Lysosomes are cellular organelles that contain acid hydrolase enzymes to break down waste materials and cellular debris. Autophagy is a lysosomal degradation pathway by which cytoplasmic components, such as damaged organelles and unused long-lived proteins, are digested within lysosome [
24]. There are at least three distinct types of autophagy pathways, including macroautophagy, chaperone-mediated autophagy, and microautophagy [
25]. Macroautophagy (referred to hereafter as autophagy) is a dynamic process by which cytoplasmic components are engulfed by an isolation membrane structure termed the phagophore, and then are sequestered in a double or multimembrane structure termed the autophagosome, which is finally delivered to the lysosome to form an autolysosome where their contents are degraded (). Potential sources for the phagophore include the Golgi complex, endosomes, ER, mitochondria, and plasma membrane [
26]. Although nonselective autophagy is the main autophagic degradation process, evidence of a more selective degradation of particular organelles (e.g. mitochondria) and intracellular bacteria/virus has been found. These processes have been termed mitophagy [
27], and xenophagy [
28,
29], respectively.
The molecular machinery that controls the autophagy pathway is extremely complex [
30,
31]. Over 30 different autophagy-related genes (ATGs) have been identified in yeast, and many of these are functionally conserved in higher eukaryotes. Autophagy is induced by the inhibition of mammalian target of rapamycin (mTOR) [
32], resulting in the formation of class III phosphoinositide 3-kinase (PI3KC3) -Beclin 1 (also known as Atg6 in yeast) core complex [
33], which mediates nucleation of the phagophore in autophagy. After that, two ubiquitin-like conjugation systems (Atg8 and Atg5-Atg12-Atg16) are essential for autophagosome formation. Microtubule-associated protein 1 light chain 3 (LC3), a homologue of Atg8 in yeast, is widely used to monitor autophagy by western blot analysis of turnover of LC3-I to LC3-II, and imaging analysis of LC3 puncta formation under co-treatment with inhibitors of early (e.g., 3-methyladenine) and late (e.g., chloroquine and bafilomycin-A1) autophagy [
34]. The lysosomal-associated membrane protein 1 (LAMP1) and LAPM2 and the small GTPase RAB7 are involved in autolyosomal formation.
As programmed cell survival mechanism, autophagy is critical in maintaining a range of normal human physiological processes, such as cellular homeostasis, energetic balance, development, and cellular defense against danger signals [
35,
36]. Conversely, autophagy is a double-aged sword, implicated in the pathogenesis of diseases including cancer, neurodegenerative diseases, aging, muscle diseases, infection, and immunity diseases [
37-
41].
The role of autophagy in cancer is extremely complex [
42-
46]. Decreased, increased, and mutant ATGs expressions are detected in various tumors. Autophagy was initially as an antioncogenic mechanism in the tumor, because heterozygous Beclin1
+/- mice develop spontaneous tumors [
47]. Moreover, deletion of other autophagy genes such as
UVRAG [
48],
Atg5 [
49] and
Bif [
50] in mice also increase tumorigenesis. It is believed that autophagy partly pro-motes cancer development through its ability to shape inflammatory reaction [
51], metabolic requirements [
52], and oxidative stress [
53]. In addition, autophagy has a pro-tumor growth effect in some cancers such as pancreatic [
12] and
BCR-Abl-mediated leukemogenesis [
54]. Thus, autophagy may play opposite roles in the early and late cancer development stages. One possible explanation for this difference is that the content of metabolic stress, immune response, and microenvironment is different. Autophagy and apoptosis share common stimuli, signal pathways, and regulators () [
55]. Interestingly, apoptosis, as a programmed cell death process, also has dual roles in regulation of tumorigenesis [
56]. The inter-relationship between autophagy and apoptosis might decide tumor cell’s fate. In many cases, blockage of autophagy sensitizes tumor cells to anticancer therapy, including chemotherapy, radiation, and immunotherapy [
57]. However, under certain conditions such as apoptosis deficiency, autophagy can also be pro-death, termed "autophagic cell death" [
58,
59].