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Logo of grsbGene Regulation and Systems Biology
 
From:
Published online 2012 May 16. doi: 10.4137/GRSB.S9687

Table 2

Genes significantly impacted by butyrate in the rumen epithelium detected by RNA-seq technology.

Gene_idSymbolGene nameLocus24 h72 h168 hPost 24 hPost 168 h
ENSBTAG00000001100IL22RA1Interleukin 22 receptor, alpha 12:129351697–1293781600.570.37**0.410.830.92
ENSBTAG00000001497MRASMuscle RAS oncogene homolog1:131765942–1318340010.960.760.860.810.64***
ENSBTAG00000002088Uncharacterized protein11:46575177–465849840.51***0.930.970.961.25
ENSBTAG00000002404TMX2Thioredoxin-related transmembrane protein 215:82363843–823725270.870.73**0.82**0.980.95
ENSBTAG00000003192TBC1D16TBC1 domain family, member 1619:53181378–532455480.700.56**0.790.850.71
ENSBTAG00000003585CD47CD47 molecule1:53103995–531690380.77***0.73***0.891.061.21
ENSBTAG00000003948 FPPSFarnesyl pyrophosphate synthase3:15356046–153749371.010.850.881.27**1.46***
ENSBTAG00000004208PLEKHG6Pleckstrin homology domain containing, family G member 65:104415804–1044311280.730.36**0.41*0.720.82
ENSBTAG00000004256ODCOrnithine decarboxylase11:87178097–871825030.740.560.651.292.96**
ENSBTAG00000004322FOSFBJ murine osteosarcoma viral oncogene homolog10:86883738–868871690.800.43**0.550.890.75
ENSBTAG00000004884SLC4A5Solute carrier family 4, member 511:10283281–104039770.570.39**0.480.580.67
ENSBTAG00000004971GRAM domain containing 1C1:58963949–590632560.68***0.68***0.82**1.130.72***
ENSBTAG00000005397CD46Membrane cofactor protein16:77483016–775226650.820.74**0.850.880.81
ENSBTAG00000005466C8orf58Chromosome 8 open reading frame 588:70406943–704120900.740.70**0.840.750.75
ENSBTAG00000005580SZT2Seizure threshold 2 homolog (mouse)3:103160271–1032010600.910.79*0.950.920.92
ENSBTAG00000006464ADP-ribosylation factor-binding protein GGA15:109960752–1099798960.910.70***0.82***0.860.87
ENSBTAG00000006984CD55CD55 molecule, decay accelerating factor for complement16:5105576–51242290.840.68**0.840.951.08
ENSBTAG00000007399LAMP2Lysosomal-associated membrane protein 2X:4846777–48799160.880.78*0.820.830.80
ENSBTAG00000008442NSFN-ethylmaleimide-sensitive factor19:46081985–462285650.740.57**0.730.780.82
ENSBTAG00000008700CRCT1Cysteine-rich C-terminal 13:18222997–182247990.550.40*0.39*0.910.68
ENSBTAG00000009575C6orf170Chromosome 6 open reading frame 1709:30195128–304004350.860.760.750.68*0.69
ENSBTAG00000009995CPEB4Cytoplasmic polyadenylation element binding protein 420:5512160–55845400.750.67*0.790.840.75
ENSBTAG00000010670VSIG8V-set and immunoglobulin domain containing 83:9942946–99504850.580.27***0.34***0.620.72
ENSBTAG00000011482SLC43A2Solute carrier family 43, member 219:23261579–233010080.800.47*0.49**0.620.82
ENSBTAG00000011525SLC5A8Solute carrier family 5 (iodide transporter), member 85:65387536–654538180.32*0.33*0.380.901.49
ENSBTAG00000012280PGLYRP2Peptidoglycan recognition protein 27:8702089–87071561.090.640.822.277.00***
ENSBTAG00000012780LPOLactoperoxidase19:9441748–94714980.37***0.720.761.140.72
ENSBTAG00000013205Interleukin 1 receptor accessory protein1:77198181–773436450.850.64***0.750.871.00
ENSBTAG00000013507SPRR3Small proline-rich protein 33:17796521–177983400.610.46**0.660.891.41
ENSBTAG00000013578Uncharacterized protein3:32269407–322844960.23***0.610.620.880.73
ENSBTAG00000013831DSG1Desmoglein 124:26089488–261334050.640.26***0.21***0.35**0.34**
ENSBTAG00000013999FAM20BFamily with sequence similarity 20, member B16:61810680–618521090.820.68***0.830.900.80
ENSBTAG00000014289ZFYVE9Zinc finger, FYVE domain containing 93:94600423–947131430.790.67*0.750.800.79
ENSBTAG00000014367PRKXProtein kinase, X-linkedX:138715323–1387477770.870.70***0.860.880.87
ENSBTAG00000014945IQSEC2IQ motif and Sec7 domain 2X:96082196–961583170.820.60***0.760.800.83
ENSBTAG00000014984RPRD2Regulation of nuclear pre-mRNA domain containing 23:20254978–203455880.930.800.930.840.72*
ENSBTAG00000015129KLK10Kallikrein-related peptidase 1018:57448224–574541970.580.45*0.36**0.680.35**
