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J Clin Invest. 2012 July 2; 122(7): 2359–2368.
Published online 2012 June 1. doi:  10.1172/JCI62923
PMCID: PMC3387817

Fatal breathing dysfunction in a mouse model of Leigh syndrome


Leigh syndrome (LS) is a subacute necrotizing encephalomyelopathy with gliosis in several brain regions that usually results in infantile death. Loss of murine Ndufs4, which encodes NADH dehydrogenase (ubiquinone) iron-sulfur protein 4, results in compromised activity of mitochondrial complex I as well as progressive neurodegenerative and behavioral changes that resemble LS. Here, we report the development of breathing abnormalities in a murine model of LS. Magnetic resonance imaging revealed hyperintense bilateral lesions in the dorsal brain stem vestibular nucleus (VN) and cerebellum of severely affected mice. The mutant mice manifested a progressive increase in apnea and had aberrant responses to hypoxia. Electrophysiological recordings within the ventral brain stem pre-Bötzinger respiratory complex were also abnormal. Selective inactivation of Ndufs4 in the VN, one of the principle sites of gliosis, also led to breathing abnormalities and premature death. Conversely, Ndufs4 restoration in the VN corrected breathing deficits and prolonged the life span of knockout mice. These data demonstrate that mitochondrial dysfunction within the VN results in aberrant regulation of respiration and contributes to the lethality of Ndufs4-knockout mice.


Leigh syndrome (LS), a progressive neurodegenerative disorder (1), is the most common infantile mitochondrial disorder, affecting 1 in 40,000 live births (2). MRI reveals bilateral hyperintense lesions in many brain regions of LS patients (3, 4) that correlate with gliosis, demyelination, capillary proliferation, and/or necrosis (5). Behavioral symptoms of LS patients vary widely, but can include developmental retardation, hypotonia, ataxia, dystonia, optic atrophy, hearing impairment, breathing abnormalities, dysarthria, swallowing difficulties, and failure to thrive (3, 6, 7). Respiratory arrest, the most common cause of death for LS patients, is observed in up to 75% of cases (8, 9). The necessity for mechanical ventilation or the occurrence of sudden death of LS patients is associated with brain stem lesions (3, 10). However, case report data are usually scarce, and the mechanisms involved in the respiratory apnea in LS cases are unclear. The lack of a genetic model to study disease progression and the cause of death has impeded a rigorous investigation.

The most prevalent mitochondrial disorders affect complex I (1113), and complex I deficiencies are detected in many LS patients (4, 14, 15). Mutations in the nuclear gene encoding in NDUFS4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4), one of the 45 subunits of complex I, have been described as causing LS in humans (1620). Human LS patients harboring NDUFS4 mutations develop brain stem and basal ganglia lesions and die from cardiorespiratory failure at an early age, with marked apneic episodes in the majority of cases along with a minor presence of hypertrophic cardiomyopathy (21). We developed a line of mice in which the Ndufs4 gene can be inactivated by Cre recombinase (22). Here, we delineate the cause of death of Ndufs4-deficient mice and develop a gene therapy strategy.


KO mice develop symptoms similar to those of humans with NDUFS4 mutations.

Mice with both alleles of the Ndufs4 gene inactivated in all cells or just in the CNS manifest a fatal progressive encephalopathy and behavioral characteristics similar to those of people with LS, especially those with NDUFS4 mutations (2123). The similarities include failure to thrive, growth retardation, ataxia, hypotonia, visual problems, and breathing irregularities (Table (Table1).1). Brain lesions detected by imaging and histology are also similar (24).

Table 1
Clinical observations in LS and Ndufs4-KO mice

Brain lesions in KO mice are detected by MRI and gliosis.

