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Logo of hhmipaAbout Author manuscriptsSubmit a manuscriptHHMI Howard Hughes Medical Institute; Author Manuscript; Accepted for publication in peer reviewed journal
 
J Neurosci. Author manuscript; available in PMC 2012 November 9.
Published in final edited form as:
PMCID: PMC3392151
HHMIMSID: HHMIMS377064

Emerging Gene Therapies for Retinal Degenerations

Introduction

Our most cherished sense, vision, begins with the process of phototransduction, a process carried out by the highly specialized photoreceptor cells of the retina, the rods and cones (Rodieck 1998). Rod photoreceptor cells are needed for night vision, as they are able to respond to very few photons, while cones are active under bright light conditions and are responsible for color vision. Many people are born with impaired vision, while many others experience loss of vision later in life. For example, age-related macular degeneration (AMD) occurs in approximately 5% of people at age 80 in the US, (Rudnicka et al. 2011), while mutations in >200 genes can lead to loss of vision in younger individuals (retnet:www.sph.uth.tmc.edu/Retnet). This review is focused on emerging strategies that employ gene therapy to combat vision loss, primarily due to mutations that affect photoreceptor cells. Exciting early results from the use of Adeno-associated virus (AAV) vectors in humans to combat Leber’s congenital amaurosis (LCA) (Bainbridge et al. 2008; Maguire et al. 2008), a relatively rare form of congenital blindness, has inspired several groups to employ AAV in a number of ways to combat other genetic diseases. Here, the efforts aimed towards one particular disease, retinitis pigmentosa (RP) (Hartong et al. 2006), will be covered, as there are excellent animal models (Rivas and Vecino 2009; Fletcher et al. 2011), and it offers some straightforward possibilities to save photoreceptor function and/or photoreceptor cells themselves. Ironically, one of the possibilities is to use optogenetics, rather than gene replacement or knock-down, for restoration of vision (Busskamp and Roska 2011). It is hoped that we can apply the lessons learned from RP to other diseases that also result in loss of photoreceptor cells, including AMD.

Individuals with RP are typically born night blind, due to rod dysfunction, but initially have full field, high acuity color vision. This is in keeping with the expression of many RP disease genes only in rods (retnet:www.sph.uth.tmc.edu/Retnet). For reasons that are still unclear (see below), loss of color vision then follows, and can occur early, e.g. 5 years of age, or much later, in the 5th or 6th decade of life (Hartong, Berson et al. 2006; Berson 2008). The progression of cone dysfunction and death eventually leads to total loss of vision, with the final loss in the center, due to loss of macular vision. The macula comprises only cones in its very center, and is the area of our highest acuity color vision. Invasion of retinal pigmented epithelial cells into the retina leads to the occurrence of black clumps within the retina, and hence the name of the disease. Attenuated retinal blood vessels and optic disc pallor are other hallmarks of the disease (Milam et al. 1998; Berson 2008). There is no cure for RP, but there are several lines of therapeutic approaches that hold promise, including gene therapy.

Overview of Therapeutic Approaches to RP

Since many RP genes are expressed only in rods, one line of genetic therapy is to provide rods with a wild type allele of a recessive disease gene, or to provide for an allele-specific loss of function (RNAi or ribozyme), in the case of a dominant disease gene. Vectors expressing such genes or knock-down cassettes have been developed and tested in animal models (LaVail et al. 2000; Schlichtenbrede et al. 2003; Pang et al. 2008; Chadderton et al. 2009; Raz-Prag et al. 2009; Palfi et al. 2010; Zou et al. 2011). While this approach may be successful for individual disease genes, and is a good one to establish the use of gene therapy vectors for ocular diseases, it likely will not be possible to extend such a targeted approach to all disease genes. The cost of clinical trials for gene therapy is quite high, and the number of individuals that can be treated for any individual disease gene is small. A more cost effective strategy would be to develop therapies that can be used for people who have any of a larger number of disease genes. A generic way to prolong rod survival, even without rescuing their function, should prohibit the onset of cone death, which follows rod death. Similarly, gene therapy directly targeting cones to promote their function/survival should enable the treatment of many individuals.

