 and TGF-β (Fig. 1).

Figure 1
Regulation of colitis by PSA through the induction of Treg cells. PSA produced by the commensal organism B. fragilis in the gut lumen is taken up by intestinal dendritic cells. These immune cells then present PSA to naive CD4+ T cells, which recognize ...

This study of B. fragilis4 is part of a large group of studies that are attempting to define pro- or anti-inflammatory organisms in IBD. Studies focusing on single organisms have shown that Faecalibacterium prausnitzii has a protective function, as a reduced number of these bacteria in the intestine was associated with increased post-operative recurrence of Crohn’s disease5. In addition, oral administration of F. prausnitzii or a supernatant derived from this organism decreased the severity of TNBS-induced colitis and associated production of proinflammatory cytokines5. This organism, similarly to B. fragilis, can inhibit gut inflammation, although in this case the inhibitory mechanism is far less clear.

Other studies of single organisms, however, have shown that a subset of people with Crohn’s disease harbor a potentially proinflammatory ‘adherent-invasive’ strain of Escherichia coli in their small intestine6. Although this has been verified by other studies, it remains unclear whether these organisms cause disease or colonize the gut after disease is established7.

Studies of organisms in IBD focusing on the bacterial community as a whole comprise the major effort now underway to define the gut microbiome in humans in general and in IBD in particular. Analyses of bacterial 16S rRNA by microarray probes or studies using sequencing of 16S rRNA in clonal libraries derived from bacteria, among other techniques811, showed how individuals with IBD present with depletion of some commensal microbes in the phylogenic divisions Firmicutes and Bacteroidetes, including F. prausnitzii and B. fragilis, respectively5,8,11. This finding is congruent with the idea that Crohn’s disease is due to or aggravated by the loss of bacteria that promote regulatory responses, such as B. fragilis; however, the analyses conducted so far have shown that such losses usually involve large groups of organisms rather than specific bacterial strains.

A surprising aspect of the B. fragilis studies was that a specific antigen such as PSA has a remarkable ability to induce Foxp3+ Treg cells. Induction of Treg cells was absent in Toll-like receptor 2 (TLR2)-deficient mice, implying that induction is due to an innate immune response mediated by TLR2. This finding suggests that PSA has a dual function—it stimulates T cells via conventional presentation to the T cell receptor, which then upregulates T cell expression of TLR2 and allows direct PSA stimulation of naive T cells that results in Treg cell differentiation.

Regardless of the mechanism, it is apparent that this polysaccharide could be the basis of a viable IBD therapy. Yet at least two questions must be answered to prove the feasibility of this approach. First, it was shown that PSA not only induces regulatory T cells that protect from IBD but also induces CD4+ T cells to undergo differentiation into IFN-γ–producing cells–TH1 differentiation–which are potentially proinflammatory T cells12. As yet, the conditions that elicit a particular arm of this dichotomous response have not been defined, and it is therefore possible that, in some circumstances, PSA administration will induce a proinflammatory TH1 response, which can exacerbate a preexisting inflammatory disease.

The second question relates to the general idea that induction of Treg cells can treat inflammatory disease. There is now considerable evidence that proinflammatory factors, such as IL-23, which is secreted by APCs in support of TH17 responses, have specific downregulatory effects on Treg cell development13. In addition, Treg cells are considered ‘plastic’, as they can convert into proinflammatory IL-17–secreting cells when they are exposed to IL-6, a cytokine secreted by inflammatory macrophages14.

These facts pose the possibility that robust inflammation, such as that present in IBD, can ‘trump’ an anti-inflammatory Treg cell response induced by PSA, unless the protective Treg cells completely quell an incipient inflammation and prevent countervailing secretion of inhibitory cytokines such as IL-6, a condition not met in the TNBS-induced colitis study discussed above.

It might therefore be prudent to initially test the efficacy of PSA in people who are close to complete remission from disease as a result of previous treatment by surgery or administration of antibodies against inflammatory cytokines, such as antibody to TNF-α or antibody to IL-12 p40, to determine whether treatment with PSA prevents recurrent disease. This approach would obviate problems derived from the presence of cytokines that facilitate PSA induction of TH1 cells or the presence of cytokines that inhibit Treg cell expansion or activity.



The author declares no competing financial interests.


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