T2-weighted MRI reveals edematous regions as a hyperintense signal that is a primary diagnostic sign for LS. Of 5 KO mice examined, 2 mid-stage and 2 late-stage mice (as defined in the methods section) had hyperintense lesions in the deep cerebellar fastigial nucleus (FN), cerebellar lobes (predominantly posterior lobes such as VIII, IX, X, but extending to anterior lobes in late-stage animals), the external plexiform layer of the olfactory bulb (OB), and the dorsal medulla in either sagittal or coronal views that are not seen in control mice (Figure (Figure1A).1A). Lesions in the dorsal medulla appear to be in the vestibular nucleus (VN) (Figure (Figure1B).1B). Gliosis develops progressively in these same brain regions, as revealed by immunostaining with antibodies that detect glial reactivity. For example, immunostaining for glial markers reveals extensive bilateral neuroinflammation in the VN of KO mice (Figure (Figure1C).1C). Neurons with cytoplasmic vacuoles and aberrant mitochondria containing condensed cristae as well as microglia engorged with cytoplasmic remnants were observed at the ultrastructural level in the same brain regions (23). The severe encephalopathy leads to a shortened life span with greater than 90% mortality by P50 (Figure (Figure1D).1D).

Figure 1
Alterations in MRI and histopathology in KO mice.

KO mice have abnormal respiratory responses.

KO mice are small and manifest hypothermia, ataxia, lethargy, and sensory abnormalities (22, 23). The cerebellar and VN lesions could easily account for the ataxia, but the underlying cause of the other symptoms and death remained enigmatic until we observed intermittent breathing irregularities. KO mice lose most of their hair at approximately P20, which facilitates observing breathing irregularities that include hypo- or hyperventilation and gasping (Supplemental Video 1; supplemental material available online with this article; doi: 10.1172/JCI62923DS1). The appearance of gasping-like episodes was commonly observed under more stressful conditions, for example, when mice were handled.

To delineate respiratory responses of KO mice, we used barometric, whole-body, flow plethysmography to record the breathing of unanesthetized, freely moving KO and control mice (Figure (Figure2A).2A). Under normoxic conditions (20.9% O2), neonate (P8–P12) and older (>P30) KO mice had normal respiratory frequency (fR); however, they had significantly higher tidal volume (VT) and minute ventilation (VE = fR × VT) compared with control mice of the same age (Figure (Figure2,2, B and C). KO mice had intermittent episodes of apnea (cycle time [TTOT] exceeding twice the length of the mean) and periods during which fR was very irregular, as measured by the irregularity score (IS) (24). These abnormalities increased with age (r2 = 0.50; P = 0.02 for the number of apneas and for IS, r2 = 0.64; P < 0.01; Figure Figure2,2, D and E). In response to hypoxia (5 minutes at 10% O2), there was an initial augmentation of breathing followed by a depression. Both neonate and older KO mice had equivalent augmentation of breathing, but much more severe depression in VT and VE compared with control mice (Figure (Figure2F).2F). Although variable, some KO mice also had an abnormal response to excess CO2 (hypercapnia; 5 minutes at 5% CO2). Six out of 13 (neonate and adult) KO mice failed to show the hyperventilation response that was observed in all 6 control mice. Interestingly, the remaining 7 KO mice had an exaggerated response compared with control mice (Supplemental Table 1).

Figure 2
Abnormal breathing patterns of KO mice.

We also measured breathing rate, heart rate, and arterial oxygen saturation in control and KO mice at various stages of disease progression by optical spectrometry in restrained animals. As with the plethysmography, breathing rate was variable, but with this method it was significantly lower in KO mice than in control mice (~150 vs. ~220 breaths/min, KO vs. control; P < 0.001). This discrepancy between methods may be explained by the stress induced by restraint. Furthermore, the reduction in breathing rate was more evident in later stages of the disease (Figure (Figure3,3, A and B, P < 0.05). Likewise, heart rate for KO mice was lower than for control mice (~500 vs. ~650 beats/min, KO vs. control; P < 0.01), especially in late stages of the disease (Figure (Figure3,3, C and D, P < 0.05). Consistent with the lower breathing and heart rates, the percentage of saturation of arterial blood in late-stage KO mice was often less than 99%, which was not observed in control mice (~95% vs. ~99%, KO vs. control, P < 0.05; Figure Figure3,3, E and F).

Figure 3
Reduced breathing, heart rate, and oxygen saturation in KO mice.

Abnormal responses of the pre-Bötzinger complex in KO mice.

