Alterations in GABA-related transcripts across subject groups
Quantification of the expression levels of GAD67, GAD65, CR, PV, and SST by real-time qPCR in 19 subject triads revealed that the rank order of the mean relative expression levels of each transcript in normal control subjects closely matched the previously reported mean expression levels of these mRNAs (
Hashimoto et al. 2008), with SST having the highest levels of expression, CR having the lowest levels of expression, and PV, GAD65 and GAD67 having intermediate expression levels ().
We did not find any significant effects of diagnosis on GAD67, GAD65, or CR mRNA levels (). In contrast, there was a main effect of diagnosis on the mean expression levels of PV mRNA (F2,56 = 10.73, adjusted p < 0.001) (). Post-hoc analyses revealed a significant reduction in mean PV mRNA expression in BPD subjects compared to normal controls (–18%, p = 0.004) and MDD subjects (–20%, p = 0.001) (), but no significant difference between normal controls and MDD subjects (p = 0.88).
Diagnosis showed a non-significant decrease in mean expression levels of SST mRNA (
F2,56 = 2.69,
p = 0.07) (). However, SST also displayed a 3–5 times greater variability within groups (mean co-efficient of variation, CV
SST = 0.18), compared to the other four genes (CV
GAD65 = 0.04, CV
GAD67 = 0.05, CV
CR = 0.06, CV
PV = 0.06). Since SST transcript levels are known to markedly decrease with age (about –60% between ages 20 and 70 yr;
Erraji-BenChekroun et al. 2005), we investigated the contribution of subjects’ age as the potential source of the observed SST variability. In the ANCOVA model including all three subject groups, age was a significant determinant of expression levels (
F1,56 = 7.85,
p = 0.007). This effect appeared driven by control subjects, as they displayed significant correlation between age and SST mRNA expression (
r = –0.86,
p = < 0.00001) (). In contrast, SST transcript levels were not significantly correlated with age in either subjects with BPD (
r = –0.09,
p = 0.72) or with MDD (
r = –0.39,
p = 0.10) (). As a consequence, 84% of MDD subjects and 63% of BPD subjects displayed SST expression levels below the age-related trend line of control subjects (), consistent with a lower, age-corrected level of SST mRNA expression for most MDD and BPD subjects. Due to the inability of
post-hoc analyses to correct for covariates (i.e. age), we performed three separate one-way ANCOVA comparisons with normal controls and subjects with BPD or MDD. Results indicated a non-significant reduction in the mean expression level of SST mRNA in BPD subjects compared to normal controls (–14%;
F1,37 = 2.83,
p = 0.10) (). In MDD subjects, the mean expression level of SST mRNA was significantly reduced compared to normal controls (–18%;
F1,37 = 8.95,
p = 0.005) (). Mean SST mRNA expression did not differ between BPD and MDD subjects (
F1,37 = 0.169,
p = 0.68).
Exploratory analyses of potential effect of other factors on GABA-related transcript expression
Although we corrected for significant cofactors, such as age, in the results described above, there is interest in exploratory analyses of multiple co-factors, as these analyses can reveal underlying trends for further investigations in follow-up studies. Given that these assessments required subdividing the subject cohort, the resulting sample sizes may be underpowered to detect significant differences. Hence, values indicated here are not corrected for multiple testing, and should be considered exploratory.
We compared the mean expression of PV mRNA in subjects with BPD () and the mean expression of SST mRNA in subjects with BPD () or MDD () as a function of several cofactors of interest. The expression of PV mRNA in BPD subjects did not differ as a function of sex, death by suicide, antidepressant medication use at time of death (ATOD), use of benzodiazepines or sodium valproate ATOD, diagnosis of substance abuse or dependence ATOD, use of selective serotonin reuptake inhibitors (SSRIs) ATOD, or history of psychosis (all F ≤ 1.72, p ≥ 0.21) (). Furthermore, the expression of SST mRNA in the BPD subjects did not differ as a function of sex, death by suicide, antidepressant medication use ATOD, use of benzodiazepines or sodium valproate ATOD, antipsychotic medication use ATOD, diagnosis of substance abuse or dependence ATOD, or history of psychosis (all F ≤ 2.27, p ≥ 0.16) (). Only two subjects with BPD were on lithium at time of death and hence we did not attempt to look for an effect of lithium. Finally, the expression of SST mRNA in the MDD subjects did not differ as a function of sex, death by suicide, use of antidepressant medication ATOD, antipsychotic medication use ATOD, diagnosis of substance abuse or dependence ATOD, or history of psychosis (all F ≤ 2.03, p ≥ 0.18) ().