As mentioned above, as rods malfunction and die, there is a loss of cone function, followed by cone death. Several models for cone death in RP have been proposed, and recently reviewed (Punzo et al. 2011). Rods may supply a needed factor or factors for cone survival (Leveillard et al. 2004). This sets up a possible therapy, i.e. delivery of a growth factor, which is an approach currently in clinical trials (Sieving et al. 2006). Another class of models concerns toxicity due to rod death (Ripps 2002). The release of a toxic factor by dying rods might kill the nearby cones. We believe that the kinetics of rod and cone death make this latter model unlikely (Punzo et al. 2009). If dying rods released a toxin, one would predict that there would be a close temporal and spatial association of rod and cone death. However, cone death often does not occur until many months after rod death (Carter-Dawson et al. 1978; Milam, Li et al. 1998; Berson 2008; Lin et al. 2009; Punzo et al. 2009). Another model holds that there is an increase in oxidative damage to cones once the rods have died (Yu et al. 2004; Shen et al. 2005; Komeima et al. 2006). This model also suggests a therapy, that is, delivery of anti-oxidants or genes encoding anti-oxidation enzymes. Finally, we recently proposed that the cones have a nutrient shortage and/or imbalance in metabolism due to a change in retinal architecture, brought on by the loss of the rods (Punzo, Kornacker et al. 2009; Punzo, Xiong et al. 2011).

The current strategies which might be more generic in their application, and which utilize gene therapy, are considered in more detail below. Other approaches, such as engraftment of retinal neurons derived from stem cells, (Comyn et al. 2010; Bermingham-McDonogh and Reh 2011; Rowland et al. 2012), and implantation of prosthetic devices (Chader et al. 2009), also are being developed, but are beyond the scope of this Review. It is likely that some very effective therapies will be combinatorial, such as engineering engrafted photoreceptor cells to secrete growth factors. An example of a combinatorial strategy, one which combines sophisticated electronic devices with AAV-mediated delivery of a light-sensitive protein, will be described further below.

Treatment with Growth Factors

An attractive model for cone death posits that there is loss of a trophic factor for cones that is made by rods (Mohand-Said et al. 1998; Mohand-Said et al. 2000; Leveillard and Sahel 2010). Sahel and colleagues (Fintz et al. 2003; Leveillard, Mohand-Said et al. 2004) discovered a candidate for such a factor, RdCVF (rod-derived cone viability factor (also named nucleoredoxin 1, Nxn1)). Characterization of a recent mouse knock-out for this gene showed that cones in the mutant are more susceptible to oxidative damage (Cronin et al. 2010). Interestingly, this gene has a domain with homology to thioredoxin, which has a role in establishing the redox state of cells through a thiol-oxydoreductase activity. However, a short isoform of RdCVF, which does not have the thiol-oxydoreductase activity, is nonetheless able to promote cone survival (Leveillard, Mohand-Said et al. 2004). RdCVF protein has been injected into the eye of an RP rat model where it has shown survival promoting activity for cones, along with preservation of cone activity (Yang et al. 2009). However, the protein is difficult to purify, and frequent delivery of any protein is problematic. Currently, an AAV vector is being developed to bypass the problem of protein purification and delivery (J. Sahel, personal communication).

Other growth factors have been tested by injection of the factors themselves into genetic models, or into retinas where photoreceptor cells have been acutely damaged by light (e.g. see (LaVail et al. 1998)). BDNF, CNTF, bFGF, and PEDF have activity when delivered to the subretinal space. CNTF is the factor that is furthest along (Wen et al. 2011), as it is now in clinical trials for RP (Sieving, Caruso et al. 2006; Raz-Prag, Zeng et al. 2009; Talcott et al. 2011), and AMD (Zhang et al. 2011). It also shows survival promoting activity for retinal ganglion cells, the cell type affected in glaucoma (Hellstrom and Harvey 2011). CNTF is being delivered by encapsulated cells which secrete the factor (Tao 2006). The semi-permeable membrane containing the cells is inserted into the ciliary margin, where it does not interfere with vision. This arrangement allows for the possibility of removal should any untoward effects develop.

