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J Clin Oncol. 2012 July 20; 30(21): 2664–2669.
Published online 2012 June 11. doi:  10.1200/JCO.2011.40.4772
PMCID: PMC3413278

Association Between Colonoscopy and Colorectal Cancer Mortality in a US Cohort According to Site of Cancer and Colonoscopist Specialty



We designed this study to evaluate the association of colonoscopy with colorectal cancer (CRC) death in the United States by site of CRC and endoscopist specialty.


We designed a case-control study using Surveillance, Epidemiology, and End Results (SEER)–Medicare data. We identified patients (cases) diagnosed with CRC age 70 to 89 years from January 1998 through December 2002 who died as a result of CRC by 2007. We selected three matched controls without cancer for each case. Controls were assigned a referent date (date of diagnosis of the case). Colonoscopy performed from January 1991 through 6 months before the diagnosis/referent date was our primary exposure. We compared exposure to colonoscopy in cases and controls by using conditional logistic regression controlling for covariates, stratified by site of CRC. We determined endoscopist specialty by linkage to the American Medical Association (AMA) Masterfile. We assessed whether the association between colonoscopy and CRC death varied with endoscopist specialty.


We identified 9,458 cases (3,963 proximal [41.9%], 4,685 distal [49.5%], and 810 unknown site [8.6%]) and 27,641 controls. In all, 11.3% of cases and 23.7% of controls underwent colonoscopy more than 6 months before diagnosis. Compared with controls, cases were less likely to have undergone colonoscopy (odds ratio [OR], 0.40; 95% CI, 0.37 to 0.43); the association was stronger for distal (OR, 0.24; 95% CI, 0.21 to 0.27) than proximal (OR, 0.58; 95% CI, 0.53 to 0.64) CRC. The strength of the association varied with endoscopist specialty.


Colonoscopy is associated with a reduced risk of death from CRC, with the association considerably and consistently stronger for distal versus proximal CRC. The overall association was strongest if colonoscopy was performed by a gastroenterologist.


Colorectal cancer (CRC) is common worldwide; population-based screening has been proposed to reduce morbidity and mortality from CRC. Screening with fecal occult blood testing or flexible sigmoidoscopy has been demonstrated in randomized trials to be effective for reduction of CRC deaths.14 Despite a lack of clinical trial data establishing effectiveness, colonoscopy is the most common method of CRC screening in the United States.5 In a US survey, 95% of primary care physicians recommended colonoscopy as the preferred CRC screening modality.6

Recently published cohort and case-control studies715 confirm an association between colonoscopy and CRC incidence/mortality. These studies also demonstrate greater effectiveness of colonoscopy in the distal colon and rectum versus the proximal colon; however, the mechanisms are unclear. Quality of colonoscopy may be important; poor-quality colonoscopy may reduce effectiveness, primarily in the proximal colon. Most studies were conducted outside the United States. Because, as suggested by some authors,16 the quality of colonoscopy in those studies may differ from colonoscopy in the United States, we designed this study using US data. We hypothesized that colonoscopy would be associated with decreased CRC mortality, the strength of the association would be greater for distal versus proximal cancer, and the strength of the association would vary with a surrogate marker of quality (endoscopist specialty).


Study Design

We designed a case-control study of the association of colonoscopy and CRC deaths. We measured odds of exposure to colonoscopy in cases (patients who died as a result of CRC) and controls (persons without cancer) and calculated an odds ratio (OR) for exposure.

Data Sources

We used Surveillance, Epidemiology, and End Results (SEER) cancer registry data linked to Medicare enrollment and utilization data.17 The National Cancer Institute–sponsored SEER program collects information on cancer incidence and survival from population-based registries in geographic areas representing 26% of the US population.18 Medicare provides health care for 97% of the US population age 65 years or older. Cancer cases reported to SEER have been matched to the Medicare enrollment file to facilitate research.17 The SEER-Medicare data include beneficiaries without cancer, derived from a random 5% sample of beneficiaries residing in SEER areas.

For Medicare patients not in managed care, SEER data and Medicare claims for hospitalizations, outpatient visits, and physician services are available. Claims submitted to Medicare using International Classification of Diseases Ninth Revision (ICD-9) procedure and diagnosis codes, Current Procedural Terminology (CPT) codes, and Healthcare Common Procedure Coding System Level II (HCPCS II) codes reflect medical services provided. Claims from outpatient facilities and physicians include Unique Physician Identification Numbers (UPIN) for providers.


