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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptHHS Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
J Neurosci. Author manuscript; available in PMC 2012 November 16.
Published in final edited form as:
PMCID: PMC3362630

Brain-Derived Neurotrophic Factor (BDNF) Val66Met Polymorphism Affects Resting Regional Cerebral Blood Flow and Functional Connectivity Differentially in Women versus Men


The human Val66Met single nucleotide polymorphism in the BDNF gene impacts BDNF signaling at the cellular level. At the neural systems level, it is associated with differences in prefrontal (PFC) and hippocampal function during performance of cognitive and affective tasks. Because the impact of this variant on basal prefrontal and hippocampal activity is not known but may be relevant to understanding this gene’s function in health and disease, we studied 94 healthy individuals with H215O PET to assess regional cerebral blood flow (rCBF) during rest and tested for between-genotype differences. Because BDNF and gonadal steroid hormones conjointly influence neuronal growth, survival, and plasticity in hippocampus and PFC, we also tested for sex-by-genotype interactions. Finally, in light of BDNF’s known impact on plasticity and dendritic arborization, we complimented direct rCBF comparisons with connectivity analyses to determine how activity in hippocampal and prefrontal regions showing between genotype group differences covaries with rCBF in other nodes throughout the brain in a genotype- or sex-dependent fashion. Compared to Val homozygotes, Met carriers had higher rCBF in prefrontal (BA25 extending into BA10) and hippocampal/parahippocampal regions. Moreover, there were significant sex-by-genotype interactions in regions (including frontal, parahippocampal, and lateral temporal cortex) in which Val homozygotes showed higher rCBF in females than males, but Met carriers showed the opposite relationship. Functional connectivity analysis demonstrated that correlations of BA25, hippocampus, and parahippocampus with frontal and temporal networks were positive for Val homozygotes and negative for Met carriers. In addition, sex-by-genotype analysis of functional connectivity revealed that genotype affected directionality of the interregional correlations differentially in men versus women. Our data indicate that BDNF allelic variation and sex interactively affect basal prefrontal and hippocampal function.

Keywords: BDNF, default network, sex, depression, PET, genetics


Brain-derived neurotrophic factor (BDNF), the most abundant neurotrophin in the human central nervous system, is robustly expressed in the hippocampus (Conner et al. 1997) and cortical regions, including prefrontal cortex (PFC) (Hofer et al. 1990; Huntley et al. 1992; Pezawas et al. 2004; Weickert et al. 2005) and is important in regulating synaptic plasticity as well as neuronal survival, migration, differentiation, and dendritic growth (Huang and Reichardt 2001). In rodents, inhibition of BDNF signaling impairs spatial learning and memory (Linnarsson et al. 1997; Mizuno et al. 2000). Because of its critical involvement in brain regions and cognitive operations important for higher-order human function and because of its role in the mesolimbic dopamine circuit (Berton et al. 2006), BDNF is of interest in the pathogenesis of a number of psychiatric disorders and may have implications for their treatment.

A human functional single nucleotide polymorphism (SNP) with a valine (Val) substituted by a methionine (Met) at codon 66 (rs6265) in the 5′pro-region of the BDNF gene on chromosome 11p13 is observed with a population frequency of 20–30% in Caucasians (Shimizu et al. 2004). This SNP affects intracellular processing and activity-dependent modulation of BDNF (Egan et al. 2003, Chen et al. 2004) which, in turn, influences long-term changes in hippocampal synapses (Lu 2003). The BDNF Met allele is associated with poorer episodic memory (Hariri et al. 2003), abnormal cognition- and affect-related hippocampal activation, and reduced levels of hippocampal n-acetyl aspartate, an intracellular marker of neuronal integrity (Egan et al. 2003). The Val66Met polymorphism has also been associated with susceptibility to neuropsychiatric disorders, particularly schizophrenia (Neves-Pereira et al. 2005), Alzheimer’s disease (Ventriglia et al. 2002), bipolar disorder (Sklar et al. 2002), anxiety (Soliman et al. 2010), and depression (Gatt et al. 2009), all of which have sexually dimorphic expression of disease onset, severity, and/or course (WHO, 2008).

Sex-specificity in illnesses where BDNF may play a role could occur because of common effects of ovarian steroids and BDNF on molecular and neural systems (Miranda et al. 1993; Murphy et al. 1998). Estrogen and BDNF activate similar signal transduction pathways through estrogen receptors and trkB, respectively (Scharfman et al. 2006), and conjointly influence neural growth, survival, and plasticity in hippocampus and PFC (Henderson et al. 1996; Benraiss et al. 2001). Additionally, the BDNF gene contains a functional estrogen-response element, and estrogen-ligand complexes can bind this sequence, inducing BDNF expression (Sohrabji et al. 1995). Because of these BDNF and gonadal hormone interactions, we hypothesized that the val66met polymorphism would affect brain function and circuit-level activity differently in men and women.