The pre-Bötzinger complex (preBötC) in the ventral medulla is critical for respiratory rhythm generation (25, 26) and may play a role in the hypoxic response (27, 28). Extracellular recordings of brain stem slices containing the preBötC were obtained from P8–P10 KO mice and their control littermates. Under control conditions (95% O2, 5% CO2), these slices revealed no significant differences in frequency and regularity of bursting activity. In response to hypoxia (95% N2, 5% CO2), the isolated preBötC generates an initial augmentation phase characterized by increased bursting frequency followed by a depression during which bursting frequency returns to, or falls below, baseline activity. During this response, the inspiratory burst discharge switches from “fictive eupnea” to “fictive gasping” (29). The initial augmentation phase in slices from KO mice did not differ from that of control littermates (Figure (Figure4, A–F),4, A–F), but during depression, the amplitude of fictive gasping was significantly decreased in KO mice compared with controls (Figure (Figure4,4, A–F). The frequency of fictive gasping was not statistically different between control and KO mice, but while 100% of slices from control mice continued fictive gasping throughout the 10 minutes of hypoxia, 30% of slices from KO mice stopped fictive gasping.

Figure 4
Abnormal extra- and intracellular recordings of PreBötC of KO mice.

Extracellularly recorded population activity does not provide insight into how the amplitude was determined. Hence, we characterized the hypoxic response using intracellular recordings of preBötC inspiratory neurons in slices from KO and control mice. The cellular firing in phase with the extracellular burst was measured, and the number and frequency of action potentials per burst (APs/burst) was quantified. Under control conditions, the resting potential was identical between control and KO mice; however, the depolarization in phase with the network burst was significantly reduced in KO mice (5.51 ± 0.59 mV, n = 7) compared with controls (10.13 ± 1.30 mV, n = 5, p<0.01, Figure Figure4,4, G–I). AP/burst and firing frequency of KO mice were significantly lower than in control littermates (Figure (Figure4,4, B and D). Upon transition from control to hypoxic conditions, the changes in resting potential in control and KO mice were similar. However, KO mice had a severe reduction of the underlying depolarization when challenged by hypoxia (from 5.51 ± 0.59 to 0.52 ± 1.36 mV; n = 7, P < 0.01), while control mice did not show a significant reduction (10.13 ± 1.30 to 6.09 ± 6.43 mV, Figure Figure4, G–I).4, G–I). The AP/burst of KO mice dropped dramatically, and 2 out of 7 of the slices stopped gasping after more than 5 minutes of hypoxia, while in control slices, a relatively mild reduction of AP/burst was observed, and all of the control slices maintained gasping (Figure (Figure4,4, C and E). Interestingly, the lack of gasping observed in KO slices in hypoxic conditions was restored after bath application of tolbutamide, an ATP-sensitive potassium channel (KATP) inhibitor (Supplemental Figure 1), suggesting an intrinsic deficit in the physiology of preBötC neurons, which may contribute to the breathing alterations in KO mice.

Although respiratory impairment is one of the clinical signs of KO mice, microglial activation was rarely observed in any of the classical respiratory centers, such as the medial parabrachial nucleus, nucleus of the solitary tract, or preBötC. However, in late-stage KO mice, microglial activation was observed around serotonergic cell bodies in the medullary raphe (raphe pallidus and obscurus), a brain region important for respiratory control (30). In some cases, microglial activation extended to their projections, accompanied by mild microgliosis in the preBötC that was identified by neurokinin 1 receptor immunolabeling (Supplemental Figure 2, A–D), suggesting that the alterations in these neurons was not sufficient to elicit a severe secondary inflammatory response. No degenerative changes were detected in the chemoreceptive Phox2B-immunoreactive neurons of the retrotrapezoid nucleus (31, 32).

Selective inactivation of Ndusf4 in the VN induces neurodegeneration and breathing abnormalities and increases mortality.

The preBötC is essential for breathing in vivo (25), and it is influenced by a large number of neural inputs including those from the VN (see Discussion). Because the VN is a prominent site of gliosis and neurodegeneration in KO mice, we selectively inactivated the Ndufs4 gene only in that nucleus by bilaterally injecting adult Ndufs4lox/lox mice with adenoassociated virus (type 1) expressing Cre-GFP (AAV1-Cre-GFP) to generate AAV-VN–KO mice. As a control, Ndufs4lox/lox mice were injected with an AAV1 encoding a nonfunctional Cre (AAV1-CreΔ-GFP) to generate AAV-VN–CT mice. Extensive GFP expression was observed within the VN after bilateral viral transduction (Figure (Figure5A). Furthermore,5A). Furthermore, AAV-VN–KO mice developed extensive microglial activation 1 month after surgery, assessed by staining of the Iba1 marker (Figure (Figure5A).5A). Iba1 staining was dependent upon loss of Ndufs4 expression because no remarkable microglial activation was observed in the VN of AAV-VN–CT mice (Figure (Figure5A).5A).