Treatment with Antioxidants

As mentioned above, oxidative stress has been suggested as one of the causes of cone dysfunction and death in RP (Yu, Cringle et al. 2004; Shen, Yang et al. 2005; Komeima, Rogers et al. 2006). As the rods die in RP, the flow of oxygen from the choroidal circulation does not abate, and thus each cone is exposed to increasing amounts of oxygen (Yu et al. 2000; Yu, Cringle et al. 2004). Studies of the levels of oxidized proteins, nucleic acids, and lipids have shown that oxidative damage indeed increases during the course of RP (Shen, Yang et al. 2005; Komeima, Rogers et al. 2006). Oxidative stress is likely not only correlated with photoreceptor degeneration in RP, but contributes to it. Cone death was slowed in several mouse models of RP that were treated with exogenous antioxidants (Komeima, Rogers et al. 2006; Komeima et al. 2007). AAV delivery of endogenous antioxidant enzymes, including superoxide dismutase and glutathione peroxidase, in some RP mouse models decreased oxidative damage and prolonged cone survival (Lu et al. 2009; Usui et al. 2009). Also in keeping with the beneficial effects of antioxidant enzymes, a recent study showed that low dose irradiation prolonged photoreceptor survival (Otani et al. 2012). The gene encoding the anti-oxidation enzyme, peroxiredoxin 2, was upregulated by this treatment, and its activity was required for the survival promoting effect. Gene therapy directed to the photoreceptor cells will solve one problem posed by the delivery of chemical anti-oxidants through, e.g. the diet. The blood-retinal barrier, and the soluble nature of many of these compounds, does not enable a high, steady state level of the anti-oxidants in the retina. Moreover, ROS are important signaling molecules and a wholesale decrease in ROS might not be without side effects, particularly with exposure of the entire body to these chemicals (Finkel 2003). Viral gene delivery, ideally coupled with a cone-specific promoter, might provide a more effective approach, one that might be especially beneficial if the promoter was also regulated by the oxidation level of the tissue. Such vectors are being developed for use in other diseases and could be adapted for use in RP (Qi et al. 2007; Koilkonda et al. 2010).

Optogenetics

Seven transmembrane proteins that can capture the energy of light are ancient proteins which have evolved into many different forms. Some of these proteins are ion channels, some are ion pumps, and some are able to initiate a signal transduction cascade that can lead to changes in membrane polarization (Bamann et al. 2010; Zhang et al. 2011). Our own opsin proteins partner with a chromophore, 11-cis-retinal, to give our photoreceptor cells light sensitivity. Following a successful isomerization reaction, there is a series of signal transduction events that amplify this initial signal to the point where neurotransmitter release is altered. Rods and cones transduce the light signal so as to hyperpolarize, and thus reduce their rate of release of glutamate. An archaebacterium, Natronomonas pharaonis, uses its light sensitive protein, halorhodopsin (NpHR), in a similar manner, as it too hyperpolarizes in response to light. In this case, the protein is a chloride pump, and thus does not need the elaborate signal transduction cascade used by photoreceptor cells. Another light sensitive channel, channel rhodopsin2 (ChR2), from Chlamydomonas rheinhardtii, is a light activated ion channel which triggers depolarization by the passage of sodium and other positively charged ions. When expressed in a neuron, this channel mimics neuronal activation. The utility of ChR2 for light activation of neurons has been exploited for many basic science applications (Kolstad et al. 2010; Fenno et al. 2011), and more recently, is being considered for clinical applications.