To elucidate the effect of this SNP, and its interaction with sex, on basal brain function, we used the oxygen-15 water positron emission tomography (PET) technique, a gold-standard method for measuring resting regional cerebral blood flow (rCBF), an indicator of local cerebral metabolism and a parameter that is as yet unstudied in this context. We assessed so-called resting rCBF as a function of BDNF genotype in men versus women, with particular focus on hippocampal/parahippocampal and prefrontal BDNF-rich brain regions. In addition, because BDNF mediates synaptic plasticity (Ninan et al. 2010; Yang et al. 2009) and dendritic arborization (Ji et al.2009; Tyler and Pozzo-Miller 2003), we hypothesized that functional interactions between BDNF-rich regions and other parts of the brain would vary with BDNF genotype and sex.



Ninety-four healthy, right-handed Caucasians, aged 18 to 50, were recruited and screened with the Structured Clinical Interview for DSM-IV Axis I Disorders and DSM-IV Axis II Disorders Research Version (SCID-II; First MB et al., 1996) to ensure that they were free of confounding past or present psychiatric illness. In addition, board certified physicians, including radiologists, assessed each subject with physical examination, medical history review, a battery of laboratory tests, and a structural MRI scan to rule out significant medical illness, substance abuse, centrally active medications, or neurostructural abnormalities. Study procedures were approved by the National Institutes of Health Institutional Review Board and Radiation Safety Committee, and all participants provided written informed consent.

Each of the 94 participants underwent two resting PET scans and was genotyped. There were 66 Val homozygotes (mean age=31.1±[S.D.]8.5) consisting of 33 males and 33 females (aged 30.1±8.1 and 30.0±8.8, respectively), as well as 28 Met carriers (mean age = 32.1±9.1), consisting of 14 males and 14 females (aged 31.1±8.6 and 33.0±9.8).

BDNF Val66Met Genotyping

Blood was collected from all subjects and DNA was extracted using standard methods. BDNF genotyping and allelic discrimination were determined by TaqMan 5′ exonuclease assay using a custom-designed assay (Applied Biosystems, Foster City, CA). BDNF genotype frequencies were in Hardy-Weinberg equilibrium (X2=0.09). To examine occult genetic stratification, a common functional polymorphism in COMT Val158Met was genotyped, and no significant variation in allele frequency was found.

PET Data Acquisition

Subjects were instructed to refrain from alcohol, nicotine, and caffeine for four hours prior to the scan, and were told not to ingest over-the-counter medications that could affect rCBF for the preceding 24 hours. On the day of the study, participants were instructed to lie still in the scanner and rest with their eyes closed. An intravenous bolus of 10 mCi of oxygen-15 water was administered prior to each of two 60-second scans performed six minutes apart. PET data were collected with a GE Advance (Milwaukee) three-dimensional PET scanner (septa retracted, 4.25 mm slice separation, 35 slices, axial field of view 15.3 cm). Scans were corrected for attenuation and were reconstructed into 32 axial planes (6.5 mm full width at half maximum [FWHM]).

PET Data Analysis


The reconstructed PET data were processed and analyzed with SPM5 (Wellcome Department of Cognitive Neurology, Images were co-registered, corrected for background activity, anatomically normalized to an average template, scaled proportionally to remove variations in global blood flow, and smoothed using a 10mm Gaussian kernel. After preprocessing, the two resting rCBF scans of each subject were averaged and entered into group-level analyses.

rCBF analyses

To test for rCBF differences between genotype groups across the entire brain, a voxelwise random effects analysis was performed. In light of our á priori, region-specific hypotheses, small volume correction (SVC) for family-wise error (FWE) was additionally applied to results within the hippocampal/parahippocampal complex and the prefrontal cortex (PFC); anatomical regions of interest were created with the Wake Forest Pick-Atlas tool in SPM for left and right hippocampi, parahippocampal gyri, and PFC (composed of BA9, BA10, BA11, BA25, and BA46, combined). To test for male-female differences in the effect of the Val66Met polymorphism on resting rCBF, a voxelwise sex-by-genotype interaction analysis was performed.