Figure 5
Histopathological and behavioral alterations after Ndufs4 inactivation in the VN.

Inactivation of Ndufs4 bilaterally within the VN led to weight loss (Figure (Figure5C),5C), motor coordination deficits as assessed by rotarod testing (Figure (Figure5D),5D), and increased mortality (Figure (Figure5B).5B). As the behavior of the mice deteriorated, we observed occasional gasping by the AAV-VN–KO mice. Plethysmography revealed that they had a normal response to hypoxia (5 minutes with 10% O2) (Figure (Figure5E),5E), but a blunted hypercapnic (5 minutes with 5% CO2) ventilatory response (Figure (Figure5F).5F). Moreover, AAV-VN–KO mice had more irregular breathing (IS = 21.2 ± 2.30 AAV-VN–CT mice, n = 14 vs. IS = 36.6 ± 6.10 AAV-VN–KO mice, n = 7; P < 0.05). Injection of the AAV1-Cre-GFP into the VN of conditional tdTomato reporter (line Ai14) mice (33) did not produce any of the symptoms observed when the virus was injected into Ndufs4lox/lox mice (not shown). Analysis of the Cre-induced tdTomato fluorescence from the reporter gene confirmed that transductions of cells was restricted to the VN and that this nucleus sends projections to the ventral medulla in the vicinity of the preBötC (Supplemental Figure 3) as described before (34).

Viral restoration of Ndufs4 in the VN attenuates respiratory abnormalities and ameliorates the fatal phenotype of KO mice.

Because loss of Ndufs4 function in the VN contributes to the motor phenotype and breathing abnormalities of KO mice, we asked whether reexpression of Ndufs4 in the VN was sufficient to ameliorate disease progression in KO mice. An AAV1 construct encoding Ndufs4-IRES-GFP was delivered bilaterally into the VN of KO mice at P21 as a viral rescue strategy (referred to as AAV-VN-VR mice). At P21, the mice were small (<15 g), presymptomatic (22, 23), and more sensitive to anesthesia, making viral injections challenging. Correct targeting was confirmed by extensive GFP expression within the VN (Figure (Figure6A).6A). In accordance with our previous work (23), histopathological analysis of the VN of noninjected mice showed severe microglial activation and tissue lesions (Figure (Figure6B)6B) that were markedly reduced in the injected mice (Figure (Figure6C),6C), suggesting that the cell death observed in the VN of noninjected KO mice is due to the lack of Ndufs4 in that nucleus. The viral rescue delayed clinical progression of the disease (Figure (Figure6F,6F, P < 0.05) and significantly increased the life span of AAV-VN-VR mice compared with KO mice (Figure (Figure6G;6G; median life span: 53 days for KO vs. 69 days for AAV-VN-VR; P < 0.01). Interestingly, the longer-lived AAV-VN-VR mice, which had reduced gliosis in the VN, developed lesions in the striatum (Figure (Figure6,6, D and E). Striatal lesions are common in people with LS and other mitochondrial diseases, but had not been seen before in late-stage (P50) KO mice (23), suggesting that the prolonged life span observed in the virally rescued mice reveals other brain regions where gliosis develops more slowly.

Figure 6
Ndufs4 reexpression in the VN of KO mice improves breathing and ameliorates disease progression.

To ascertain whether improved respiratory response may account for the reduced mortality in the AAV-VN-VR mice, we measured the response of late-stage virally rescued KO mice and controls (control mice injected with AAV-CreΔ-GFP) by plethysmography. AAV-VN-VR mice showed a breathing response to hypoxia comparable to that of control mice during the early (third minute after of hypoxia) phase of the response. However, this was lost at later time points, with the AAV-VN-VR mice showing a response parallel to that of KO mice (Figure (Figure6H6H and Supplemental Figure 4, A and B). Restoring expression of Ndufs4 in the VN also normalized the hypercapnic ventilatory response of the AAV-VN-VR mice compared with virally injected control mice, in contrast with that of hyperresponding or nonresponding KO mice (Figure (Figure6I6I and Supplemental Figure 4, C and D). Furthermore, the breathing of the AAV-VN-VR mice recovered its regularity (IS = 21.2 ± 2.30 for control mice, n = 14; IS = 25.7 ± 4.43, for AAV-VN-VR, n = 3). These results show that restoring Ndufs4 function to the VN is sufficient to partially correct the early breathing deficits in KO mice and ameliorate the fatal disease progression of KO mice.


