The genes involved in late-onset AD increase disease risk and are not inherited in a Mendelian fashion. First-degree relatives of patients with late-onset AD have twice the expected lifetime risk of this disease of people who do not have an AD-affected first-degree relative.
143 In addition, AD occurs more frequently in monozygotic than in dizygotic co-twins,
144 suggesting a substantial genetic contribution to this disorder. In the largest twin study of dementia, involving 11,884 participants in the swedish registry who were aged >65 years, 395 twin pairs were identified in which either one or both twins had AD.
144 This study demonstrated a heritability of 58–79% for late-onset AD, depending on the model that was used in the data analysis.
Apolipoprotein E APOE is the only established susceptibility gene for late-onset AD and maps to chromosome 19 in a cluster with the genes encoding translocase of outer mitochondrial membrane 40 (TOMM40), apolipoprotein C1 and apolipo-protein C2. APOE is a lipid-binding protein that is expressed in humans as one of three common isoforms, which are encoded by three different alleles, namely
APOE ε2,
APOE ε3 and
APOE ε4. The presence of a single
APOE ε4 allele is associated with a 2–3-fold increase in the risk of AD, while the presence of two copies of this allele is associated with a fivefold increase in the risk of this disease. Each inherited
APOE ε4 allele lowers the age of AD onset by 6–7 years.
145–147 Furthermore, the presence of this allele is associated with memory impairment, MCI, and progression from MCI to dementia.
148
APOE ε4 has been suggested to account for as much as 20–30% of AD risk.
Despite the studies linking
APOE ε4 with AD, the presence of this allele is neither necessary nor sufficient for disease: among participants in the Framingham study,
149 55% of those who were homozygous for
APOE ε4, 27% of those with one copy of this allele and 9% of those without an
APOE ε4 allele developed AD by 85 years of age. Segregation analyses conducted in families of patients with AD support the presence of at least four to six additional major AD risk genes.
150 Additional genetic risk variants After
APOE, the best-validated gene modulating late-onset AD risk is the sortilin-related receptor 1 (
SORL1) gene, which is located on chromosome 11q23. SorL1 belongs to a group of five type I transmembrane receptors (the others being sortilin, SorCS1, SorCS2 and SorCS3) that are highly expressed in the CNS and are characterized by a luminal, extracellular vacuolar protein sorting 10 domain. From family-based and population-based studies that, together, included over 6,000 individuals from four ethnic groups, Rogaeva
et al. identified two haplotypes in the 3' and 5' regions of
SORL1 that are associated with late-onset AD risk.
151 In addition, these researchers demonstrated that SorL1 promotes the translocation and retention of APP in subcellular compartments that exhibit low secretase activity, thereby reducing the extent of proteolytic breakdown into both amyloidogenic and nonamyloidogenic products.
151 As a consequence, under-expression of
SORL1 leads to overexpression of Aβ and an increased risk of AD. Several subsequent studies replicated these initial genetic association findings, and the results were further validated by a collaborative, unbiased meta-analysis of all published genetic data sets that included a total of 12,464 AD cases and 17,929 controls.
152 In the past year, two studies demonstrated that, in addition, genetic variation in the
SORL1 homolog
SORCS1 influences AD risk, cognitive performance, APP processing and Aβ
1–40 and Aβ
1–42 levels through an effect on γ-secretase processing of APP,
153,154 further emphazising the role of SorL1-related proteins in late-onset AD etiology.
Genome-wide association studies for AD using large numbers of cases and controls
155–158 have revealed modest effect sizes for several genes on AD risk, with odds ratios in the range of 1.1–1.5, although most of these studies have only confirmed the association of
APOE with this disease. One such study showed that variants of
TOMM40—which is proximally located to and in linkage disequilibrium with
APOE—were associated with AD risk, but whether these genetic associations are independent of the
APOE locus remains unclear.
159Together, two genome-wide association studies identified variants in the clusterin gene (
CLU), the phosphatidylinositol-binding clathrin assembly protein gene (
PICALM) and complement receptor type 1 gene (
CR1) as being associated with AD, but functional data confirming the roles in AD of the proteins encoded by these genes are still lacking.