Effect of antipsychotic medication use ATOD on PV mRNA expression
There was a significant effect (uncorrected p value) of antipsychotic medication use ATOD on PV mRNA expression (F1,12 = 10.22, p = 0.01) in the BPD subjects (); however, when we restricted our examination of PV mRNA expression to BPD subjects that had no antipsychotic medication use ATOD and their matched controls (n = 12 pairs), there was only a trending significant reduction in PV mRNA expression in subjects with BPD (9%; F1,17 = 4.24, p = 0.055) ().
Effect of benzodiazepines or sodium valproate ATOD on SST mRNA expression
There was a significant effect (uncorrected p value) of benzodiazepines or sodium valproate use ATOD on SST mRNA expression (F1,12 = 8.43, p = 0.01) in the MDD subjects (). When we restricted our examination of SST mRNA expression to MDD subjects that had no benzodiazepines or sodium valproate use ATOD and their matched controls (n = 15 pairs), there was a significant reduction in SST mRNA expression in subjects with MDD (13%; F1,23 = 4.52; p = 0.04) ().
Effect of SSRI use on SST mRNA expression
There was a significant effect of using SSRIs ATOD on SST mRNA expression in subjects with BPD (F1,12 = 4.72, p = 0.05) () and MDD (F1,12 = 7.57, p = 0.02) (). When we restricted our examination of SST mRNA expression to BPD subjects that had no use of SSRIs ATOD and their matched controls (n = 10 pairs), there was no significant reduction in SST mRNA expression in subjects with BPD (F1,13 = 0.70, p = 0.42) (). In contrast, when we restricted our examination of SST mRNA expression to MDD subjects that had no use of SSRIs ATOD and their matched controls (n = 14 pairs), there was a significant reduction in SST mRNA expression in subjects with MDD (12%; F1,21 = 4.32, p = 0.05) ().
Reduced prepro-SST protein levels in MDD subjects
To confirm whether decreased SST mRNA translated to decreased protein level, we investigated tissue content level of the prepro-peptide for SST, since the active processed forms of SST rapidly degrades during the PMI (
Hayes et al. 1991). The prepro-SST immunoreactive band () migrated at the expected size and was absent in SST-KO mice (). Prepro-SST single was not correlated with PMI (
R = 0.12,
p = 0.41) and displayed a moderate correlation with RNA levels (
R = 0.26,
p = 0.05). Analyses by subgroups resulted in non-significant effects due to low sample size, but suggested a de-correlation between RNA and protein in MDD subjects (controls:
R = 0.23,
p = 0.34; MDD:
R = 0.03,
p = 0.90). A non-significant inverse correlation was observed with age (
R = –0.19,
p = 0.15) across all subjects and was similarly low for control and MDD subjects (controls:
R = –0.20,
p > 0.05; MDD:
R = –0.23,
p > 0.05). The SST prepro-peptide was robustly decreased by 31.5% in MDD subjects compared to controls (Stouffer's z score test on ANCOVA results,
p = 3 × e
–6) (). In contrast, no changes were observed in BPD (–2.0%,
p = 0.32) (). Exploratory analyses of co-factors in the MDD group did not reveal any effects or trends: suicide (–43%)
vs. non-suicide (–31%); antidepressant (–39%), SSRI only (–35%)
vs. no antidepressant (–33%); benzodiazepines or sodium valproate (–39%)
vs. no exposure (–35%); antipsychotic (–35%)
vs. no exposure (–35%) (mean difference; all
F ≤ 2.0, uncorrected
p > 0.05).