A primary focus of the present study was to elucidate the probable cause of death of KO mice. We started with knowledge of the brain regions that showed the most gliosis and neurodegeneration, as revealed by histopathology and MRI, but the observation of gasping behavior of KO mice provided the first indication of abnormal breathing behaviors. We noted previously (23) that KO mice resemble humans with LS with regard to a large range of phenotypes and we now extend that to breathing. Respiratory abnormalities affect many LS patients (8, 9, 35, 36) and virtually all patients with mutations in the NDUFS4 gene (1621, 37); however, the link between mitochondrial dysfunction and breathing could not be investigated without an animal model.

We propose that lesions within the VN and FN as well as compromised preBötC function in KO mice result in dysregulation of the central respiratory network and ultimately respiratory failure. Breathing rates determined by optical spectrometry were variable, but older KO mice displayed a reduced breathing rate, especially under stress, along with lower heart rates and incomplete oxygenation of arterial blood compared with control mice. Both neonate and adult KO mice had higher ventilation and higher VT compared with control mice, as measured by plethysmography, which may be a compensatory response. Patients with LS also display hyperventilation and hypocapnia, resulting in respiratory alkalosis (38). Breathing by KO mice became more irregular and was interrupted by frequent apneas as they grew older. Apneas were a common response to handling. KO mice had abnormal responses when exposed to low levels of O2 or high levels of CO2. Although changes in oxygen and pH are thought to be primarily detected in the arterial blood by the carotid bodies (39), the CNS is also sensitive to changes in central levels of O2 and CO2 (27, 31, 40, 41). In the absence of carotid bodies, hypoxia still triggers a ventilatory response (42). Furthermore, mice lacking Ndufs4 function only in the CNS have identical breathing defects; therefore, central rather than peripheral mechanisms are primarily involved. Indeed, brain stem slices containing the preBötC exhibited severe abnormalities in inspiratory bursting activity. Under normoxic conditions, inspiratory neurons of KO mice generated fewer APs per burst, which was associated with a lower firing frequency rate compared with that of control mice. These results suggest that the increased VT and VE in the intact animal is a compensatory mechanism to a decreased central respiratory drive. When challenged with a 10-minute exposure to hypoxia, the amplitude of fictive gasping in KO mice was reduced compared with that in controls, although the initial augmentation phase was identical. Hence, the central respiratory network initially compensates for decreased levels of O2, but fails when decreased levels are maintained for a long time, which may explain why KO mice generate more apneas with increasing age. Increased apneas and blunted ventilatory responses to hypoxia and hypercapnia may cause fatal respiratory arrest, as suggested for other pathologies (43, 44). In agreement with our results, all described NDUFS4-LS patients presented apneic episodes and died of cardiorespiratory failure (21). KO mice, however, also presented altered heart rate, especially at older ages, which could contribute to the death of the animals. However, the neural origin of KO pathology has been established previously, and deletion of Ndufs4 in cardiomyocytes and skeletal muscle do not cause any overt clinical phenotype in mice (45), ruling out a primary cardiac defect. Although deficits in the peripheral nervous system inputs to the heart or heart conductivity were not tested in our model, they have not been consistently reported in LS patients (7, 21).

ATP is involved in the maintenance of gasping during the depression phase (46). Furthermore, during hypoxia, ATP-sensitive potassium channels have been reported to be activated in inspiratory neurons of the preBötC (47); therefore, reduced ATP generation may play a major role in this response. Interestingly, mice lacking ATP-sensitive potassium channel 6.2 showed an impaired maintenance of gasping during severe hypoxia (48). We hypothesize that KO mice produce less ATP in energy-demanding cells because of complex I dysfunction. Therefore, during hypoxia, when the ability to produce ATP is compromised, the ATP levels of cells in KO mice may drop dramatically compared with those in control mice, leading to an impaired gasping response which may lead to opening of KATP channels. Accordingly, bath application of a KATP channel antagonist restored fictive gasping during hypoxic events in PreBötC slices of KO mice. Further work is warranted to confirm this hypothesis.