We identified cases from SEER data (Fig 1) diagnosed with invasive CRC from January 1, 1998, through December 31, 2002, as their only cancer diagnosis in SEER. To identify patients who had CRC diagnosed outside SEER areas and were therefore not recognized as having CRC in the cancer registry, we excluded patients with hospital or physician claims in Medicare for CRC more than 6 months before the date of diagnosis (Appendix Table A1, online only). We included only patients who died of malignancy from January 1, 1998, through December 31, 2007, who were age 70 to 89 years at diagnosis. To ensure complete Medicare claims, patients had fee-for-service coverage and were enrolled in Part A and Part B from age 65 through diagnosis. After exclusions, we identified 9,458 cases. We planned to evaluate patients by site of primary CRC as assessed by SEER registrars (proximal cancer [proximal to the splenic flexure], distal cancer [splenic flexure to rectum], or unknown site). For secondary analyses, we stratified by age, sex, and race.

Fig 1.
Selection of cases. CRC, colorectal cancer; ICD-9, International Classification of Diseases, ninth revision; SEER, Surveillance, Epidemiology, and End Results.


From the SEER-Medicare noncancer sample, we selected people enrolled in Medicare Part A and B from age 65 years (controls). Cases and controls were matched for sex, year of birth, race, and SEER registry. For each potential matched control, we defined a date corresponding to the diagnosis date of the case, termed the “referent date.” We excluded controls who were enrolled in managed care or who had evidence of CRC in hospital or physician claims before the referent date. We excluded those who died before the date of death of the matched case. We randomly selected three controls from all potential matches and assigned them to a case, forming the control group.

Determining Exposure

We identified any colonoscopy using ICD-9, CPT, and HCPCS II codes (Appendix Table A1) appearing on hospital, outpatient clinic, or physicians' claims performed from January 1, 1991, to 6 months before the date of diagnosis/referent date. Any colonoscopy performed from date of Medicare enrollment was included as an exposure; every study participant had at least 4 years of potential exposure to colonoscopy (Appendix Table A1). We treated exposure to colonoscopy as binary: those who had at least one colonoscopy were considered exposed; for patients who had more than one colonoscopy, the first colonoscopy was considered the exposure.

Screening colonoscopy was not a Medicare-covered service for most of the exposure period. To exclude those colonoscopies performed to evaluate CRC symptoms, confirm diagnosis, or search for metachronous tumor, we excluded colonoscopies done within 6 months before the date of CRC diagnosis (referent date). To validate our choice, we recalculated the OR for the association of colonoscopy and CRC death for windows varying from 0 to 12 months. The ORs were similar for exclusion time periods ranging from 2 to 12 months (Appendix Fig A1, online only), suggesting that the inclusion of diagnostic colonoscopies had little effect on results and that a 6-month exclusion period was reasonable, as found previously.9 Medicare colonoscopy codes require that the colonoscope is inserted past the splenic flexure. Although a code for incomplete colonoscopy exists, it is rarely used, and our exposure therefore includes complete and incomplete colonoscopies.

Specialty of Colonoscopist

We determined the UPIN of the colonoscopist from physician and outpatient files and linked this to the AMA Physician Masterfile. The AMA Masterfile19 contains data for physicians in the United States, including information on physician specialty and UPIN. We determined physician specialty on the basis of primary and secondary specialties listed in the Masterfile. We considered the endoscopist to be a gastroenterologist if the primary or secondary specialty was gastroenterology or hepatology. We considered the endoscopist to be a surgeon if general surgery, colorectal surgery, abdominal surgery, or surgical oncology were the primary or secondary specialty. We classified an individual as a primary care provider if that person had a primary or secondary specialty of internal medicine, family practice, general practice, or geriatrics but not gastroenterology. For UPINs not matched to AMA data, we used provider specialty reported on the Medicare claim for the colonoscopy, classified in the same way. Providers not meeting these definitions were classified as “other.”

Determining Covariates

We controlled for factors potentially related to both CRC mortality and colonoscopy access. We determined comorbidities from diagnoses in hospital, physician, and outpatient files from 2 years to 1 month before the diagnosis/referent date. Comorbidities were classified by using comorbidities related to CRC mortality from Klabunde's comorbidity measurement algorithm for claims-based studies20 (we did not use an index; instead, we entered comorbidities directly into our models). Socioeconomic status was based on the median income at the ZIP code level, categorized in quintiles. Level of urbanicity was determined from the SEER file.