The optogenetic approaches target several different cell types within the retina: the photoreceptor cells (Busskamp et al. 2010), the bipolar interneurons (Lagali et al. 2008; Doroudchi et al. 2011), and the ganglion cells (Bi et al. 2006; Lin et al. 2008; Ivanova and Pan 2009; Zhang et al. 2009; Ivanova et al. 2010) (Table 1, Figure 1). The retina has evolved a complex set of circuits (Gollisch and Meister 2010), involving over 60 cell types (Masland 2001). It is not a camera, nor is it a simple filter that passes on fairly raw information to the brain. The information transformations carried out by the local retinal circuits are still being discovered, as are the patterns of connections within these circuits. The type of information that is transmitted is highly processed to extract features of value to the organism. For example, there are multiple circuits that signal the direction of motion, or predict the path of an object in motion, or signal that an object is approaching. All of these circuits work with the initial signals emanating from photoreceptor cells. These signals are passed through bipolar interneurons, then onto to the output cells, the ganglion cells, with inhibition along the way from horizontal cells and the many types of amacrine cells. Thus, when considering how to use optogenetics to preserve as much vision as possible, it is best to initiate the signal in photoreceptor cells, so as to utilize all of the downstream processing. In RP, histological characterizations suggested that the inner retinal cells survived for quite some time, even after photoreceptor death (Santos et al. 1997; Mazzoni et al. 2008; Sekirnjak et al. 2009). It was not known, however, if the circuits were still functional, particularly as changes in the processes of inner retinal cells had been noted (Marc et al. 2003). The studies using AAV to deliver optogenetic proteins to different retinal cell types suggest that indeed, at least some of the circuits are still functional, even after most photoreceptor cells have died.

Table 1
Optogenetic genes delivered to the retina. ChR2 = channel rhodopsin 2, GFP = green fluorescent protein, NpHR = halorhodopsin, YFP = yellow fluorescent protein, WT = wild type, rd1 = retinal degeneration 1, with a mutation in the phosphdiesterase beta ...

Delivery of NpHR to cone photoreceptor cells

As mentioned above, mammalian photoreceptor cells hyperpolarize in response to light, after triggering an elaborate signal transduction cascade. NpHR also leads to hyperpolarization upon light stimulation, by pumping chloride. Roska and colleagues used AAV to deliver NpHR to the cones in two RP mouse models (Busskamp, Duebel et al. 2010). Virus was delivered after the point when the cones stopped carrying out their own light responses. The treated retinas were able to utilize the remaining inner retinal circuitry to give the mice several hallmarks of vision, including motion detection and dark-light discrimination. Moreover, the NpHR did not elicit an immune response nor lead to toxicity after >1 year in vivo. It has also been introduced into human retinal explants, where it was shown to permit light detection. However, for application to humans, this approach will need to be augmented to compensate for the lower sensitivity of NpHR. The sensitivity of the current alleles of NpHR is good enough to permit vision in bright outdoor light conditions, but it is still too low to permit useful vision in e.g. room light. To increase sensitivity, a specialized set of glasses can be worn. These glasses will have an array of sensitive light detectors, much like the detectors in a conventional video camera. The detectors can drive an array of micro LEDs which can then emit the proper wavelength and intensity of light (Grossman et al. 2010) to activate the NpHR that has been transduced into the cones via AAV. This work if moving forward towards a Phase 1 clinical trial, and will be using AAV with NpHR driven by a human cone promoter (Roska et al, personal communication).

Delivery of ChR2 to ON bipolar cells

Bipolar cells and horizontal cells are the initial synaptic partners of photoreceptor cells. Bipolar cells can be classified into the ON and OFF classes. The ON bipolar cells release glutamate when light is on, when their glutamate signal from photoreceptor cells is low, due to the action of a metabotropic glutamate receptor, Grm6. A promoter for Grm6 was used to express ChR2 either following electroporation (Lagali, Balya et al. 2008) or injection of an AAV vector (Doroudchi, Greenberg et al. 2011), into an RP mouse model. Expression was restricted to ON bipolar cells, which constitute more than 50% of the bipolar cells in the retina. The downstream circuitry appeared to be functional in that the mice exhibited light guided behavior, including motion detection and light-dark discrimination. This strategy too is being developed for human clinical trials, with encouraging signs in that toxicity studies performed in mice showed no toxicity (Doroudchi, Greenberg et al. 2011).