Although our results indicate that intrinsic properties of preBötC are compromised in KO mice, the mild gliosis within this complex suggests that regulatory inputs to the preBötC play an important role in respiratory dysfunction and death. The cerebellum, FN, and VN are responsible for maintaining balance as well as modulation of breathing, coordination of breathing and swallowing, and adjustment of breathing to postural changes (49). The importance of the cerebellum and brain stem for regulation of automatic ventilation is also manifest in sleep apneas (5052). These structures also mediate autonomic breathing dysfunction in sudden infant death syndrome and other sleep disorder breathing and cardiovascular syndromes (51, 53). Electrical stimulation of VN neurons modulates firing properties of neurons in the preBötC (34, 54). Consequently, we hypothesize that the gradual demise of the VN network contributes to both the ataxia and respiratory abnormalities observed in KO mice.

Inactivation of Ndufs4 selectively in the VN leads to abnormal control of breathing, and viral restoration of Ndufs4 expression in the VN ameliorates the breathing deficits and mortality of KO mice. Thus, Ndufs4 function in the VN is critical for maintenance of normal balance and ventilation in response to hypercapnia. KO mice with Ndufs4 restored only in the VN probably still have defects in other regulatory inputs to the preBötC as well as the preBötC itself. Furthermore, our viral injections were in the medial and lateral parts of the VN because they show the most gliosis (23); however, other VN subdivisions may also be involved in breathing (55). Other neighboring structures in the dorsal medulla or axons coursing through this area may be affected by inflammation and edema. For example, the nucleus tractus solitarius is involved in breathing regulation (56), and it (along with the VN) projects to the parabrachial nucleus. Lesions of the parabrachial nucleus promote motion sickness, nausea, and anorexia, which are common conditions associated with breathing irregularities and are often observed in LS patients (7).

In summary, our studies validate the usefulness of KO mice as a model for studying the physiological consequences of mitochondrial dysfunction in the brain and underscore the importance of the VN in disease progression.



Mice were maintained with rodent diet (5053; PicoLab) and water available ad libitum in a vivarium with a 12-hour light/12-hour dark cycle at 22°C. The Ndufs4-KO and Ndufs4lox/lox mice were bred as described (22) and backcrossed onto a C57BL/6 background for more than 10 generations. The NesKO mice were generated by breeding Ndufs4lox/lox mice with B6.Cg(SJL)-Tg(Nes-cre)1Kln/J (Nestin-Cre) mice obtained from Jackson Laboratory. Because KO and NesKO mice present an identical encephalopathy progression (23), they are used interchangeably for the studies presented here and referred to as KO mice. The (Gt)ROSA26Sor-floxed stop-tdTomato (Ai14) line (33) was obtained from the Allen Institute for Brain Science (Seattle, Washington, USA).

Clinical scoring.

Disease progression was evaluated as described (23). Briefly, physiological (body weight, body temperature, breathing pattern) and behavioral (locomotor activity, motor coordination, gait/postural alterations) parameters were evaluated as follows: cumulative scores of 0–1, presymptomatic stage; 2–4, early stage; 5–8, middle stage; 9–12, late stage.

AAV-based vector generation and delivery.

AAV-CRE-GFP and AAV-CREΔ-GFP have been described elsewhere (57, 58). An AAV-Ndufs4-IRES-GFP vector was generated by cloning the mouse Ndufs4 gene in an IRES-GFP containing plasmid under the control of the CMV-chicken β-actin (CBA) promoter. Viruses were prepared in HEK293 cells with AAV1 coat serotype, purfied by sucrose and CsCI gradient centrifugation steps, and then resuspended in HBSS at a titer of 2 × 109 viral genomes/μl. For viral delivery, 1 μl of the virus was stereotaxically injected in the mediolateral VN at the coordinates (mediolateral [ML] = ± 1.25, anterioposterior [AP] = –6.00, dorsoventral [DV] = –3.90) from the bregma. Viruses were injected bilaterally and animals recovered for 2 weeks before behavioral testing.