ENSBTAG00000015796DNAJC5DnaJ (Hsp40) homolog, subfamily C, member 513:54382946–544085280.850.66***0.780.961.05
ENSBTAG00000015915SBSNSuprabasin18:46358552–463632000.660.24***0.16***0.32*0.40
ENSBTAG00000016121KRT75Keratin 755:27630614–276408490.810.45*0.470.590.77
ENSBTAG00000016208TGM2Transglutaminase 213:67663137–676976071.402.05*2.23*0.941.62
ENSBTAG00000016239DUOXA2Dual oxidase maturation factor 210:65525529–655404820.500.48*0.551.111.22
ENSBTAG00000016242DUOXA1Dual oxidase maturation factor 110:65525529–655404820.500.48*0.551.111.22
ENSBTAG00000016864LBPLipopolysaccharide binding protein13:67874473–679100950.47*0.540.630.860.92
ENSBTAG00000016968CHST4Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 418:39665072–396718840.38*0.39*0.550.940.71
ENSBTAG00000018252ARRDC4Arrestin domain containing 421:8924762–89390280.49*0.46**0.41**0.960.87
ENSBTAG00000018937Heme oxygenase (decycling) 225:3621446–36495960.880.72***0.81*0.900.94
ENSBTAG00000019107GAS7Growth arrest-specific 719:29670743–298766500.960.69*0.870.860.81
ENSBTAG00000019822TPPP3Tubulin polymerization-promoting protein family member 318:35121242–351248201.730.290.20*0.690.71
ENSBTAG00000019876DSC1Desmocollin 124:26283414–263215901.070.780.66*0.630.76
ENSBTAG00000020261CDH26Cadherin 2613:57056796–570911070.210.200.160.200.13*
ENSBTAG00000020384WDR47WD repeat domain 473:34446313–345068000.820.57**0.62**0.750.75
ENSBTAG00000023026SERPINB2Serpin peptidase inhibitor, clade B (ovalbumin), member 224:12747968–127653141.100.44**0.43**0.640.99
ENSBTAG00000023730TBB3Tubulin beta-3 chain18:14761259–147699140.790.49*0.510.690.81
ENSBTAG00000025531PSORS1C2Psoriasis susceptibility 1 candidate 223:27793272–277947120.500.49*0.631.190.97
ENSBTAG00000026585Elongin A2:129738382–1297528890.870.70*0.811.001.01
ENSBTAG00000027225LAPLingual antimicrobial peptide27:5124122–51259870.35***0.36***0.38**0.550.76
ENSBTAG00000030301MAP7D1MAP7 domain containing 13:110233981–1102436210.700.48*0.620.831.00
ENSBTAG00000030484KLK12Kallikrein-related peptidase 1218:57461616–574655670.530.470.29**0.600.24**
ENSBTAG00000031160IGLL1Immunoglobulin lambda-like polypeptide 117:72826679–731528620.61**0.801.101.120.77
ENSBTAG00000031551PRSS53Protease, serine, 5325:27450355–274553690.46*0.40***0.38**0.670.76
ENSBTAG00000033107OSMROncostatin M receptor20:35521409–355881860.710.56**0.690.931.08
ENSBTAG00000033398HKDC1Hexokinase domain containing 128:25752420–257914560.630.31**0.30**0.480.77
ENSBTAG00000033669IL17RCInterleukin 17 receptor C22:16873473–168850250.910.70*0.800.961.16
ENSBTAG00000034189ADH1CAlcohol dehydrogenase 1C (class I), gamma polypeptide6:26656287–266724280.864.57*3.460.945.55***
ENSBTAG00000034498LY6DLymphocyte antigen 6D14:2801382–28030200.560.19*0.370.340.52
ENSBTAG00000035171SERPINB5Serpin peptidase inhibitor, clade B (ovalbumin), member 524:62319471–623293730.890.690.520.30**0.43
ENSBTAG00000038540Uncharacterized protein26:25060218–250735030.970.66*0.720.800.81
ENSBTAG00000038878Aox4Aldehyde oxidase 42:89699123–897718710.680.460.32**0.16***0.44
ENSBTAG00000039035Uncharacterized protein3:8027844–802977613.40***0.981.102.050.85
ENSBTAG00000040356SPIRE2Spire homolog 2 (Drosophila)18:14694451–147231230.780.65**0.800.900.90
ENSBTAG00000040394PRSS27Protease, serine 2725:2126943–21338280.46*0.500.500.620.63
ENSBTAG00000040507ARHGEF18Rho/Rac guanine nucleotide exchange factor (GEF) 187:17513880–175656240.740.58*0.750.940.90
ENSBTAG00000043553GPX3Glutathione peroxidase 3 (plasma)7:64286947–642951160.510.49*0.520.710.67
ENSBTAG00000044673SNORA31Small nucleolar RNA SNORA314:15035753–151832080.992.172.70**0.981.10
ENSBTAG00000046124KRT36Keratin 3619:42325913–423299030.912.961.342.374.41*
ENSBTAG00000046158CFBComplement factor B23:27225269–272312920.610.50*0.621.001.83
ENSBTAG00000046482Uncharacterized protein10:26113953–261144240.35*0.34*0.520.690.70
ENSBTAG00000046917GPR22G protein-coupled receptor 224:48576431–488515960.830.74**0.76***0.920.82***
ENSBTAG00000047345Uncharacterized protein18:52984271–530165200.860.67*0.810.981.05

Notes: Numbers denote fold changes (treated/control at 0 h, N = 4).

*FDR < 5%;
**FDR < 1%;
***FDR < 0.1%.