Functional connectivity analyses

To test for between-genotype differences in functional connectivity, rCBF was extracted from spheres with 5mm radii drawn around seed voxels within regions of interest hypothesized á priori (hippocampus/parahippocampal gyrus and PFC) that best distinguished the Val homozygotes from the Met carriers as delineated by the between-genotype analysis (shown in Table 1). First, to determine a search area for the between-genotype and the sex-by-genotype correlational analyses, rCBF from these spheres was entered into a series of voxelwise regression analyses that were run on the entire cohort, regardless of sex or genotype. Next, the rCBF values for each of these spheres were entered into voxelwise regression analyses for each genotype group separately to determine group specific correlational patterns within the search area. Finally, between-genotype analyses were carried out on the resulting correlational maps for each seed region.

Table 1
Regions showing increased rCBF for BDNF Met carriers compared to Val homozygotes. No regions showed the opposite effect.

To test for sex-by-genotype effects on functional connectivity, we used the same search areas as defined above: connectivity maps for the hippocampus/parahippocampal gyrus and PFC seed regions that best distinguished rCBF in the Val homozygotes from rCBF in the Met carriers for the entire group, regardless of genotype or sex. Within these whole-group connectivity maps, sex-by-genotype interaction analyses were carried out on the correlational data.

Results significant at the p<0.001 level with cluster size greater than 10 voxels are reported. Peak voxel p-values are given, with FWE correction for multiple comparisons indicated when SVC was applied.


BDNF Genotype and rCBF

Whole-brain voxel-wise analysis examining the main effect of genotype revealed no regions in which rCBF of Val homozygotes exceeded that of Met carriers. In contrast, compared to Val homozygotes, Met carriers demonstrated increased resting rCBF in regions hypothesized á priori (Figure 1), specifically in ventromedial PFC (BA25 extending into BA10; p=0.00006, uncorrected; p=0.05, SVC for FWE), left parahippocampal gyrus (p=0.0003, uncorrected; p=0.05, SVC for FWE), and right hippocampus (p=0.0007, uncorrected). Met carriers also showed greater rCBF in the left insula and right lateral temporal regions not hypothesized. Details of these findings are reported in Table 1.

BDNF Allelic Variation Affects rCBF

Sex and rCBF

Whole-brain voxel-wise analysis examining the main effect of sex in this cohort revealed an extensive group of regions in which resting rCBF was higher in women than in men. These included regions hypothesized á priori (medial PFC/BA10 [p≤0.002, FDR corrected], right hippocampus [p=0.0001, FDR corrected], and bilateral parahippocampal gyri [p≤0.002, FDR corrected]. There were no regions in which rCBF for men were greater than women in either genotype group. Details of these findings are reported in Table 2, and representative data are shown in Figure 2.

Sex Differences in rCBF
Table 2
Locales within regions hypothesized á priori (PFC and medial temporal cortex) in which resting rCBF was higher in women than in men.a No regions showed the opposite effect.

Sex-by-Genotype Interactions on rCBF

Whole-brain voxel-wise analysis evaluating the relationship between BDNF genotype and sex revealed interactions in several brain regions as detailed in Table2. Specifically, genotype effects differed in men versus women in the right parahippocampal gyrus (p=0.0006, uncorrected) and the right dorsolateral PFC (DLPFC, BA9, p=0.0009, uncorrected), as well as in the right caudate (p=0.0003, uncorrected), left fusiform gyrus (BA37, p=0.0005, uncorrected), and left inferior temporal gyrus (BA20, p=0.0009, uncorrected). For all of these regions, rCBF was higher in females than males for the Val homozygotes, whereas the opposite relationship was seen for Met carriers. This consistent pattern is demonstrated in Figure 2 for right parahippocampal gyrus. Conversely, this pattern was reversed in only a single locus in the left precuneus, where rCBF was higher in males compared to females for Val homozygotes and the opposite was seen for Met carriers (BA7, p=0.0001, uncorrected).

BDNF Genotype and Functional Connectivity

Three separate between-genotype analyses of functional connectivity were carried out using seed regions from (1) left BA 25 in the PFC, (2) right hippocampus, and (3) left parahippocampus as defined by the between-genotypes analysis shown in Table 1. Detailed results of these analyses are given in table 3. Between-genotype differences in inter-regional correlations of these three regions showed a predominant pattern such that the correlations were positive in Val homozygotes, but robustly negative in Met carriers. This predominant pattern is demonstrated in Figure 3 for the relationship between the BA 25 seed region and inferomedial BA 11. Findings in the opposite direction (inter-regional functional connectivity positive in Met carriers, but negative in Val homozygotes) were sparse (Table 3).

BDNF Genotype x Sex Interaction Affects rCBF
Table 3
Regions showing significant interaction between BDNF allelic variations and sex differences on rCBF.