Mice were anesthetized with 1.5% isoflurane and maintained at 37°C during the experiment with forced warmed air and on a heating pad. During the MRI session, the mouse was mounted in a coil such that the signal was focused on the head region. The mouse was held in position with several pieces of adhesive tape. Approximate parameters used were as follows: spin echo–type parameters 3000/40 ms cycle delay/echo time, 2-average, 12-minute acquisition time. After imaging, the mice were monitored to assure full recovery before returning to the cage.

Pulsimetry and oximetry by optical spectroscopy.

The hair in the neck region of mice was removed with Nair depilatory cream using a 5-minute application; cream was then thoroughly removed with moist paper towel. At least 24 hours later, oxygen saturation, breathing rate, and heart rate were measured using the MouseOx (Starr Life Sciences) optical spectroscopy apparatus and software. After 5 minutes of acclimatization to being restrained by hand, a collar clip was placed around the neck of the mouse. Recordings were made for 10 to 20 minutes. During recording, slight movements or renewal of struggling often caused loss of signal or error in one or more parameters. Only time periods containing a completely error-free signal for each measured parameter were used for analyses. For each mouse, at least 6 different time points lasting at least 6 seconds were collected for a total of at least 1 minute of data, which were later used for statistical analyses.

Whole-body plethysmography.

Ventilatory function was assessed by whole-body plethysmography under unrestrained conditions (Buxco Research System). Briefly, normoxic/normocapnic air was replaced by hypercapnic air (CO2 5%), or hypoxic air (O2 10%) for 5 minutes. We measured the fR (in cycle per min, c.min–1), the VT (μl) normalized as the ratio VT divided by body weight (VT μl.g–1), the VE (ml.g–1.min–1), the number of apneas per minute greater than 2 normal respiratory cycles (apneas > 2TTOT) expressed as the apnea index (AI), and the IS (variability in duration of respiratory cycles during 5 successive periods) (59). Measurements were performed during (a) control period under air, prior to the challenge, (b) the third minute of the challenge, (c) the fifth minute of the challenge, (d) the postchallenge period (the first 2 minutes after the end of the challenge when normoxia or normocapnia was restored in the plethysmographic chamber), and (e) 10 to 15 minutes later. The inactivation and rescue experiments were analyzed simultaneously; therefore, the same controls (AAV-VN–CT) were used and the values are shown in both graphs. Further details are in Supplemental Methods.


All experiments used transverse, rhythmic 600- to 650-μm–thick medullary brain slices obtained from 8- to 12-day-old NesKO, KO, and control mice. Mice were deeply anesthetized with isoflurane (delivered by inhalation) and quickly decapitated at the C3/C4 spinal level (59). Extracellular recordings were obtained with glass suction electrodes positioned on the slice surface in the ventral respiratory group (VRG) near or on top of the preBötC. Intracellular patch-clamp recordings were obtained with a MultiClamp 700B Amplifier (Molecular Devices), using blind-patch technique to VRG neurons in 600- to 650-μm brain stem slice preparations. Further details are in Supplemental Methods.


Histology was performed as described (23). Briefly, mice were anesthetized with an overdose of pentobarbital perfused with PBS followed by 4% PFA. Further details are in Supplemental Methods.


Data are shown as the mean ± SEM. GraphPad Prism v5.0 software was used for statistical analyses. Appropriate tests were selected depending on the experimental design as stated in the text. Statistical significance, when reached (P < 0.05 was considered significant), is stated in the text or figure legends.

Study approval.

All animal experiments were approved by the Animal Care and Use Committee at the University of Washington.

Supplementary Material

Supplemental data:
Supplemental video 1:


This work was supported by a grant from the NW Mitochondrial Guild (to R.D. Palmiter). A. Quintana was a recipient of a Ministerio de Ciencia e Innovación (Spain) (MICINN) Postdoctoral Mobility Program fellowship. The authors thank Jennifer Stone, Raj Kapur, and Elisenda Sanz for their help in this research and Glenda Froelick for assistance with histology.


Conflict of interest: The authors have declared that no conflict of interest exists.

Citation for this article: J Clin Invest. 2012;122(7):2359–2368. doi:10.1172/JCI62923.


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