Delivery of ChR2 to ganglion cells

Retinal prosthetics which employ a light sensitive chip have been implanted into diseased eyes, to bypass the need for either photoreceptor cells or interneurons (Chader, Weiland et al. 2009). One strategy is to stimulate the ganglion cells directly using the electronic signals initiated with light sensing by the chip. A biological solution for the same strategy is to use a light sensitive protein, such as ChR2 or melanopsin, expressed in ganglion cells.

Melanopsin, a rhabdomeric type of opsin, was discovered to be expressed in the mammalian eye, in approximately 0.5% of retinal ganglion cells in the mouse (Do and Yau 2010). These cells project to the suprachiasmatic nucleus and are important for the photoentrainment of the circadian rhythm. As many additional projections are seen, it is likely that they participate in other types of information processing as well. The majority of retinal ganglion cells involved in vision do not express melanopsin, and they project to the lateral geniculate nucleus and superior colliculus. Lin et al. delivered melanopsin to the large number of retinal ganglion cells which do not normally express it (Lin, Koizumi et al. 2008). They delivered the gene using an AAV vector injected into the vitreous body, which borders the ganglion cell layer. The RP mice so treated were able to perform a visual discrimination task as well as avoid light. However, melanopsin has slow kinetics, too slow for such activities as motion detection. Still, the ability to discriminate light and dark will be welcomed by individuals who are otherwise unable to do so.

ChR2 exhibits faster kinetics than melanopsin. It too was delivered to retinal ganglion cells using intravitreal injections of AAV. Marmosets, rats, and mice have been infected with AAV transducing ChR2 (Bi, Cui et al. 2006; Ivanova and Pan 2009; Zhang, Ivanova et al. 2009; Ivanova, Hwang et al. 2010). All of the groups used physiological recordings to demonstrate responses to the appropriate wavelengths of light. In addition, Bi et al. could find evoked potentials in the visual cortex of infected wild type and rd1 mice, demonstrating transmission of retinal ganglion cell signals (Bi, Cui et al. 2006). Zhang et al. also delivered NpHR, in some cases, to the same retinal ganglion cells as were transduced by ChR2 (Zhang, Ivanova et al. 2009). Recording from such doubly expressing cells gave depolarization or hyperpolarization in response to the wavelengths that normally activate these two opsins.

An exciting possibility building upon this strategy is being developed by several groups (Nirenberg 2010; Freeman et al. 2011). They are delivering ChR2 to retinal ganglion cells, also via AAV, but hope to make the signals from these transduced retinal ganglion cells more informative to the brain by using the normal coding mechanisms of retinal ganglion cells. The patterns of action potentials from different types of retinal ganglion cells receiving different types of input from retinal circuits is thought to encode much of the information distilled from the visual scene (Jacobs et al. 2009). They plan to use a camera which will transform the signals from a visual scene into light flashes that will, when flashed onto the transduced retinal ganglion cells, stimulate the ganglion cells to fire in a more meaningful way. If this can be correctly engineered using the growing appreciation of the rules which govern the coding of information by retinal ganglion cells, it could be a very exciting development for people who have lost all of their photoreceptor cells.

Acknowledgements

I would like to thank Claudio Punzo and Wenjun Xiong for their suggestions regarding the manuscript, and Santiago Rompani for help in preparing Figure 1. I am also grateful for stimulating discussions with many colleagues who work in the area of retinal degenerations, particularly Botond Roska, Jean Bennett, Elliot Berson, Bo Chen, Claudio Punzo, Wenjun Xiong, and Yashodore Chinchore. I am also grateful for the support of the Howard Hughes Medical Institute, The Foundation Fighting Blindness, The Retina Research Foundation, and the Edward N. & Della L. Thome Memorial Foundation.

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