Sex-by-Genotype Interactions on Functional Connectivity

To investigate sex-by-genotype interactions on functional connectivity, we used the same approach as in the genotype analysis of functional connectivity mentioned above: connectivity maps for three seed regions from left BA 25, right hippocampus, and left parahippocampus as defined in Table 1 were derived for the entire group regardless of genotype or sex, and these three connectivity maps were used as search areas for our analysis of sex-by-genotype effects on functional connectivity. A consistent pattern of interactions was seen for functional connectivity with all three seed regions such that for Val homozygotes, interregional correlations were more robustly positive for females than males, whereas for Met carriers, this pattern was reversed in that correlations for males were more robustly positive than for females. An example of this pattern is shown in Figure 4 for the relationship between the left parahippocampal seed region and the right parahippocampal gyrus. No interactions in the opposite directions were observed. Complete details are given in Table 4.

BDNF Allelic Variation Affects rCBF Functional Connectivity
Table 4
Regions showing differential functional connectivity of rCBF for BDNF Val homozygotes and Met carriers.


BDNF is a key regulator of long-term potentiation and promotes synaptic plasticity and efficacy via excitatory glutamatergic neurotransmission in the hippocampus (Messaoudi et al. 1998; Drake et al. 1999; Tartaglia et al. 2001; Bramham et al. 2005). The BDNF Val66Met polymorphism attenuates activity-dependent but not constitutive BDNF signaling in cultured hippocampal neurons (Egan et al. 2003; Lu 2003) and has been linked to both hippocampal and prefrontal abnormalities by functional neuroimaging. Previous fMRI experiments, whose measurements inherently depend on computing differences between two brain states and thus provide only relative measures of activation over baseline (Deyoe et al. 1994), have shown abnormal hippocampal recruitment during memory-related tasks compared to control tasks (Egan et al. 2003; Hariri et al. 2003; Hashimoto et al. 2008). Other fMRI studies have also found activation differences in medial PFC dependent on BDNF genotype where Met carriers showed reduced ventral mPFC activity during memory extinction (Soliman et al. 2010). However, it has remained unclear until the present work whether this polymorphism has implications for the cerebral metabolic landscape during the so-called basal or resting state. We used a gold-standard PET method that allows task-independent brain function, specifically rCBF, a parameter tightly coupled to cerebral glucose metabolic rate, to be measured and mapped without reference to any other brain state.

Our data demonstrate that even at rest, rCBF in bilateral hippocampal/parahippocampal and medial frontal regions of healthy individuals is affected by the BDNF Val66Met polymorphism. In addition to providing an important perspective on fMRI activation studies, these data suggest that there exists a potent, genetically mediated bias in the basal activity of frontotemporal circuitry. Because BDNF generally facilitates neural activity in hippocampus and cortex (Henderson 1996; Benraiss et al. 2001), this bias in Met carriers – increased regional activity at baseline – could reflect a neural systems level accommodation for the relatively inefficient, activity-dependent BDNF signaling associated with Met alleles at the cellular level (Egan et al. 2003). Whether this is additionally related to previously reported compensatory increases in peripheral serum concentration of BDNF in healthy Met carriers (Lang et al. 2009) is unclear, and given BDNF’s broad impact on neuronal development, activity, and plasticity, delineating the precise roots of such speculated accommodation necessarily requires further research. Nonetheless, it is remarkable that even subtle differences in this molecule result in measurable neurofunctional alterations, particularly in key components of the default resting state network (Raichle, MacLeod et al. 2001), in a cognitively and affectively unchallenged state.

Our finding of increased resting rCBF in women compared to men is consistent with several previous studies (Devous et al. 1986; Yoshii et al, 1988; Slosman et al. 2001) and has been hypothesized to reflect physiologic compensation for the smaller brain size found in women (Ho et al. 1980a,b; Ankney et al. 1992). The observation that sex effects in several regions within frontotemporal structures are interactively modulated by BDNF allelic variation is in line with a substantial body of animal literature demonstrating parallel and interacting actions of estradiol and BDNF in the brain. Not only do estrogen receptors, BDNF, and trkB show regional coexpression in the hippocampus and frontal cortex (Miranda et al. 1993; Sohrabji et al. 2006), both BDNF and estradiol increase adult neurogenesis (Ormerod et al. 2004; Sairanen et al. 2005), provide neuroprotection (Kiprianova et al. 1999; Shughrueet al. 2003), and facilitate memory formation (Mizuno et al. 2000; Frick et al. 2002). Additionally, BDNF mRNA levels are reduced in ovariectomized female rats and are rescued by estradiol replacement in the hippocampus and cortex (Singh et al. 1995; Sohrabji et al. 1995; Liu et al. 2001). Despite this ample preclinical evidence for sex-by-genotype interaction, there is a paucity of human data demonstrating true statistical interactions between genotype and sex, though several authors have reported genotype effects occurring only in one sex and not the other (Henningsson et al. 2009; van Wingen et al. 2010;). The generally greater magnitude of BDNF genotype effects in men than women in these select regions agrees with studies finding genotype effects on frontotemporal measures selectively in men, including those examining serotonin transporter availability (Henningsson et al. 2009) and activation during memory tasks (van Wingen et al. 2010). However, our findings of reversed sex effects on resting rCBF in Val homozygotes versus Met carriers indicate that the combined effects of sex and BDNF signaling on neurophysiological function are likely to be complex.