Statistical Analysis

We calculated descriptive statistics by case-control status. We performed conditional logistic regression, adjusting for individual comorbid conditions, socioeconomic status, and urban/rural status to calculate the adjusted OR for the association between colonoscopy and CRC death with 95% CIs, overall and stratified by cancer site. In a secondary analysis, we determined ORs between colonoscopy and CRC death according to provider specialty (gastroenterologist, surgeon, primary care provider, and other/missing v no colonoscopy). We then assessed whether CRC death was lower for gastroenterologists versus all other providers among individuals who underwent colonoscopy by directly comparing these corresponding ORs using a contrast statement (STATA, College Station, TX). We fit models stratified by sex, age (70 to 75 or > 75 years), and race (white, black, other) to determine whether the association was consistent between these groups.

With the exception of the STATA analysis, data were analyzed by using SAS, version 9.2 (SAS Institute, Cary, NC). All statistical tests were two-sided. The SEER-Medicare data are classified as exempt by the National Institute of Health's Office of Human Subjects Research.


We identified 9,458 cases (Fig 1) and selected 27,641 controls. For 431 cases, only two matching controls could be identified. For 151 cases, only one control could be matched. Median age at diagnosis was 80 years, and 57.4% of participants were women (Table 1). Colonoscopy data were available for a median of 9.4 years before diagnosis/referent date; 7,619 participants (20.5%) had a colonoscopy more than 6 months before the diagnosis/referent date.

Table 1.
Characteristics of Cases and Controls

CRC was proximal in 3,963 (41.9%), distal in 4,685 (49.5%), and unknown in 810 (8.6%) of cases. A total of 1,073 cases (11.3%) and 6,546 controls (23.7%) had colonoscopy more than 6 months before the diagnosis/referent date. Rate of colonoscopy in cases varied by tumor site (7.1%, distal; 15.7%, proximal; and 14.7%, unknown CRC site). The rate of colonoscopy in matched controls did not vary by site of primary CRC in the matched case (23.7%, distal; 23.7%, proximal; and 23.4% unknown site in controls matched to cases). Most colonoscopies (65.3%) were performed by gastroenterologists (Table 1). Cases were less likely than controls to have undergone colonoscopy (adjusted conditional OR, 0.40; 95% CI, 0.37 to 0.43; P < .001; Table 2); however, the association differed by site of primary CRC. The association was stronger for distal CRC (OR, 0.24; 95% CI, 0.21 to 0.27) than for proximal CRC (OR, 0.58; 95% CI, 0.53 to 0.64) or for cancer of unknown site (OR, 0.54; 95% CI, 0.43 to 0.68). In stratified analysis, the association between colonoscopy and the risk of CRC death was weaker in women (OR, 0.44) and older individuals (0.45; Table 3). There was a reduced risk of CRC death with colonoscopy irrespective of provider specialty (Table 4); however, the association was not uniform and was stronger if colonoscopy was performed by a gastroenterologist (OR, 0.35; 95% CI, 0.32 to 0.39) versus a surgeon (OR, 0.55; 95% CI, 0.47 to 0.64) or a primary care provider (OR, 0.43; 95% CI, 0.33 to 0.55). In direct comparison, colonoscopy performed by a gastroenterologist was significantly more protective for CRC death than colonoscopy performed by other providers (OR for colonoscopy performed by gastroenterologists v other specialties, 0.71; 95% CI, 0.62 to 0.81).

Table 2.
OR for Association Between Colonoscopy and CRC Mortality for Any Colonoscopy*
Table 3.
OR for Association Between Any Colonoscopy and CRC Mortality Stratified by Age, Sex, and Race*
Table 4.
OR for the Association Between any Colonoscopy and CRC Mortality by Specialty of Colonoscopist*


In our large, US population-based case-control study, colonoscopy was associated with an OR of 0.40 (95% CI, 0.37 to 0.43) for CRC mortality, indicating a substantial protective effect. The association was considerably stronger for distal CRC (OR, 0.24; 95% CI, 0.21 to 0.27) than for cancers elsewhere; however, the protective association with proximal CRC (OR, 0.58; 95% CI, 0.53 to 0.64) and CRC of unknown site (OR, 0.54, 95% CI, 0.43 to 0.68) indicate a clinically meaningful reduction in risk of CRC death with colonoscopy throughout the colon and rectum. The association between colonoscopy and the risk of CRC death was weaker in women and older individuals, groups more likely to have proximal CRC21,22 than men or younger individuals.