160,161 Clusterin is a lipoprotein that is expressed in mammalian tissues and is incorporated into amyloid plaques. This protein binds to soluble Aβ in CSF, forming complexes that can penetrate the BBB. Clusterin levels are positively correlated with the number of
APOE ε4 alleles, suggesting a compensatory induction of
CLU in the brains of AD patients with the
APOE ε
4 allele, who show low brain levels of APOE.
162CR1 encodes a protein that is likely to contribute to Aβ clearance from the brain,
163 while PICALM protein is involved in clathrin-mediated endocytosis, allowing intracellular trafficking of proteins and lipids such as nutrients, growth factors and neurotransmitters.
164 PICALM protein also has a role in the trafficking of vesicle-associated membrane protein 2, a soluble
N-ethylmaleimide-sensitive factor attachment protein receptor that is involved in the fusion of synaptic vesicles to the presynaptic membrane in neurotransmitter release.
A third large genome-wide association study confirmed the associations of
PICALM and
CLU with AD
165 and reported two additional loci as being associated with AD: rs744373, which is near the bridging integrator 1 gene
(BIN1) on chromosome 2q14.3, and rs597668, which is located on chromosome 19q13.3.
Bin1 is a member of the Bar (Bin–amphiphysin–rvs) adaptor family, which has been implicated in caspase-independent apoptosis and membrane dynamics, including vesicle fusion and trafficking, neuronal membrane organization, and clathrin-mediated synaptic vesicle formation.
166 Of note, the latter process is disrupted by Aβ.
167 Changes in
BIN1 expression have also been shown in aging mice and in transgenic mouse models of AD.
168The locus rs597668 is not in linkage disequilibrium with
APOE, suggesting that the effect of this locus on AD risk is independent. Six genes are found in this region, of which at least two (genes encoding biogenesis of lysosomal organelles complex 1 subunit 3 and microtubule-associated protein–microtubule affinity-regulating kinase 4) are implicated in molecular pathways linked to AD or other brain disorders.
169–171The results of the published genome-wide association studies are informative, but the genetic associations need functional validation. Indeed, such studies alone cannot prove causality or assess the biological significance of an observed genetic association. Furthermore, while genome-wide association studies represent a method of screening the genome, limitations exist in their ability to detect true associations. Also, the results of such studies can be difficult to replicate if the actual effect is smaller than that observed in the initial study. Finally, the detection of associations with multiple rare variants at a single site (which are better detected by linkage studies) or with single rare variants (minor allele frequency <5%) may not be possible. These limitations have led researchers to focus on additional biological characteristics—including endophenotypes (
Box 4) and epigenetic characteristics (
Box 5)—to facilitate the identification of disease-causing mutations.
Box 4 | Endophenotypes and genetic epidemiologyEndophenotypes (measurable intermediate phenotypes that are closer to the action of the gene than affection status) provide clues to the genetic underpinnings of a disease, and diagnoses can be deconstructed to increase the success of genetic analyses. Age at disease onset is a well-established endophenotype for Alzheimer disease (AD), and is a key indicator of genetic heterogeneity. Recognition of various age-at-onset profiles among families was critical in the initial identification of genetically distinct forms of AD. Age information, such as age-at-onset data for individuals affected by AD and censored age data for unaffected individuals, is also an important covariate used to modify the penetrance function, allowing determination of age-dependent penetrance of the disease as a function of disease genotype, while also increasing the power of genetic linkage studies and the accuracy with which disease genes can be localized. In addition to the use of age at onset as a covariate and as a stratifier in genome scans, this endophenotype has a genetic basis, with several contributing loci having been identified. Nevertheless, despite overwhelming evidence that age is an important variable to be considered in genetic risk factor research for AD, most genome scans for this disease have not incorporated age information. Other quantitative phenotypes that have been proven useful are pathological phenotypes, such as neuritic plaque and neurofibrillary tangle densities, structural brain changes on brain imaging such as white matter lesions, and cognitive function.
Box 5 | Epigenetic mechanismsSeveral epigenetic studies are underway using normal brain tissue to identify functional cis-acting regulatory polymorphisms that may be associated with brain disorders such as Alzheimer disease. Allele-specific DNA methylation—an epigenetic marker—is often strongly dependent on nearby single-nucleotide polymorphisms (SNPs) and haplotypes. This observation suggests that mapping allele-specific DNA methylation across the whole genome in human brain DNA could be useful for finding regulatory SNPs that act in this target tissue and are involved in specific brain disorders.