Because both BDNF and estradiol play important roles in axonal guidance and dendritic arborization (Dominguez et al. 2004) as well as in synaptogenesis (Tanapat et al. 1999; Scharfman et al. 2005), we postulated that BDNF function, as predicted by genotype, both alone and in conjunction with sex, may modulate the functional connectivity of areas impacted by BDNF genotype. In keeping with this hypothesis, significantly greater positive correlations between rCBF in the BA25and that in mPFC, and between hippocampus and parahippocampus were seen in Val homozygotes compared to Met carriers during rest, consistent with prior documentation of greater resting network connectivity in these areas in Val homozygotic children (Thomason et al. 2009). These findings are complimented by the sex-by-genotype interactions, which demonstrated consistent genotype-determined differences in sexually dimorphic patterns of interregional cooperativity within BA25 and hippocampal/parahippocampal regions. The correlations of rCBF between these regions were modulated differentially by sex, with correlations more robustly positive for Val homozygotic females than males, whereas for met carriers, this pattern was reversed. These results together suggest that when investigating genotypic modulation on neurophysiology, sex difference is an important factor that should be considered in explaining the findings.

Our results are also relevant in considering the neural substrate of neuropsychiatric disorders. For example, the ‘neurotrophin hypothesis’ of depression speculates that incompetent BDNF function is directly related to the pathophysiology of depression. Although previous genetic association studies of BDNF Val66Met polymorphism in depression have generated inconsistent results (Verhagen et al. 2008; Surtees et al. 2007; Chen et al. 2008), our data suggest that several brain regions known to display depression-related abnormalities could also be modulated by the BDNF Val66Met polymorphism. The hippocampus, BA25, and mPFC have been shown to exhibit abnormal depression-related variations, including hyperperfusion in BA25 in chronic/treatment resistant patients (Mayberg 1994; Drevets et al. 1997; Mayberg 2005), hyperactivation of hippocampus to emotional stimuli (Lau et al. 2010), and hyperrecruitment of PFC when down-regulating amygdala responses to negative stimuli (Johnstone et al. 2007). Our finding of increased resting regional cerebral blood flow in these same regions in healthy Met carriers without clinical depression mirrors this systems-level pathological phenotype and suggests that inefficient BDNF protein processing may translate to limbic functional changes that could have importance in illness states. On the other hand, abnormally increased subgenual cingulate and default network functional connectivity observed in depressed patients (Greicius et al. 2007) was manifested differently in Met carriers in our study, suggesting that the confluence of BDNF genotype effects and depression pathophysiology is intricate and requires further investigation.

There are several caveats that warrant mention regarding the present work. First, we were unable to document menstrual cycle phase on all women in the study, which prevents the investigation of the effect of this important variable in our data. Future research including such hormonally-related parameters will provide crucial information. Second, even though our study controlled for age, race, sex and past psychiatric illness, genes interact with many factors including early life stress, hormones, and the environment to influence the underlying neurobiology of the intermediate phenotype. Although our sample size is adequate, these factors could contribute variance to findings in the present study. In addition, resting state by definition implies unrestricted thought process, and variation in the content of the thought process or in the response to the scanning session may be affected by genotype and these effects also may interact with sex and other personality related features. Such experiential variability could be reflected in our rCBF results.

In conclusion, our data identify in healthy individuals BDNF genotype-determined differences in basal resting activity and interregional activity relationships within medial frontotemporal nodes important in neuropsychiatric illnesses such as depression. The fact that sex differences in these measures in these regions are modulated by BDNF genotype serves as an important impetus to further examine BDNF-gonadal hormone interactions on resting network dynamics in both healthy individuals and patients with major depression.

BDNF Genotype-by-Sex Interaction Affects rCBF Functional Connectivity
Table 5
Regions showing interaction between sex and BDNF Val66Met polymorphism on rCBF functional connectivity.


This research was supported by the Intramural Research Program, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, 20892.


All authors report no financial conflict of interest with regard to this manuscript.


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