There have been many recent case-control studies810,1315 and cohort studies11,12 evaluating the association of colonoscopy with incidence and mortality from CRC; our findings are consistent with these studies. Case-control studies that use a mortality end point report OR for mortality from CRC associated with colonoscopy ranging from 0.45 (95% CI, 0.20 to 0.98) in the Netherlands8 to 0.69 (95% CI, 0.63 to 0.74) in Ontario, Canada.9 Cohort studies demonstrate similar findings. A stronger association between colonoscopy and CRC has been demonstrated when CRC incidence is the end point of interest.10,13,23 A recent case-control study from Germany15 found the OR for CRC incidence associated with colonoscopy was 0.19 (95% CI, 0.16 to 0.23). Many factors may account for the wide range in estimates of colonoscopy effectiveness. First, colonoscopy may have greater impact on CRC incidence than mortality; cancers developing from the adenoma to carcinoma sequence in an indolent fashion may be easier to detect and prevent than aggressive cancers that rapidly progress or develop de novo—an example of length time bias.24 The proportion of individuals in the control group who underwent colonoscopy in these studies ranges from 2.2%8 to 41%13; in our study, a relatively high proportion of the control group (24%) underwent colonoscopy. In populations with low baseline rates of colonoscopy, individuals undergoing colonoscopy may have higher risk of CRC incidence or mortality (for example, due to family history25) than those not undergoing colonoscopy. A study of colonoscopy effectiveness conducted in such a population may result in an estimate biased toward the null. In contrast, in populations with high rates of colonoscopy, those not undergoing screening may systematically differ from those screened in ways that increase the risk of CRC incidence and/or CRC death. For example, individuals with a healthy lifestyle may be more likely to undergo screening but may be at a lower risk of CRC than individuals not undergoing screening.26 A study conducted in such a population may result in an overestimation of the association between colonoscopy and CRC incidence and/or mortality.

Effectiveness of colonoscopy is dependent on detection and removal of cancer precursors and early detection of cancers.27 Poor-quality colonoscopy may result in failure to evaluate the entire colon or failure to detect cancer precursors. Many organizations16 and individuals28,29 have proposed inadequate performance as an explanation of the weaker-than-expected association between colonoscopy and CRC death found in the Canadian case-control study.9 Our study provides evidence to support a relationship between quality of colonoscopy and effectiveness; the association of colonoscopy with CRC mortality varied according to the specialty of the colonoscopist. The association was significantly stronger for colonoscopy performed by a gastroenterologist; gastroenterologists receive more extensive colonoscopy training during fellowship than physicians with other specialties.30 Given that colonoscopy is a complex skill with a long learning curve, quality of gastroenterologist-provided colonoscopy may be higher on average than colonoscopy provided by other providers, although at the individual level, there will be poor-quality performers who are gastroenterologists and high-quality performers who are not gastroenterologists. The relationship between provider specialty and colonoscopy effectiveness is supported by the literature. In the US Medicare population, colonoscopy performed by a gastroenterologist was more likely to result in the removal of polyps than colonoscopy performed by providers who are not gastroenterologists.31 Other authors have demonstrated an increased risk of CRC development within 3 years of colonoscopy performed by a provider who is not a gastroentologist.32,33

All observational studies, including ours, are at risk of confounding by unmeasured factors, and it is not possible to determine a precise estimate of the effectiveness of colonoscopy from such studies. However, the overall consistency of the literature is compelling; colonoscopy is effective for prevention of CRC mortality. Our study also demonstrated a marked difference in the strength of the association of colonoscopy with CRC death for proximally and distally located cancers, another remarkably consistent finding.913,15,34 What underlies this? Again, quality of colonoscopy has been proposed as a major mechanism13,16,35; however, our study demonstrates the relative difference in the strength of the association between colonoscopy and CRC mortality from proximal and distal cancers to be similar for gastroenterologists and providers who are not gastroenterologists. There are underlying differences in the biology of proximal and distal CRC neoplasia that may contribute to the variable effectiveness of colonoscopy. Proximal adenomas are often flat36 and harder to identify than pedunculated polyps that predominate distally. In addition, distal cancers are more likely to develop through the chromosomal instability pathway with the classic slow progression of adenoma to carcinoma36 than proximal colon cancers, potentially providing greater opportunity for colonoscopic detection.

We did not know the indication for colonoscopy. Since colonoscopy for CRC screening indications was not routinely reimbursed by Medicare before 2001, most colonoscopies in our study were performed for diagnostic purposes. To exclude colonoscopy performed for signs and/or symptoms of CRC resulting in a diagnosis, we included only colonoscopy performed more than 6 months before CRC diagnosis, an approach consistent with that of other studies in the literature.9 However, screening colonoscopies resulting in an immediate diagnosis of cancer were also excluded, potentially resulting in an overestimation of the strength of the association between colonoscopy and CRC mortality.37 The time period of exposure was chosen to ensure a sufficient time for follow-up after CRC diagnosis in the cases, and it is unclear how the change in Medicare reimbursement policy may have influenced our results. Of note, the proportion of colonoscopic procedures in the Medicare population associated with polypectomy did not change substantially between 199938 and 2003,31 indicating a similar CRC risk profile during this time period.

Lifestyle factors may be other important unmeasured confounders—individuals with a healthy lifestyle may be more likely to undergo colonoscopy despite being at a lower risk of death from CRC. More significantly, our study was not able to determine family history; individuals with a family history of CRC may be more likely to die of CRC and more likely to undergo colonoscopy. However, the cases for our study were diagnosed with CRC at a relatively advanced age, and thus confounding by family history is less likely to substantially influence our analysis. The age of cases was selected to ensure sufficient time to consider exposure to colonoscopy before diagnosis. We included any colonoscopy recorded in Medicare 6 months or more before the diagnosis/referent date as an exposure. Although cases and controls may have undergone colonoscopy prior to Medicare eligibility, the median time of potential exposure in our data was 113 months, and all cases and controls had a minimum of 5 years of potential exposure. We found that colonoscopy was a common procedure in our control group; 24% were exposed to colonoscopy and thus, at a minimum, our findings have important implications for those age 65 years and older.

Our study confirms that colonoscopy is effective for the prevention of CRC deaths in a US setting and that effectiveness is lower in the proximal colon. These findings have implications for cost-effectiveness analyses of CRC screening practices, particularly those comparing colonoscopy and flexible sigmoidoscopy.39 Our study also supports a growing body of literature demonstrating a relationship between specialized training in colonoscopy and effectiveness. Given the expense and risks associated with screening colonoscopy, ensuring quality through training, credentialing, and direct measurement should be an essential component of any CRC screening program.


Table A1.

Diagnostic and Procedure Codes

    Colorectal cancerSEER primary site codes 180-189 (excluding appendiceal 180.1), 199, 209
    IBDICD-9 codes 555.x, 556.x
Site of primary cancer
    ProximalSEER primary site codes 180-184 (excluding appendiceal)
    DistalSEER primary site codes 185-187, 199, 209
    Unknown siteSEER primary site codes 188, 189
    ColonoscopyICD-9 codes 45.23, 45.25, 45.42, 45.43
CPT codes 45378, 45379, 45380, 45382, 45383, 45384, 45385
Exclude if modifiers indicating incomplete (modifier code 52, 53, 73, or 74)
HCPCS Level II codes G0105, G0121
    Previous colorectal resectionsCPT codes 44140-44160, 44204, 44205, 45110-45126, 45160, 45170, 45190
ICD-9 codes 45.7x, 45.8, 46.1, 46.2, 48.3x, 48.4x, 48.5x, 48.6x

Abbreviations: CPT, Common Procedural Terminology; IBD, inflammatory bowel disease; ICD-9, International Classification of Diseases Ninth Revision; HCPCS, Health Care Procedure Coding System; SEER, Surveillance Epidemiology and End Results.

Fig A1.

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Object name is zlj9991025180002.jpg

Influence of the exclusion time period on the conditional odds ratio for the association between attempted colonoscopy and colorectal cancer mortality.


Supported by an Early Researcher Award from the Ontario Ministry of Research and Innovation (N.N.B.), by the National Cancer Institute, Bethesda, MD; the Cancer Care Ontario Health Services Research Chair, Ontario, Canada (held by N.N.B.); and by a grant from the Ontario Ministry of Health and Long-Term Care to the Institute for Clinical Evaluative Sciences.

V.P.D.-R. and M.J.B. had full access to all of the study data and take responsibility for the integrity of the data and the accuracy of the data analysis. No endorsement by the Institute for Clinical Evaluative Sciences or the Ontario Ministry of Health and Long-Term Care is intended or should be inferred.

Authors' disclosures of potential conflicts of interest and author contributions are found at the end of this article.


The author(s) indicated no potential conflicts of interest.


Conception and design: Nancy N. Baxter, Joan L. Warren, Therese A. Stukel, V. Paul Doria-Rose

Collection and assembly of data: Michael J. Barrett

Data analysis and interpretation: Nancy N. Baxter, Joan L. Warren, Michael J. Barrett, Therese A. Stukel, V. Paul Doria-Rose

Manuscript writing: All authors

Final approval of manuscript: All authors


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